Synthesis of triple-stranded complexes using bis(dipyrromethene) ligands

The reaction of an α-free, β,β'-linked bis(dipyrromethene) ligand with Fe(3+) or Co(3+) led to noninterconvertible triple-stranded helicates and mesocates. In the present context, a stable α-free ligand 2 has been developed and complexation of ligands 1 and 2 with diamagnetic Co(3+), Ga(3+), and In(3+) has been studied. The triple-stranded M(2)1(3) (M = Ga, In) and M(2)2(3) (M = Co, Ga, In) complexes were characterized using matrix-assisted laser desorption ionization time-of-flight spectrometry, (1)H NMR and UV-vis spectroscopy, and X-ray crystallography. Again, the (1)H NMR analysis showed that both the triple-stranded helicates and mesocates were generated in this metal-directed assembly. Consistent with our previous finding on coordinatively inert Co(3+) complexes, variable-temperature NMR spectroscopy indicated that the triple-stranded helicate and mesocate of labile In(3+) did not interconvert in solution, either. However, the diastereoselectivity of the M(2)2(3) complexes was found to improve with an increase in the reaction temperature. Taken together, this study complements the coordination chemistry of poly(dipyrromethene) ligands and provides further insight into the formation of helicates versus mesocates.     

Asymmetric synthesis of mono- and dinuclear bis(dipyrrinato) complexes

The diastereoselective syntheses of Zn(II) bis(dipyrrinato) helicates is reported, involving ligands templated by the incorporation of homochiral binol within the linker joining the two dipyrrinato units. The most diastereoselective formation of dinuclear bis(dipyrrinato) helicates to date is reported. The formation of either mononuclear or dinuclear helicates can be tuned by varying the length of the linker between the dipyrrinato units and by varying the complexation procedure. The neutral dipyrrinato helicates were readily analyzed by HPLC to ascertain diastereoselectivity, and circular dichroism studies revealed the helical nature of the complexes. The molar ellipticities of the helicates produced by diastereoselective complexation are very large in the visible region and typically correspond to binol moieties in the UV region. Extensive X-ray crystallographic investigations further confirmed the helicity of the mononuclear Zn(II) helicates and identified significant interlayer displacement and bending within crystals.     

Interaction of Double-Helical Polynuclear Copper(I) complexes with double-stranded DNA

Double-helical metal complexes, the helicates H₂–H₅ , were found to bind to double-helical DNA by spectroscopic, DNA-melting, and electrophoretic-mobility measurements. The helicates also inhibited the cleavage of DNA by two restriction enzymes, Sspl and EcoRV, a property which agrees with the binding occurring in the major groove of the double helix. Visible-light irradiation of solutions containing a helicate and the pBR322 plasmid led to single-strand cleavage, indicating that these complexes could be of interest as potential probes for nucleic-acid structure.     

Synthesis and photophysical properties of Cd(II) and Cu(II) complexes with decamethylated bis(dipyrrolylmethene)

Copper(II) and cadmium(II) complexes with bis(2,4,7,8,9-pentamethyldipyrrolylmethene-3-yl)-methane were synthesized. Influence of the complex-forming ion nature on the optical properties of [Cd₂L₂] and [Cu₂L₂] helicates was studied.     

Discrimination of metallosupramolecular architectures in solution by using diffusion ordered spectroscopy (DOSY) experiments: double-stranded helicates of different lengths

The translational diffusion coefficients of various helicates have been determined by using NMR diffusion spectroscopy (Diffusion Ordered SpectroscopY, DOSY), in order to investigate the individual behaviour of the helicates according to their length (different nuclearities; 1-5 metals), to the nature of the metal involved (CuI or AgI), as well to their bulkiness due to the presence of substituents on the periphery of the assembly. Furthermore, the spectrum of a mixture of helicates belonging to the same series, but with different lengths and nuclearities, showed the signals of each component, with no observable cross-linking, confirming the self-recognition properties of the helicates.     

Hexakis(isopropylthio)-1,5-hexadien-3-yne and its fluorescent Ag(I) coordination polymers: assembly of helicates with thioether sites

A new thioether-rich ligand with a conjugated dienyne backbone and its fluorescent Ag(I) coordination networks have been synthesized and characterized by single crystal X-ray diffraction studies, which reveal that the supramolecular architectures of the networks contain assembled helicates with thioether sites.     

Tuning the self-assembly of lanthanide triple stranded heterobimetallic helicates by ligand design

The heterobitopic ligands L(AB4) and L(AB5) have been designed and synthesised with the ultimate aim of self-assembling dual-function lanthanide complexes containing either a magnetic and a luminescent probe or two luminescent probes emitting at different wavelengths. They react with lanthanide ions to form complexes of composition [Ln(2)(L(ABX))(3)](6+) of which three (X = 4; Ln = Pr, Nd, Sm) have been isolated and characterised by means of X-ray diffraction. The unit cells contain triple-stranded helicates in which the three ligand strands are wrapped tightly around the two lanthanide ions. In acetonitrile solution the ligands form not only homobimetallic, but also heterobimetallic complexes of composition [Ln(1)Ln(2)(L(ABX))(3)](6+) when reacted with a pair of different lanthanide ions. The yield of heterobimetallic complexes is analyzed in terms of both the difference in ionic radii of the lanthanide ions and of the inherent tendency of the ligands to form high percentages of head-head-head (HHH) helicates in which all three ligand strands are oriented in the same direction with respect to the Ln-Ln vector. The latter is very sensitive to slight modifications of the tridentate coordinating units.     

Stereochemically stable double-helicate dinuclear complexes of bis(dipyrromethene)s: a chiroptical study

Helical zinc(II) complexes of bis(dipyrromethene)s bearing homochiral amide substituents were synthesized. Analysis of the products by chiral HPLC showed two diastereomeric major products and showed that dipyrromethene double-nuclear helicates are stereochemically stable and do not interconvert. Circular dichroism (CD) studies showed that the complexation reactions had proceeded with modest diastereomeric excesses. Analysis of an analogous symmetric zinc(II) bis(dipyrromethene) lacking homochiral substituents that could act as chromophores discounted induced CD by the chiral auxiliaries.     

Thermodynamic parameters governing the self-assembly of head-head-head lanthanide bimetallic helicates

The heterobitopic ligands L ABX (X=1, 2, 3, 4 or 5), differing only by a Cl or NEt(2) substituent, have been designed to complex with a pair of lanthanide ions to form triple-stranded bimetallic helicates of overall composition [Ln2(L ABX)3]6+. The percentage of HHH (head-head-head) isomer, in which each of the three ligand strands coordinates to the same lanthanide ion with the same coordination unit, is deciding the ability of the ligands to selectively form heterobimetallic complexes containing one luminescent and one magnetic or two different luminescent ions. It deviates significantly from the statistical value of 25 % and ranges from 6-20 % for L AB2 complexes to 93-96 % for L AB4 complexes. The equilibrium between HHT (head-head-tail) and HHH isomers has been investigated in detail for homobimetallic helicates (Ln=Y, La, Ce, Pr, Nd, Sm, Eu, Lu) by means of variable temperature NMR and thermodynamic parameters have been determined. The equilibrium is characterized by small values of DeltaH and DeltaS, which vary in opposite direction along the lanthanide series for complexes with the same ligand in a way that keeps the value of DeltaG almost constant. The results are interpreted in terms of differences in interstrand stacking, ion-dipole interactions and metal-metal repulsion.     

Iron(II) Supramolecular Helicates Condense Plasmid DNA and Inhibit Vital DNA‐Related Enzymatic Activities

The dinuclear iron(II) supramolecular helicates [Fe₂L₃]Cl₄ (L=C₂₅H₂₀N₄) bind to DNA through noncovalent (i.e., hydrogen‐bonding, electrostatic) interactions and exhibit antimicrobial and anticancer effects. In this study, we show that the helicates condense plasmid DNA with a much higher potency than conventional DNA‐condensing agents. Notably, molecules of DNA in the presence of the M enantiomer of [Fe₂L₃]Cl₄ do not form intermolecular aggregates typically formed by other condensing agents, such as spermidine or spermine. The helicates inhibit the activity of several DNA‐processing enzymes, such as RNA polymerase, DNA topoisomerase I, deoxyribonuclease I, and site‐specific restriction endonucleases. However, the results also indicate that the DNA condensation induced by the helicates does not play a crucial role in these inhibition reactions. The mechanisms for the inhibitory effects of [Fe₂L₃]Cl₄ helicates on DNA‐related enzymatic activities have been proposed.     

Self‐Assembled Triple‐Stranded Lanthanide Dimetallic Helicates with a Ditopic Ligand Derived from Bis(benzimidazole)pyridine and Featuring an (4‐Isothiocyanatophenyl)ethynyl Substituent

Bis(2‐{6‐(diethylcarbamoyl)‐4‐[(4‐isothiocyanatophenyl)ethynyl]pyridin‐2′‐yl}‐1‐ethylbenzimidazol‐5‐yl)methane ( L ^G ) reacts with trivalent lanthanide ions in acetonitrile to yield triple‐stranded dimetallic helicates [Ln₂( L ^G )₃]⁶⁺. ¹H‐NMR Data point to the helicates being the only species formed under stoichiometric conditions and having a time‐averaged D₃ symmetry on the NMR time scale. The photophysical properties of L ^G and its helicates are discussed with respect to the closely related ligands L ^B , L ^E , and their complexes, two ligands devoid of the isothiocyanatophenylethynyl substituent. The quantum yield of the ligand fluorescence is three times smaller compared to L ^E , while that of the Eu^III‐centered luminescence (1.1%) is three times larger. On the other hand, the luminescence of Tb^III is not sensitized by L ^G . This is explained in terms of energy differences between the singlet and triplet states on one hand, and between the 0‐phonon transition of the triplet state and the excited metal ion states on the other. This work demonstrates that bulky substituents in the 4‐position of the pyridine ring do not prevent the formation of triple‐stranded helicates, opening the way for luminescent probes that can easily be coupled to biological materials.     

Extending lifetimes of lanthanide-based near-infrared emitters (Nd, Yb) in the millisecond range through Cr(III) sensitization in discrete bimetallic edifices

A [Cr(alpha,alpha'-diimine)3]3+ chromophore is used as a donor for sensitizing NdIII and YbIII near-infrared (NIR) emitters in the heterobimetallic helicates [LnCrIIIL3]6+. The intramolecular CrIII --> LnIII energy transfer process controls the population of the lanthanide-centered emitting levels, thus leading to unprecedented extension of the NIR luminescence decay times in the millisecond range for Nd and Yb ions incorporated in coordination complexes.     

Solvent Dependence of the Monomer–Dimer Equilibrium of Ketone-Substituted Triscatecholate Titanium(IV) Complexes

Hierarchical helicates based on ketone-substituted titanium(IV)triscatecholates show different monomer-dimer behavior depending on different solvents. The dimerization constants of a whole series of differently alkyl-substituted complexes is analyzed to show that the solvent has a very strong influence on the dimerization. Hereby, effects like solvophobicity/philicity, sterics, electronics of the substituents and weak side-chain—side-chain interactions seem to act in concert.     

Kinetics of the dissociation of zinc(II) complexes with 3,3′-bis(dipyrrolylmethenes) in acetic acid-benzene binary solvent

A comparative study of the dissociation of zinc(II) helicates with a series of 3,3??-bis(dipyrrolylmethenes) (H₂L) of [Zn₂L₂] composition in acetic acid-benzene binary proton donor solvent in the temperature range from 298.15 to 318.15 K is performed by means of electronic spectroscopy. Quantitative kinetic characteristics are determined and a stoichiometric mechanism of reaction is suggested. It is established that the protolytic dissociation of [Zn₂L₂] helicates proceeds according to a third-order kinetic equation of reaction. The effect of alkyl substituents in the pyrrol rings and nature of central 3,3??-spacer on lability of helicates is analyzed.     

Asymmetric transformation of a double-stranded, dicopper(I) helicate containing achiral bis(bidentate) Schiff bases

Reactions of the bis(bidentate) Schiff-bases N,N'-bis(6-alkyl-2-pyridylmethylene)ethane-1,2-diamine (where alkyl = H, Me, iPr) (L) with tetrakis(acetonitrile)copper(I) hexafluorophosphate and silver(I) hexafluorophosphate afforded, respectively, the double-stranded, dinuclear metal helicates [T-4-(R,R)]-(+/-)-[M2L2](PF6)2 (M = Cu, Ag). The helicates were characterized by 1H and 13C NMR spectroscopy, conductivity, microanalysis, and single-crystal X-ray structure determinations on selected compounds. Intermolecular ligand exchange and intramolecular inversion rates for the complexes were investigated by 1H NMR spectroscopy. Reversible intermolecular ligand exchange between two differently substituted helicates followed first-order kinetics. The rate constants (k) and corresponding half-lives (t(1/2)) for ligand exchange for the dicopper(I) helicates were k = (1.6-1.8) x 10(-6) s(-1) (t(1/2) = 110-120 h) in acetone-d6, k = 4.9 x 10(-6) s(-1) (t(1/2) = 40 h) in dichloromethane-d2, and k > 2 x 10(-3) s(-1) (t(1/2) < 5 min) in acetonitrile-d3. Ligand exchange for the disilver(I) helicates occurred with k > 2 x 10(-3) s(-1) (t(1/2) < 5 min). Racemization of the dicopper(I) helicate by an intramolecular mechanism was investigated by determination of the coalescence temperature for the diastereotopic isopropyl-Me groups in the appropriate complex, and DeltaG() > 76 kJ mol(-1) was calculated for the process in acetone-d6, nitromethane-d3, and dichloromethane-d2 with DeltaG() = 75 kJ mol(-1) in acetonitrile-d3. Complete anion exchange of the hexafluorophosphate salt of a dicopper(I) helicate with the enantiomerically pure Delta-(-)-tris(catecholato)arsenate(V) ([As(cat)3]-) in the presence of Dabco gave the two diastereomers (R,R)-[Cu2L2][Delta-(-)-[As(cat)3]]2 and (S,S)-[Cu2L2][Delta-(-)-[As(cat)3]]2 in up to 54% diastereomeric excess, as determined by (1)H NMR spectroscopy. The diastereomerically and enantiomerically pure salt (R,R)-[Cu(2)L2][Delta-(-)-[As(cat)3]]2 crystallized from the solution in a typical second-order asymmetric transformation. The asymmetric transformation of the dicopper(I) helicate is the first synthesis of a diastereomerically and enantiomerically pure dicopper(I) helicate containing achiral ligands.     

Hairpin helicates: a missing link between double-helicates and trefoil knots

We have prepared a novel ligand in which two qpy metal-binding domains are linked by a polyoxyethylene spacer. The new ligand reacts with copper(ii) salts to form dinuclear double helicates with a hairpin structure. The hairpin complex and a model complex have been structurally characterised. The hairpin structure is formed regioselectively as the head-to-tail (HT) stereoisomer. Detailed electrochemical and spectroelectrochemical studies of the complexes are reported.     

Supramolecular coordination chemistry in aqueous solution: lanthanide ion-induced triple helix formation

The self-assembly of dinuclear triple helical lanthanide ion complexes (helicates), in aqueous solution, is investigated utilizing laser-induced, lanthanide luminescence spectroscopy. A series of dinuclear lanthanide (III) helicates (Ln(III)) based on 2,6-pyridinedicarboxylic acid (dipicolinic acid, dpa) coordinating units was synthesized by linking two dpa moieties using the organic diamines (1R,2R)-diaminocyclohexane (chxn-R,R) and 4,4'-diaminodiphenylmethane (dpm). Luminescence excitation spectroscopy of the Eu3+ 7F0-->5D0 transition shows the apparent cooperative formation of neutral triple helical complexes in aqueous solution, with a [Eu2L3] stoichiometry. Eu3+ excitation peak wavelengths and excited-state lifetimes correspond to those of the [Eu(dpa)3]3- model complex. CD studies of the Nd(III) helicate Nd2(dpa-chxn-R,R)3 reveal optical activity of the f-f transitions, indicating that the chiral linking group induces a stable chirality at the metal ion center. Molecular mechanics calculations using CHARMm suggest that the delta delta configuration at the Nd3+ ion centers is induced by the chxn-R,R linker. Stability constants were determined for both ligands with Eu3+, yielding identical results: log K = 31.6 +/- 0.2 (K in units of M-4). Metal-metal distances calculated from Eu3+-->Nd3+ energy-transfer experiments show that the complexes have metal-metal distances close to those calculated by molecular modeling. The fine structure in the Tb3+ emission bands is consistent with the approximate D3 symmetry as anticipated for helicates.     

meso-spacer influence on properties of zinc(II) complexes with 2,3′- and 3,3′-bis(dipyrrolylmethenes)

The study and comparative analysis of spectral-luminescent characteristics (absorption and fluorescence spectra), of quantum yield, and fluorescence life time in solutions, of lability in proton-donor media, solid phase thermal stability in air oxygen and argon was carried out for binuclear zinc(II) helicates with decamethyl-substituted 2,3′- and 3,3′-bis(dipyrrolylmethenes). The influence of molecular structure features of the ligands on the physicochemical properties of helicates was discussed.     

The versatile, efficient, and stereoselective self-assembly of transition-metal helicates by using hydrogen-bonds

A diverse range of dinuclear double-stranded helicates in which the ligand strand is built up by using hydrogen-bonding has been synthesized. The helicates, formulated as [Co(2)(L)(2)(L-H)(2)X(2)], readily self-assemble from a mixture of a suitable pyridine-alcohol compound (L; for example, 6-methylpyridine-2-methanol, 1), and a CoX(2) salt in the presence of base. Nine such helicates have been characterized by X-ray crystallography. For helicates derived from the same pyridine-alcohol precursor, a remarkable regularity was found for both the molecular structure and the crystal packing arrangements, regardless of the nature of the ancillary ligand (X). A notable exception was observed in the solid-state structure of [Co(2)(1)(2)(1-H)(2)(NCS)(2)] for which intermolecular nonbonded contacts between the sulfur atoms (SS=3.21 A) lead to the formation of 1D chains. Helicates derived from (R)-6-methylpyridine-2-methanol (2) are soluble in solvents such as CH(3)CN and CH(2)Cl(2), and their self-assembly could be monitored in solution by (1)H NMR, UV/Vis, and CD titrations. No intermediate complexes were observed to form in a significant concentration at any point throughout these titrations. The global thermodynamic stability constant of [Co(2)(2)(2)(2-H)(2)(NO(3))(2)] was calculated from spectrophotometric data to be logbeta=8.9(8). The stereoisomerism of these helicates was studied in some detail and the self-assembly process was found to be highly stereoselective. The chirality of the ligand precursors can control the absolute configuration of the metal centers and thus the overall helicity of the dinuclear assemblies. Furthermore, the enantiomers of rac-6-methylpyridine-2-methanol (3) undergo a self-recognition process to form exclusively homochiral helicates in which the four pyridine-alcohol units possess the same chirality.     

Cholesterol-armed cyclens for helical metal complexes offering chiral self-aggregation and sensing of amino acid anions in aqueous solutions

Cholesterol-armed cyclens worked as octadentate receptors for Na+, Ca2+, and Y3+ complexes in which four chiral cholesterol-functionalized sidearms were bundled and asymmetrically twisted above cyclen-metal complex platforms. Since the resulting helical metal complexes included chiral, hydrophobic cholesterol residues and charged, hydrophilic metal sites as well as asymmetric coordination geometries, they exhibited unique amphiphilic properties and provided chiral self-aggregates in aqueous solutions. Light scattering, fluorescence, and TEM characterizations demonstrated that Na+ complex with cholesterol-armed cyclen gave a particularly stable self-aggregate in aqueous solution and offered supramolecular environments effective for sensing and detection of amino acid anions. Various dansylamino acid derivatives (dansyl = 5-(dimethylamino)-1-naphthalenesulfonyl) were nicely accommodated in the helicate aggregates to give highly enhanced fluorescence signals, which could be detected by the naked eye at 10(-7) mol/L level. Their inclusion behaviors were analyzed by a Langmuir-type equation, indicating that enantiomer-selective inclusion occurred. MM/MD calculations and circular dichroism (CD) studies further suggested that cholesterol-armed cyclen helicates have chiral and hydrophobic cavities upon self-aggregation, in which the dansylamino acid anions were specifically accommodated. Since these helicates exhibited nonselective binding abilities in solvent extraction experiments of dansylamino acid anions, uncommon chiral recognition and sensing functions were generated by supramolecular alignments of the chiral metal helicates in the aqueous solutions.