Determination of thermodynamic pKa values of benzimidazole and benzimidazole derivatives by capillary electrophoresis

Thermodynamic pK_a values for benzimidazole and several substituted benzimidazoles were determined by CE. Electrophoretic mobilities of benzimidazoles were determined by CE at different pH levels and ionic strengths. The dependence of electrophoretic mobilities on pH was used to obtain pK_a values at different ionic strengths. Extrapolations to zero ionic strength were used to determine the thermodynamic pK_a values. Using this method the thermodynamic pK_a values of 15 benzimidazoles were determined and found to range from 4.48 to 7.38. Results from the CE measurements were compared with spectrophotometric measurements which were evaluated at wavelengths where the highest absorbance difference for varying pH was recorded. The two analytical techniques were in good agreement.     

Determination of pK a of benzoic acid- and p-aminobenzoic acid-modified platinum surfaces by electrochemical and contact angle measurements

Acidity constant values of benzoic acid (BA)-modified platinum electrode (Pt-BA) and p-aminobenzoic acid (pABA)-modified platinum electrode (Pt-NHBA) surfaces were determined using cyclic voltammetry (CV), electrochemical impedance spectroscopy (EIS), and contact angle measurements (CAM). Diazonium tetrafluoroborate salt reduction and pABA oxidation reactions were used to prepare (Pt-BA) and (Pt-NHBA) surfaces, respectively. Both surfaces exhibited pH dependence with [Fe(CN)₆]^3?/4? redox probe solutions at different pH; this allowed us to estimate the surface pK _a values. Acidity constants for Pt-BA surface were found to be pK _a (3.09 ± 0.25), (4.89 ± 0.11), and (3.91 ± 0.54) by CV, EIS, and CAM techniques, respectively, while the values for Pt-NHBA surface were pK _a (3.16 ± 0.45), (4.24 ± 0.40), and (5.64 ± 0.12). The Pt-BA surface pK _a values were lower in CV and CAM measurements relative to the bulk solution of BA, while a higher value was observed in EIS for Pt-BA surface. The pK _a values determined for Pt-NHBA surface via both CV and EIS were lower than the bulk value; however, the result obtained from CAM was one unit higher than pK _a of bulk pABA.     

Contrasting pKa of protonated bis(3-aminopropyl)-terminated polyethylene glycol "Jeffamine" and the associated thermodynamic parameters in solution and covalently attached to graphite surfaces

The pKa value of protonated Jeffamine (bis(3-aminopropyl) terminated polyethylene glycol) in solution and attached as a monolayer to graphite surfaces has been determined using potentiometric titration. The protonated Jeffamine was found to have a pKa value of 9.7 in solution at 25 degrees C, whereas this value decreases to 7.1 when it is attached to a graphite surface. Potentiometric titrations from 25 to 40 degrees C allowed us to determine the surface pKa of the protonated Jeffamine at each temperature studied and hence to determine the enthalpy, entropy and Gibbs energy changes associated with the deprotonation of the amino-terminated surface bound Jeffamine groups. It was found that the enthalpic contribution is negligibly small and the evaluation of these thermodynamic parameters controlling the shift in surface pKa value indicates that this process is controlled by entropic contribution arising from the ordering/disordering of solvent molecules at the carbon-water interface. This suggests that the long chain Jeffamine molecules are oriented on the carbon surface rather than existing in the bulk solution.     

A simple relationship between the hammett acidity function,Ho, and the thermodynamic pKa values of unsubstituted aromatic carboxamides

The well-known failure of the Hammett H_o function to describe the prototropic reaction isotherms of aromatic carboxamides can be corrected by taking account of the hydration requirements of the prototropic reactions of the carboxamides relative to the hydration requirements of the dissociations of the primary amines used as indicators to establish the H_o scale. This approach has been successfully applied to benzamide and the naphthamides. For up to a 4:1 molar ratio of water to sulfuric acid, the amide acidity scale, H_A and the H_o scale are simply related by H_A = H_o — 2 log a_w , where a_w is the activity of water.     

Adsorption behavior of dinucleotides on bare and ru-modified glassy carbon electrode surfaces

The interactive behavior of flavin adenine dinucleotide (FAD) with a bare glassy carbon electrode (GCE) and a Ru-modified GCE was investigated. The reduction of FAD at a GCE/ruthenium-modified GCE surface is a quasi-reversible, surface-controlled process, and our data implied that the attachment of FAD onto the surface is caused by nonspecific adsorption instead of covalent linkage, in which the adenine ring of FAD adopts a flat orientation on the GCE surface in neutral and dilute solutions in order to maximize the pi-pi stacking with the carbon surface and reorients to a perpendicular orientation as the surface gets more crowded. FAD desorption during the exchange with nicotinamide adenine dinucleotide (NAD+) is one order of magnitude slower than desorption in the absence of NAD+, which indicates a strong interaction between FAD and NAD+. General knowledge of the interactive behavior of NAD+ on a FAD-adsorbed GCE provides useful information for the design of a modified electrode surface for the generation of NADH from NAD+.     

A study of carbon surfaces in molten LiCl-KCl eutectic-currentless deposition of precious metals on glassy carbon substrates

Currentless deposition of precious metals, Au, Pt, Ir, Ru, Rh and Pd, on glassy carbon surfaces in LiCl-KCl eutectic at 450°C has been reported. When the electrodes are simply immersed in the melt solutions containing the metal ions, metal deposits equivalent to several atomic layers are obtained within a few minutes. Chronopotentiometric stripping of deposited metals and the decays of open-circuit potentials during the soaking experiments strongly suggest that the deposition is related to the surface redox properties of carbon substrates. Interpretation of the deposition process based on the mixed potential concept is presented, and the substrate reactivity derived from the deposited amount is ascribed to the surface redox reactions involving bulk O^2? ions, superficial water and surface functional groups.     

Carbon nanotube detectors for microchip CE: comparative study of single-wall and multiwall carbon nanotube, and graphite powder films on glassy carbon, gold, and platinum electrode surfaces

The performance of microchip electrophoresis/electrochemistry system with carbon nanotube (CNT) film electrodes was studied. Electrocatalytic activities of different carbon materials (single-wall CNT (SWCNT), multiwall CNT (MWCNT), carbon powder) cast on different electrode substrates (glassy carbon (GC), gold, and platinum) were compared in a microfluidic setup and their performance as microchip electrochemical detectors was assessed. An MWCNT film on a GC electrode shows electrocatalytic effect toward oxidation of dopamine (E(1/2) shift of 0.09 V) and catechol (E(1/2) shift of 0.19 V) when compared to a bare GC electrode, while other CNT/carbon powder films on the GC electrode display negligible effects. Modification of a gold electrode by graphite powder results in a strong electrocatalytic effect toward oxidation of dopamine and catechol (E(1/2) shift of 0.14 and 0.11 V, respectively). A significant shift of the half-wave potentials to lower values also provide the MWCNT film (E(1/2) shift of 0.08 and 0.08 V for dopamine and catechol, respectively) and the SWCNT film (E(1/2) shift of 0.10 V for catechol) when compared to a bare gold electrode. A microfluidic device with a CNT film-modified detection electrode displays greatly improved separation resolution (R(s)) by a factor of two compared to a bare electrode, reflecting the electrocatalytic activity of CNT.     

Cyclic voltammetry of FAD adsorbed on graphite,glassy carbon,platinum and gold electrodes

The electrochemical properties of FAD adsorbed on graphite were studied with cyclic voltammetry. A film with a surface coverage of up to 2×10^?8 mol cm^?2 was formed after 4 h. The film-covered electrodes were stable for long times and they were investigated in buffers without any FAD. A single well-behaved wave was observed, k⁰≌1 s^?1. The pH dependence of E_1/2 was studied. On glassy carbon, platinum and gold much less FAD was adsorbed and it was removed with one rinse.     

Determination of hydrogen peroxide using glassy carbon and graphite/polyester composite electrodes modified by vanadium-doped zirconias

Synthetic monoclinic and tetragonal vanadium-doped zirconias (VZrO₂) with vanadium loading ranging from 0.5 to 15 mol% are used to modify glassy carbon and graphite/polyester composite electrodes able to detect oxygen and hydrogen peroxide in neutral aqueous media. Electrodes modified by monoclinic VZrO₂ decrease the overpotential for the reduction of oxygen and hydrogen peroxide in neutral and alkaline media and enhance their reduction currents with respect to unmodified carbon electrodes. This is associated to seven-coordinated vanadium centers isomorphously substituting zirconium ones in the ZrO₂ lattice. The catalytic effect shows site-selectivity, since it is almost entirely absent in tetragonal VZrO₂ in which eight-coordinated vanadium sites exists. Under optimized conditions using differential pulse detection mode, the height of the cathodic catalytic current peak is directly proportional to the hydrogen peroxide concentration over the concentration range 5-400 μM with a sensitivity of 170 μA/mM at pH 10.0. The detection limit (3σ) is calculated as 0.9 μM.     

Theoretical calculation of the pKa values of some drugs in aqueous solution

In this work, calculations of pK_a values have been performed on benzoic acid and its para‐substituted derivatives and some drugs by using Gaussian 98 software package. Gas‐phase energies were calculated with HF/6‐31 G** and B3LYP/6‐31 G** levels of theory. Free energies of solvation have been computed using the polarizable continuum model (PCM), conductor‐like PCM (CPCM), and the integral equation formalism‐PCM at the same levels which have been used for geometry determination in the gas‐phase. The results that show the calculated pK_a values using the B3LYP are better than those using the corresponding HF. In comparison to the other models, the results obtained indicate that the PCM model is a suitable solvation model for calculating pK_a values. For the investigated compounds, a good agreement between the experimental and the calculated pK_a values was also observed. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Immobilization of aryl and alkynyl groups onto glassy carbon surfaces by electrochemical reduction of iodonium salts

A new versatile method has been developed for the electrochemically assisted grafting of carbon materials. The approach is based on the reduction of iodonium salts and allows the immobilization not only of aryl groups, such as phenyl or nitrophenyl, but also of alkynyl groups under mild conditions. In particular, the immobilization of alkynyl groups is important because such grafting cannot be accomplished using any other known reductive procedure. The electrochemical properties of the grafted surfaces with estimated coverages of (4-6) x 10(-)(10) mol cm(-)(2) are investigated against the ferrocene and Fe(CN)(6)(3)(-) solution probes. The analysis of the surfaces is carried out by means of cyclic voltammetry and X-ray photoelectron spectroscopy.     

The relationship between electron densities and the pKa values in a series of methylpyrazines

Based on the literature values, the pK₁ and pK₂ for pyrazine and its six methyl derivatives, the correlation with electron density on the nitrogen atoms N₁ and N₄ was found. The effect of methyl group was proved to be additive. The total electron density, π-electron density, and dipole moments for compounds under study were determined by the CNDO /2-MO method.     

Linear-scaling molecular orbital calculations for the pKa values of ionizable residues in proteins

In this report, we present a computational methodology for the pKa prediction of proteins, based on linear-scaling molecular orbital calculations for their solution-conformations obtained from NMR measurements. The method is used to predict the pKa values of five carboxylic acids (Asp7, Glu10, Glu19, Asp27, and Glu43) in turkey ovomucoid third domain (OMTKY3), and six aspartates residues (Asp 22, Asp 44, Asp 54, Asp 75, Asp 83, and Asp 93) in barnase. For OMTKY3, all the predicted pKa values are within 1 pH units from the available experimental ones, except for the case of Glu 43. For barnase, the root-mean-square deviation from experiment is 1.46 pH units. As a result, the proposed pKa calculation method correctly reproduces the relative order of the pKa values among the carboxylic acids located in different sites of the proteins. The calculated pKa values are decomposed into the contributions of short- and long-range structural difference effects. The results indicate that in both proteins the pKa value of the given carboxylic acid is partially influenced by long-range interactions with distant charged residues, which significantly contribute to determining the relative order of the pKa values. The current methodology based on LSMO provides us useful information about the titration behavior in a protein.     

Determination of the overlapping pKa values of resorcinol using UV-visible spectroscopy and DFT methods

In this paper we determine the overlapping pK(a) values of resorcinol in water, applying a UV-Vis spectroscopic method that uses absorbance diagrams. On the other hand, in order to explain the pK(a) values obtained, we also investigate the molecular conformations and solute-solvent interactions of the resorcinate anions, using ab initio and density functional theory methods. Several ionization reactions and equilibria in protic solvents, which possess a high hydrogen-bond-donor capability, are proposed. The mentioned reactions and equilibria constituted the indispensable theoretical basis to calculate the acidity constants of resorcinol. Basis sets at the HF/6-31 + G(d) and B3LYP/6-31 + G(d) levels of theory were used for calculations. Tomasi's method was used to analyze the formation of intermolecular hydrogen bonds between the resorcinate anions and water molecules. In this way, it was determined that in alkaline aqueous solutions the monoanion and dianion of resorcinol are solvated with two and four molecules of water, respectively. The agreement between the experimentally determined pK(a) values and those reported in the literature demonstrates the applicability and accurateness of the spectroscopic method here used. On the other hand, the agreement between the experimental and theoretically calculated pK(a) values provides solid support for the acid-base reactions proposed in this work.     

Attempts to acclerate the rates of oxidation of ruthenium and osmium tetramethylcyclam complexes at graphite and glassy carbon electrodes and within nafion coatings

The oxidation of 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane complexes of ruthenium(III) and (IV) and osmium(III) proceeds much more slowly than the reduction of the corresponding oxidation products at platinum, gold and untreated glassy carbon electrodes. The oxidations at oxidized glassy carbon and pyrolytic graphite electrode surfaces are more rapid. The suggestion (Cabaniss et al., J. Am. Chem. Soc., 107 (1985) 1845) that quinone-like functional groups on the oxidized electrode surfaces are responsible for the higher reaction rates was tested by adsorbing various quinones on the surfaces of unactivated glassy carbon electrodes. Rate enhancements resulted in some, but not all, cases. When they were incorporated in Nafion coatings, the oxidation of the ruthenium and osmium complexes was slow at all electrode surfaces. The pH dependences of the oxidation rates on both bare electrodes and within Nafion indicated that the rate limiting step was the proton loss that accompanies the electron transfer during the oxidation. One attempt to utilize a powerfully oxidizing, proton-accepting complex as a homogeneous catalyst for the oxidations was unsuccessful. A possible reason is suggested for the apparently superior catalytic activity of oxidized surfaces.     

Crosslinking of epoxy resins at interfaces. IV. Anhydride-cured resins at carbon and graphite surfaces

Dispersions of carbon blacks and chopped carbon fibers in epoxy resins may be characterized by infrared internal reflection spectroscopy (IR–IRS). The high surface areas of the carbons (often ≥ 100 m²/g) ensure a high degree of interfacial contact between the carbon surface and the polymer. The crosslinking kinetics and final crosslinked state of an anhydride-cured epoxy resin are shown to be affected strongly by the carbons through adsorption of the tertiary amine catalyst at oxidation sites on the carbon surface. Oxidative treatments of the carbons (nitric acid oxidation, air oxidation) increase the effect on the crosslinking chemistry. Carbon dioxide treatment of the carbons, which produces a basic surface, reduces the effect on the crosslinking. The effects on the crosslinking kinetics were confirmed by differential scanning calorimetry (DSC). The relevance of these results to the characterization of the interphase in carbon fiber/epoxy composites is discussed.     

Prediction of pKa shifts in proteins using a combination of molecular mechanical and continuum solvent calculations

The prediction of pKa shifts of ionizable groups in proteins is of great relevance for a number of important biological phenomena. We present an implementation of the MM-GBSA approach, which combines molecular mechanical (MM) and generalized Born (GB) continuum solvent energy terms, to the calculation of pKa values of a panel of nine proteins, including 69 individual comparisons with experiment. While applied so far mainly to the calculation of biomolecular binding free energies, we show that this method can also be used for the estimation of protein pKa shifts, with an accuracy around 1 pKa unit, even for strongly shifted residues. Our analysis reveals that the nonelectrostatic terms that are part of the MM-GBSA free energy expression are important contributors to improved prediction accuracy. This suggests that most of the previous approaches that focus only on electrostatic interactions could be improved by adding other nonpolar energy terms to their free energy expression. Interestingly, our method yields best accuracy at protein dielectric constants of epsilonint = 2-4, which is in contrast to previous approaches that peak at higher epsilonint > or = 8. An important component of our procedure is an intermediate minimization step of each protonation state involving different rotamers and tautomers as a way to explicitly model protein relaxation upon (de)protonation.     

Characteristic luminescence of the anilinium ion and the pKa values of excited singlet and triplet states

Contrary to earlier observations a characteristic luminescence due to the C₆H₅NH⁺₃ ion was observed. The ion at 80 K, gives a fluorescence similar to that of benzene and a phosphorescence similar to that of aniline. The benzene type fluorescence changes to the aniline type on warming. It is suggested that an excited C₆H₅NH⁺₃ ion giving rise to the fluorescence becomes dissociated in the excited state. Computations for a change in the pKa values for excited singlet and triplet states of C₆H₅NH⁺₃ ion also suggest that is a larger probability of losing the proton in the excited state.     

Metal coordination and imine-amine hydrogen bonding as the source of strongly shifted adenine pKa values

The X-ray crystal structure of a Pt(II) complex of composition trans-[(NH(3))(2)Pt(1,9-DimeA) (1,9-DimeAH)](ClO(4))(3) (2) with 1,9-DimeA = 1,9-dimethyladenine and 1,9-DimeAH(+) = 1,9-dimethyladeninium) is presented. Complex 2 forms upon deprotonation of one of the exocyclic amino groups of the adeninium ligands in trans-[(NH(3))(2)Pt(1,9-DimeAH)(2)](ClO(4))(4) (1), where the two nucleobases are in a head-tail arrangement. The low pK(a1) of 1 (4.1 +/- 0.2) is a consequence of a combination of the effects of metal coordination to N7 of the purine base and efficient stabilization of the deprotonated species. This feature is supported by the results of the structure determination of 2, which displays a head-head orientation of the two bases and intramolecular H-bonding between the imine group of 1,9-DimeA and the amino group of 1,9-DimeAH. In the fully deprotonated species trans-[(NH(3))(2)Pt(1,9-DimeA)(2)](ClO(4))(2) (3), the two nucleobases are again in a head-tail arrangement. The findings are of relevance with regard to the concept of "shifted pK(a) values" of nucleobases. This concept is applied to rationalize acid-base catalysis reactions involving nucleobases of DNA and RNA which occur in the near-physiological pH range.