A uniform framework of projection and community detection for one-mode network in bipartite networks

Projection is a widely used method in bipartite networks. However, each projection has a specific application scenario and differs in the forms of mapping for bipartite networks. In this paper, inspired by the network-based information exchange dynamics, we propose a uniform framework of projection. Subsequently, an information exchange rate projection based on the nature of community structures of a network(named IERCP) is designed to detect community structures of bipartite networks. Results from the synthetic and real-world networks show that the IERCP algorithm has higher performance compared with the other projection methods. It suggests that the IERCP may extract more information hidden in bipartite networks and minimize information loss.     

A general evolving model for growing bipartite networks

In this Letter, we propose and study an inner evolving bipartite network model. Significantly, we prove that the degree distribution of two different kinds of nodes both obey power-law form with adjustable exponents. Furthermore, the joint degree distribution of any two nodes for bipartite networks model is calculated analytically by the mean-field method. The result displays that such bipartite networks are nearly uncorrelated networks, which is different from one-mode networks. Numerical simulations and empirical results are given to verify the theoretical results.     

The Complex Structure of the Pharmacological Drug–Disease Network

The complexity of drug–disease interactions is a process that has been explained in terms of the need for new drugs and the increasing cost of drug development, among other factors. Over the last years, diverse approaches have been explored to understand drug–disease relationships. Here, we construct a bipartite graph in terms of active ingredients and diseases based on thoroughly classified data from a recognized pharmacological website. We find that the connectivities between drugs (outgoing links) and diseases (incoming links) follow approximately a stretched-exponential function with different fitting parameters; for drugs, it is between exponential and power law functions, while for diseases, the behavior is purely exponential. The network projections, onto either drugs or diseases, reveal that the co-ocurrence of drugs (diseases) in common target diseases (drugs) lead to the appearance of connected components, which varies as the threshold number of common target diseases (drugs) is increased. The corresponding projections built from randomized versions of the original bipartite networks are considered to evaluate the differences. The heterogeneity of association at group level between active ingredients and diseases is evaluated in terms of the Shannon entropy and algorithmic complexity, revealing that higher levels of diversity are present for diseases compared to drugs. Finally, the robustness of the original bipartite network is evaluated in terms of most-connected nodes removal (direct attack) and random removal (random failures).     

Deep Link-Prediction Based on the Local Structure of Bipartite Networks

Link prediction based on bipartite networks can not only mine hidden relationships between different types of nodes, but also reveal the inherent law of network evolution. Existing bipartite network link prediction is mainly based on the global structure that cannot analyze the role of the local structure in link prediction. To tackle this problem, this paper proposes a deep link-prediction (DLP) method by leveraging the local structure of bipartite networks. The method first extracts the local structure between target nodes and observes structural information between nodes from a local perspective. Then, representation learning of the local structure is performed on the basis of the graph neural network to extract latent features between target nodes. Lastly, a deep-link prediction model is trained on the basis of latent features between target nodes to achieve link prediction. Experimental results on five datasets showed that DLP achieved significant improvement over existing state-of-the-art link prediction methods. In addition, this paper analyzes the relationship between local structure and link prediction, confirming the effectiveness of a local structure in link prediction.     

On the degree distribution of projected networks mapped from bipartite networks

Many real-world systems can be represented by bipartite networks. In a bipartite network, the nodes are divided into two disjoint sets, and the edges connect nodes that belong to different sets. Given a bipartite network (i.e. two-mode network) it is possible to construct two projected networks (i.e. one-mode networks) where each one is composed of only one set of nodes. While network analyses have focused on unipartite networks, considerably less attention has been paid to the analytical study of bipartite networks. Here, we analytically derive simple mathematical relationships that predict degree distributions of the projected networks by only knowing the structure of the original bipartite network. These analytical results are confirmed by computational simulations using artificial and real-world bipartite networks from a variety of biological and social systems. These findings offer in our view new insights into the structure of real-world bipartite networks.     

二元随机网

在二分网的基础上明确提出了二元网的概念：同样包含两类节点,二分网同类节点之间没有连接,而二元网同类节点之间可以有连接.构建了一个二元随机网模型,并对二元随机网的结构性质进行研究.二元随机网可以具有小世界效应,并且其平均最短路径长度比单元随机网还要小.另外,两类节点的规模比是一个重要参量,会对网络的结构性质产生重大影响. 关键词： 复杂网络 二分网 二元网 小世界     

Detecting Communities by Revised Max-flow Method in Networks

A ubiquitous phenomenon in networks is the presence of communities within which the network connections are dense and between which they are sparser.This paper proposes a max-flow algorithm in bipartite networks to detect communities in general networks.Firstly,we construct a bipartite network in accordance with a general network and derive a revised max-flow problem in order to uncover the community structure.Then we present a local heuristic algorithm to find the optimal solution of the revised max-flow problem.This method is applied to a variety of real-world and artificial complex networks,and the partition results confirm its effectiveness and accuracy.     

Detecting Communities by Revised Max-flow Method in Networks

A ubiquitous phenomenon in networks is the presence of communities within which the network connections are dense and between which they are sparser. This paper proposes a max-flow algorithm in bipartite networks to detect communities in general networks. Firstly, we construct a bipartite network in accordance with a general network and derive a revised max-flow problem in order to uncover the community structure. Then we present a local heuristic algorithm to find the optimal solution of the revised max-flow problem. This method is applied to a variety of real-world and artificial complex networks, and the partition results confirm its effectiveness and accuracy.     

Understanding how both the partitions of a bipartite network affect its one-mode projection

It is a well-known fact that the degree distribution (DD) of the nodes in a partition of a bipartite network influences the DD of its one-mode projection on that partition. However, there are no studies exploring the effect of the DD of the other partition on the one-mode projection. In this article, we show that the DD of the other partition, in fact, has a very strong influence on the DD of the one-mode projection. We establish this fact by deriving the exact or approximate closed-forms of the DD of the one-mode projection through the application of generating function formalism followed by the method of iterative convolution. The results are cross-validated through appropriate simulations.     

非线性网络的动力学复杂性研究

综述了非线性网络的动力学复杂性研究在网络理论、实证和应用方面所取得的主要进展和重要成果;深刻揭示了复杂网络的若干复杂性特征与基本定量规律;提出和建立了网络科学的统一混合理论体系(三部曲)和网络金字塔,并引入一类广义Farey组织的网络家族,阐明网络的复杂性-简单性与多样性-普适性之间转变关系;揭示了网络的拓扑结构特征与网络的动态特性之间关系;建立具有长程连接的规则网络的部分同步理论并应用于随机耦合的时空非线性系统的同步;提出复杂网络的动力学同步与控制多种方法;提出若干提高同步能力的模型、方法和途径,如同步最优和同步优先模型、同步与网络特征量关系、权重作用、叶子节点影响等;提出复杂混沌网络的多目标控制及具有小世界和无标度拓扑的束流输运网络的束晕-混沌控制方法;提出集群系统的自适应同步模型及蜂拥控制方法;探讨网络上拥塞与路由控制、资源博弈及不同类型网络上传播的若干规律;揭示含权经济科学家合作网及其演化特点;实证研究并揭示了多层次的高科技企业网和若干社会网络的特点;提出一种复杂网络的非平衡统计方法,把宏观网络推进到微观量子网络。     

Motifs in co-authorship networks and their relation to the impact of scientific publications

Co-authorship networks, where the nodes are authors and a link indicates joint publications, are very helpful representations for studying the processes that shape the scientific community. At the same time, they are social networks with a large amount of data available and can thus serve as vehicles for analyzing social phenomena in general. Previous work on co-authorship networks concentrates on statistical properties on the scale of individual authors and individual publications within the network (e.g., citation distribution, degree distribution), on properties of the network as a whole (e.g., modularity, connectedness), or on the topological function of single authors (e.g., distance, betweenness). Here we show that the success of individual authors or publications depends unexpectedly strongly on an intermediate scale in co-authorship networks. For two large-scale data sets, CiteSeerX and DBLP, we analyze the correlation of (three- and four-node) network motifs with citation frequencies. We find that the average citation frequency of a group of authors depends on the motifs these authors form. In particular, a box motif (four authors forming a closed chain) has the highest average citation frequency per link. This result is robust across the two databases, across different ways of mapping the citation frequencies of publications onto the (uni-partite) co-authorship graph, and over time. We also relate this topological observation to the underlying social and socio-scientific processes that have been shaping the networks. We argue that the box motif may be an interesting category in a broad range of social and technical networks.     

Effect of the social influence on topological properties of user-object bipartite networks

Social influence plays an important role in analyzing online users’ collective behaviors[Salganik et al., Science 311, 854 (2006)]. However, the effect of the socialinfluence from the viewpoint of theoretical model is missing. In this paper, by takinginto account the social influence and users’ preferences, we develop a theoretical modelto analyze the topological properties of user-object bipartite networks, including thedegree distribution, average nearest neighbor degree and the bipartite clusteringcoefficient, as well as topological properties of the original user-object networks andtheir unipartite projections. According to the users’ preferences and the global rankingeffect, we analyze the theoretical results for two benchmark data sets, Amazon andBookcrossing, which are approximately consistent with the empirical results. This worksuggests that this model is feasible to analyze topological properties of bipartitenetworks in terms of the social influence and the users’ preferences.     

Community structure in the United Nations General Assembly

We study the community structure of networks representing voting on resolutions in the United Nations General Assembly. We construct networks from the voting records of the separate annual sessions between 1946 and 2008 in three different ways: (1) by considering voting similarities as weighted unipartite networks; (2) by considering voting similarities as weighted, signed unipartite networks; and (3) by examining signed bipartite networks in which countries are connected to resolutions. For each formulation, we detect communities by optimizing network modularity using an appropriate null model. We compare and contrast the results that we obtain for these three different network representations. We thereby illustrate the need to consider multiple resolution parameters and explore the effectiveness of each network representation for identifying voting groups amidst the large amount of agreement typical in General Assembly votes.     

动态复杂网络中节点影响力的研究进展

节点影响力的识别和预测具有重要的理论意义和应用价值,是复杂网络的热点研究领域.目前大多数研究方法都是针对静态网络或动态网络某一时刻的快照进行的,然而在实际应用场景中,社会、生物、信息、技术等复杂网络都是动态演化的.因此在动态复杂网络中评估节点影响力以及预测节点未来影响力,特别是在网络结构变化之前的预测更具意义.本文系统地总结了动态复杂网络中节点影响力算法面临的三类挑战,即在增长网络中,节点影响力算法的计算复杂性和时间偏见;网络实时动态演化时,节点影响力算法的适应性;网络结构微扰或突变时,节点影响力算法的鲁棒性,以及利用网络结构演变阐释经济复杂性涌现的问题.最后总结了这一研究方向几个待解决的问题并指出未来可能的发展方向.     

The Swiss board directors network in 2009

We study the networks formed by the directors of the most important Swiss boards and the boards themselves for the year 2009. The networks are obtained by projection from the original bipartite graph. We highlight a number of important statistical features of those networks such as degree distribution, weight distribution, and several centrality measures as well as their interrelationships. While similar statistics were already known for other board systems, and are comparable here, we have extended the study with a careful investigation of director and board centrality, a k-core analysis, and a simulation of the speed of information propagation and its relationships with the topological aspects of the network such as clustering and link weight and betweenness. The overall picture that emerges is one in which the topological structure of the Swiss board and director networks has evolved in such a way that special actors and links between actors play a fundamental role in the flow of information among distant parts of the network. This is shown in particular by the centrality measures and by the simulation of a simple epidemic process on the directors network.     

Topology of the Erasmus student mobility network

The collaboration network generated by the Erasmus student mobilities in the year 2003 is analyzed and modeled. Nodes of this bipartite network are European universities and links are the Erasmus mobilities between these universities. This network is a complex directed and weighted graph. The non-directed and non-weighted projection of this network does not exhibit a scale-free nature, but proves to be a small-word type random network with a giant component. The connectivity data indicates an exponential degree distribution, a relatively high clustering coefficient and a small radius. It can be easily modeled by using a simple configuration model and arguing the exponential degree distribution. The weighted and directed version of the network can also be described by means of simple random network models.     

A Path-Based Distribution Measure for Network Comparison

As network data increases, it is more common than ever for researchers to analyze a set of networks rather than a single network and measure the difference between networks by developing a number of network comparison methods. Network comparison is able to quantify dissimilarity between networks by comparing the structural topological difference of networks. Here, we propose a kind of measures for network comparison based on the shortest path distribution combined with node centrality, capturing the global topological difference with local features. Based on the characterized path distributions, we define and compare network distance between networks to measure how dissimilar the two networks are, and the network entropy to characterize a typical network system. We find that the network distance is able to discriminate networks generated by different models. Combining more information on end nodes along a path can further amplify the dissimilarity of networks. The network entropy is able to detect tipping points in the evolution of synthetic networks. Extensive numerical simulations reveal the effectivity of the proposed measure in network reduction of multilayer networks, and identification of typical system states in temporal networks as well.     

Clustering coefficient and community structure of bipartite networks

Many real-world networks display natural bipartite structure, where the basic cycle is a square. In this paper, with the similar consideration of standard clustering coefficient in binary networks, a definition of the clustering coefficient for bipartite networks based on the fraction of squares is proposed. In order to detect community structures in bipartite networks, two different edge clustering coefficients LC₄ and LC₃ of bipartite networks are defined, which are based on squares and triples respectively. With the algorithm of cutting the edge with the least clustering coefficient, communities in artificial and real world networks are identified. The results reveal that investigating bipartite networks based on the original structure can show the detailed properties that is helpful to get deep understanding about the networks.     

Public transport networks: empirical analysis and modeling

Public transport networks of fourteen cities of so far unexplored network size are analyzed in standardized graph representations: the simple graph of the network map, the bipartite graph of routes and stations, and both one mode projections of the latter. Special attention is paid to the inter-relations and spatial embedding of transport routes. This systematic approach reveals rich behavior beyond that of the ubiquitous scale-free complex network. We find strong evidence for structures in PTNs that are counter-intuitive and need to be explained, among these a pronounced diversity in the expression of typical network characteristics within the present sample of cities, a surprising geometrical behavior with respect to the two-dimensional geographical embedding and an unexpected attraction between transport routes. A simple model based on these observations reproduces many of the identified PTN properties by growing networks of attractive self-avoiding walks.     

一种基于用户相对权重的在线社交网络信息传播模型

根据在线社交网络信息传播特点和目前社交网络传播模型研究中存在的问题, 本文定义了网络用户之间的相互影响力函数, 在此基础上提出了一种基于用户相对权重的社交网络信息传播模型, 并对网络中的传播路径及传播过程进行了分析, 讨论了不同路径的信息传播影响力.为验证模型的有效性, 将传统的SIR模型和本文模型在六类不同网络拓扑下进行了仿真实验.仿真结果表明, 两类模型在均匀网络中没有明显差异, 但在非均匀网络中本文模型更能体现真实网络特点, 实验同时验证了节点的地位影响着信息的传播, 并且发现英文社交平台Twitter和中文社交平台新浪微博在拓扑结构上具备一定相似性.