A study of internal rotations and vibrational spectra of oxiranemethanol (glycidol)

The conformational stability and the C–O and O–H internal rotations in oxiranemethanol were investigated at the DFT-B3LYP/6-311G**, MP2/6-311G** and MP4(SDQ)/6-311G** levels of theory. Three minima were predicted in the CCOH potential energy scans of the molecule to have relative energies of about 2 kcal/mol or less and all were calculated to have real frequencies upon full optimization of structural parameters at the DFT and the MP2 levels of calculations. The Cg1 (H bond inner) conformation was predicted to be the lowest energy conformation for oxiranemethanol in excellent agreement with an earlier microwave study. The equilibrium mixture was calculated from Gibb's free-energy changes to be about 79% Cg1, 17% G1g and 3% Gg1 at the B3LYP/6-311G** level and about 87% Cg1, 11% G1g and 2% Gg1 at the MP2/6-311G** level for oxiranemethanol at 298.15 K. No conclusive evidence was obtained for the presence of high-energy form in the liquid phase of oxiranemethanol. The vibrational frequencies of oxiranemethanol in its three stable forms were computed at the B3LYP level and complete vibrational assignments were made for the lowest energy Cg1 form on basis of calculated and experimental data of the molecule.     

Conformations and vibrational properties of disulfide bridges: Potential energy distribution in the model system diethyl disulfide

Disulfide bridges are important structural elements in proteins. It is well-known that the position of the characteristic disulfide band at ca. 500 cm⁻¹ in the vibrational spectra varies with the conformation around the disulfide unit. In our computational study on the model system diethyl disulfide, both wavenumber and normal mode composition are analyzed simultaneously as a function of conformation. For the disulfide band, a negative correlation between the calculated vibrational wavenumber and the SS stretching contribution is detected. This trend in the normal mode composition provides an explanation for experimentally observed wavenumber shifts of the disulfide band.     

Vibrational spectra, conformations, ab initio calculations and vibrational assignments of 3-pentyn-2-ol

The infrared spectra of 3-pentyn-2-ol, CH₃CCCH(OH)CH₃, have been recorded as a vapour and liquid at ambient temperature, as a solid at 78 K in the 4000–50 cm⁻¹ range and isolated in an argon matrix at ca. 5 K. Infrared spectra of the solid phase at 78 K were obtained before and after annealing to temperatures of 120 and 130 K. The IR spectra of the solid were quite similar to that of the liquid.

Raman spectra of the liquid were recorded at room temperature and at various temperatures between 295 and 153 K. Spectra of an amorphous and annealed solid were recorded at 78 K. In the variable temperature Raman spectra, some bands changed in relative intensity and were interpreted in terms of conformational equilibria between the three possible conformers. Complete assignments were made for all the bands of the most stable conformer in which OH is oriented anti to C₁(a_Me). From various bands assigned to a second conformer in which OH is oriented anti to H_gem(a_H), the conformational enthalpy differences was found to be between 0.4 and 0.8 kJ mol⁻¹. The highest energy conformer with OH anti to C₃(a_C) was not detected.

Quantum-chemical calculations have been carried out at the MP2 and B3LYP levels with a variety of basis sets. Except for small basis set calculations for which the a_H conformer had slightly lower energy, all the calculations revealed that a_Me was the low energy conformer. The B3LYP/cc-pVTZ calculations suggested the a_Me conformer as more stable by 0.8 and 8.3 kJ mol⁻¹ relative to a_H an a_C, respectively. Vibrational wavenumbers and infrared and Raman band intensities for two of the three conformers are reported from B3LYP/cc-pVTZ calculations.     

Conformational stability of 1-bromo-2-fluoroethane from temperature dependent FT-IR spectra of rare gas solutions

Variable temperature (−55 to −135°C) studies of the infrared spectra (3500–400 cm⁻¹) of 1-bromo-2-fluoroethane, BrCH₂CH₂F, dissolved in liquid krypton and xenon have been recorded. From these data, the enthalpy difference has been determined to be 108±9 cm⁻¹ (1.296±0.113 kJ/mol) and 112±8 cm⁻¹ (1.346±0.098 kJ/mol) from the krypton and xenon solutions, respectively, with the trans conformer the more stable rotamer. Complete vibrational assignments are presented for both conformers which are consistent with the predicted frequencies obtained from the ab initio MP2/6-31G^* calculations. The optimized geometries, conformational stabilities, harmonic force fields, infrared intensities, Raman activities, and depolarization ratios have been obtained from RHF/6-31G^* and/or MP2/6-31G^* ab initio calculations. These quantities are compared to the corresponding experimental quantities when appropriate. Structural parameters and conformational stability have also been obtained from MP2/6-311+G^** calculations. Combining the ab initio predicted structural parameters with the microwave rotational constants, r_o parameters have been obtained for the gauche conformer.     

Excess Molar Enthalpies of the Ternary System {x1CH3CH2COOCH2CH3+x2CH3(CH2)4CH3+(1-x1-x2)CH3CH2CH2OH} at 298.15 K,and Prediction Using Different Theoric Methods

Abstract

Excess molar enthalpies at the temperature 298.15 K and atmospheric pressure of the ternary mixture {x₁CH₃CH₂COOCH₂CH₃+x₂CH₃(CH₂)₄CH₃+(1-x₁-x₂)CH₃CH₂CH₂OH}and of the involved binary mixtures {xCH₃CH₂COOCH₂CH₃+(1-x)CH₃CH₂CH₂OH} and {xCH₃(CH₂)₄CH₃ + (1-x)CH₃CH₂CH₂OH}were measured using a Calvet microcalorimeter. Variable degree polynomials were fitted to the results. The group contribution models of Nitta-Chao and UNIFAC (versions of Tassios, Larsen and Gmehling) were used to estimate ternary excess enthalpy values, and the results were compared to the experimental data. Several empirical expressions for estimating ternary properties from binary results were also applied.     

Conformational stability of 1-pentyne from temperature dependent FT-IR spectra of liquid rare gas solutions and ab initio calculations

Variable temperature studies of the infrared spectra (3500–400 cm⁻¹) of 1-pentyne, CH₃CH₂CH₂CCH, dissolved in liquid xenon (−55 to −100°C) and liquid krypton (−105 to −150°C) have been recorded. These data indicate that the anti (methyl group trans to the acetylenic group) and gauche conformers have relative concentrations that vary with the temperature, i.e. enthalpy nonzero. Utilizing seven sets of conformer pairs for the xenon solution and ten sets of conformer pairs for the krypton solution, the enthalpy difference has been determined to be 50±6 cm⁻¹ (0.60±0.07 kJ/mol) and 45±4 cm⁻¹ (0.54±0.05 kJ/mol), respectively, with the anti conformer the more stable form. Because of two equivalent gauche forms, this conformer is estimated to be in higher abundance at 61±1% in the xenon solution and 62±1% in the krypton solution. Optimized geometries and conformational stabilities have been obtained from ab initio calculations with basis sets 6-31G(d), 6-311+G(d,p), 6-311+G(2d,2p) and 6-311+G(2df,2pd) with full electron correlation by the perturbation method to second order (MP2). All of the calculations predict the gauche rotamer to be the more stable form with a high value of 181 cm⁻¹ from the MP2/6-311+G(d,p) calculations and a low value of 107 cm⁻¹ from the MP2/6-311+G(2d,2p) calculation. The r_o adjusted structural parameters have been obtained from a combination of the microwave rotational constants and ab initio predicted parameters. The values are compared to the recently reported values from an electron diffraction study where the value for the CC bond distance appears to be too long. The results are discussed and the conformational stability is compared to those obtained for some similar molecules.     

FT-Raman and FTIR spectra, normal coordinate analysis and ab initio computations of (2-methylphenoxy)acetic acid dimer

The Fourier Transform Raman and infrared spectra of the crystallized herbicide (2-methylphenoxy)acetic acid (MPA) have been recorded in the region 4000–400 cm⁻¹. The geometry, intermolecular hydrogen bond, and harmonic vibrational frequencies of MPA have been investigated with the help of B3LYP density functional theory (DFT) methods. The calculated molecular geometry has been compared with the experimental data obtained from XRD data. The assignments of the vibrational spectra have been carried out with the aid of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology (SQMFF). The strong doubly hydrogen bonded interface of the dimerized system is well demonstrated by the red shift in OH stretching frequency concomitant with the elongation of bond length. The most stable structure of the dimer possesses center of symmetry and interaction energy of −83.642 kJ mol⁻¹ after the basis set superposition error (BSSE) correction by the counterpoise (CP) method. The natural bond orbital analysis (NBO) ascertains that the delocalization of unpaired electron of oxygen atom onto the CO bond causes double bond character.     

Cis- and trans-3-hexene: infrared spectrum in liquid argon solution, ab initio calculations of equilibrium geometry, normal coordinate analysis, and vibrational assignments

The infrared spectra of cis-3-hexene and trans-3-hexene dissolved in liquid argon have been obtained at temperatures from 93 to 120 K. The absorptions were observed with a low-temperature cell and a Fourier transform infrared spectrophotometer. Ab initio molecular orbital calculations were performed to obtain the equilibrium geometry, vibrational frequencies, force fields, and infrared intensities. The calculations were done at the Hartree-Fock level using 6-31G basis set. The Cartesian force fields from ab initio calculations have been converted to the force field in symmetry coordinates. The scale factors of ab initio calculated force fields were determined. Normal coordinate calculations were performed using a scaled quantum mechanical (SQM) force field. Vibrational normal modes calculated for the lowest energy rotamers of cis- and trans-3-hexene have been assigned to infrared absorption bands observed in liquid argon solution. The assignments were based on calculated frequencies and potential energy distributions. The equilibrium geometries of the two lowest energy rotamers (symmetry C₂ and C_s) of cis-3-hexene and of the three lowest energy rotamers (symmetry C_i, C₂, and C₁) of trans-3-hexene were calculated. Variable temperature studies of the infrared spectrum of cis- and trans-3-hexenes dissolved in liquid argon were done to obtain the ΔH of conversion between the rotamers C₂ and C_s of cis-3-hexene and between the rotamers C_i, C₂, and C₁ of trans-3-hexene.     

Three rotor potential energy scans, conformational equilibrium constants and vibrational analysis of 3-fluoro-1-propanol CH(2)FCH(2)CH(2)OH

The conformational stability and the three rotor internal rotations in 3-fluoro-1-propanol were investigated by the DFT-B3LYP/6-311+G** and the ab initio MP2/6-311+G** levels of theory. The calculated potential energy curves of the molecule at both levels of theory were consistent with complex conformational equilibria of about 12 minima, all of which were predicted to have real frequencies at both the B3LYP and the MP2 levels. The lowest energy minimum in the potential curves of 3-fluoro-1-propanol was predicted to correspond to the Gauche-gauche-trans (Ggt) conformer in excellent agreement with microwave and electron diffraction results. The equilibrium constants for the conformational interconversion of the molecule were calculated and found to correspond to an equilibrium mixture of about 33% Ggt, 14% Ggg1 and 13% Gg1g and about 43% Ggt, 12% Ggg1 and 10% Gg1g distribution by the B3LYP/6-311+G** and the MP2/6-311+G** calculations, respectively, at 298.15K. The vibrational frequencies of each molecule in its three stable forms were computed at B3LYP level and complete vibrational assignments were made based on normal coordinate calculations and comparison with experimental data of the molecule.     

Normal coordinate analysis of MSiH3 moieties in transition metal complexes and comparison to results obtained for silyl halides

In order to examine the influence of the transition metal on the metal-silyl fragment MSiH₃ and the metal-silicon bond, polarized Raman spectra of the complexes (C₅R₅)(CO)₂FeSiH₃ R = H (Cp) (1a), Me (Cp^*) (1b)], (C₅H₅)(CO)(PPh₃)FeSiH₃ (1c), (C₅Me₅)(CO)₂RuSiH₃ (2), (C₅R₅)(CO)₂(PMc₃)MoSiH₃ [R = H (3a), Me (3b)], and (C₅R₅)(CO)₂(PMe₃)WSiH₃ [R = H(4a), Me (4b)] have been recorded. The spectral data have been evaluated and interpreted on the basis of a normal coordinate analysis of the MSiH₃ core and the derived force constants and potential energy distributions were compared to results obtained for analogous halogen derivatives in the series XSiH₃ [X = Br (5), I (6)].     

Infrared and Raman spectra, conformational stability, normal coordinate analysis, ab initio calculations, and vibrational assignment of 1-fluoro-1-methylsilacyclobutane

The infrared (3500–40 cm⁻¹) spectra of gaseous and solid 1-fluoro-1-methylsilacyclobutane, c-C₃H₆SiF(CH₃), have been recorded. Additionally, the Raman spectrum (3500–30 cm⁻¹) of the liquid has been recorded and quantitative depolarization values have been obtained. Both the axial and equatorial (with respect to the methyl group) conformers have been identified in the fluid phases. Variable temperature (−55–−100°C) studies of the infrared spectra of the sample dissolved in liquid xenon have been carried out. From these data, the enthalpy difference has been determined to be 267±10 cm⁻¹ (3.19±0.12 kJ mol⁻¹), with the axial conformer being the more stable form and the only conformer remaining in the polycrystalline solid. A complete vibrational assignment is proposed for the axial conformer and many of the fundamentals for the equatorial conformer have also been identified. The vibrational assignments are supported by normal coordinate calculations utilizing ab initio force constants. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing the 6-31G* and 6-311++G** basis sets at the levels of restricted Hartree–Fock (RHF) and/or Moller–Plesset (MP) to second order. The results are discussed and compared to those obtained for some similar molecules.     

Infrared, and Raman spectra, conformational stability, normal coordinate analysis, ab initio calculations, and vibrational assignment of 1-chlorosilacyclobutane

The infrared spectra (3500–40 cm⁻¹) of gaseous and solid and the Raman spectra (3500–30 cm⁻¹) of liquid and solid 1-chlorosilacyclobutane, c-C₃H₆SiClH, have been obtained. Both the axial and equatorial conformers with respect to the chlorine atom have been identified in the fluid phases. Variable temperature (−105 to −150°C) studies of the infrared spectra of the sample dissolved in liquid krypton have been carried out. From these data, the enthalpy difference has been determined to be 211±17 cm⁻¹ (2.53±0.21 kJ/mol), with the equatorial conformer being the more stable form and the only conformer remaining in the annealed solid. At ambient temperatures, approximately 26% of the axial conformers are present in the vapor phase. A complete vibrational assignment is proposed for the equatorial conformer, and many of the fundamentals of the axial conformers have also been identified. The vibrational assignments are supported by normal coordinate calculations utilizing ab initio force constants. Complete equilibrium geometries, conformational stabilities, harmonic force fields, infrared intensities, Raman activities, and depolarization ratios have been determined for both rotamers by ab initio calculations employing the 6-31G(d) basis set at the levels of restricted Hartree–Fock (RHF) and/or Moller–Plesset (MP) to second order. Structural parameters have also been obtained using MP2/6-311+G(d,p) ab initio calculations. The r₀ parameters for both conformers are obtained from a combination of the ab initio predicted values and the twelve previously reported microwave rotational constants. The results are discussed and compared to those obtained for some similar molecules.     

Infrared and Raman spectra, conformational stability and vibrational assignment of 1-chloro-1-silacyclopentane

Infrared and Raman spectra (3500-60 cm⁻¹) of gas and/or liquid and solid 1-chloro-1-silacyclopentane (c-C₄H₈SiClH) have been recorded and the vibrational data indicate the presence of a single conformer with no symmetry which is consistent with the twisted form. Ab initio calculations with a variety of basis sets up to MP2(full)/aug-cc-pVTZ predict the envelope-axial and envelope-equatorial conformers are saddle points with nearly the same energies but much lower in energy than the planar conformer. Density functional theory calculations by the B3LYP method predicts slightly lower energies for the two envelope forms and considerably lower for the planar form. By utilizing the MP2(full)/6-31G(d) calculations the force constants, frequencies, infrared intensities, band contours, Raman activities, and depolarization values have been obtained to support the vibrational assignment. Estimated r₀ structural parameters have been obtained from adjusted MP2(full)/6-311 + G(d, p) calculations. These experimental and theoretical results are compared to the corresponding quantities of some other five-membered rings.     

Ab initio and RRKM calculations for the reaction channels of O(1D) + CH3CHF2

Ab initio and Rice–Ramsperger–Kassel–Marcus theories are carried out to study the potential energy surface and the energy‐dependent rate constants and branching ratios of the products for O(¹D) + CH₃CHF₂ reaction. Optimized geometries and vibrational frequencies have been obtained by MP2/6‐311G(d,p) method. The main products of the title reaction are CH₃CFO + HF, CH₂CFOH + HF, and CH₃ + CF₂OH at lower collision energy; and CH₃ + CF₂OH, CH₃CF₂ + OH are the main products at higher collision energy. CHF₂ + CH₂OH are the main products in the whole range of collision energy. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Infrared and Raman spectra,DFT investigation of the tautomerism,conformational equilibrium,structure and vibrational assignment of 1-(2-benzothiazolyl)-3-methyl pyrazol-5-one

The low energy conformations of the three tautomers, imine-enol, enamine-keto and imine-keto forms of the title compound have been determined at the B3LYP/6-31 + G(d) level of theory using the relaxed PES scan method and their geometries have been refined at B3LYP/6-311 + G(d,p) and PBE0/6-311 + G(d,p) levels. The results show that the title compound exists in the imine-enol tautomeric form, in contrast to the enamine-keto form which exists in the solid crystalline state, followed by enamine-keto and imine-keto forms with extremely low abundances. The geometry parameters of all tautomeric forms calculated at PBE0/6-311 + G(d,p) and B3LYP/6-311 + G(d,p) levels have been compared with those from the experimental X-ray diffraction. The vibrational (FT-IR and Raman) spectroscopic studies of the most stable tautomer, enamine-keto form have been carried out. The assignment of the fundamental bands observed in the IR and Raman spectra have been facilitated by the SQM force field procedure. The frequencies from SQM procedure have a very good fit to the experimental ones. The total root-mean-square error is only ca. 11 cm⁻¹.     

Conformational and NBO analysis on cis and trans isomers of methyl-1-(4-hydroxy-3-methoxyphenyl)-1,2,3,4-tetrahydro-9H-β-carboline-3-carboxylate

The cis and trans-methyl-1-(4-hydroxy-3-methoxyphenyl)-1,2,3,4-tetrahydro-9H-β-carboline-3-carboxylates were prepared and ¹H and ¹³C NMR spectra were recorded for both isomers. Conformational and NBO analysis were carried out for the cis and trans isomers. Conformer structures were pre-optimized using the hybrid method B3LYP along with the 6-311+G(d) basis set. Frequency calculations were employed to confirm the structures as minimum points. Potential energy surfaces (PES) were built at the same level of theory. Geometries obtained from DFT calculations were used to perform NBO analysis by the NBO 3.1 module in GAUSSIAN 03. The results obtained through theoretical calculations revealed that the shielding observed at C1 for the trans isomer can be attributed to carbomethoxy γ-effect, together with the hyperconjugative effect, while only hyperconjugative effects were found to explain the shielding of C3. The higher chemical shift value of C3 of the cis isomer was attributed to the carbonyl substituent, which plays an important role by capturing part of the electronic density in C3.     

Liquid crystalline polyethers based on conformational isomerism. XIX. Synthesis and characterization of flexible polyethers based on 1-(4-hydroxyphenyl)-2-(2-r-4-hydroxyphenyl) ethane with H,F, CH3, Br,Cl, and CF3 as R groups

The synthesis of 1-(4-hydroxyphenyl)-2-(2-fluoro-4-hydroxyphenyl)ethane ( FBPE ), 1-(4-hydroxyphenyl)-2-(2-chloro-4-hydroxyphenyl)ethane ( CIBPE ), 1-(4-hydroxyphenyl)-2-(2-bromo-4-hydroxyphenyl)ethane ( BrBPE ), and 1-(4-hydroxyphenyl)-2-(2-trifluoromethyl-4-hydroxyphenyl)ethane ( CF₃BPE ), of the corresponding polymers based on 1,5-dibromopentane ( RBPE-5) , 1,8-dibromooctane ( RBPE-8 ), and of the copolymers based on various ratios of 1,5-dibromopentane and 1,8-dibromooctane [ RBPE-5/8(A/B )] is described. The phase transition temperatures and thermodynamic parameters of RBPE-5 and RBPE-8 polymers were compared to those of the corresponding polyethers based on 1,2-bis(4-hydroxyphenyl)ethane ( BPE ) and 1-(4-hydroxyphenyl)-2-(2-methyl-4-hydroxyphenyl)ethane ( MBPE ) which were reported previously. Both isotropic-nematic transition temperatures and corresponding thermodynamic parameters (i.e., enthalpy and entropy changes) decrease in the following order of the substituent R: H > F > CH₃ > Cl > Br > CF₃. This order corresponds to the increase of the breadth of the RBPE molecules, and agrees with the similar trends observed in low molar mass liquid crystals.