Detection of Large Ions in Time-of-Flight Mass Spectrometry: Effects of Ion Mass and Acceleration Voltage on Microchannel Plate Detector Response

In time-of-flight mass spectrometry (TOF-MS), ion detection is typically accomplished by the generation and amplification of secondary electrons produced by ions colliding with a microchannel plate (MCP) detector. Here, the response of an MCP detector as a function of ion mass and acceleration voltage is characterized, for singly charged peptide/protein ions ranging from 1 to 290 kDa in mass, and for acceleration voltages from 5 to 25 kV. A nondestructive inductive charge detector (ICD) employed in parallel with MCP detection provides a reliable reference signal to allow accurate calibration of the MCP response. MCP detection efficiencies were very close to unity for smaller ions at high acceleration voltages (e.g., angiotensin, 1046.5 Da, at 25 kV acceleration voltage), but decreased to ~11% for the largest ions examined (immunoglobulin G (IgG) dimer, 290 kDa) even at the highest acceleration voltage employed (25 kV). The secondary electron yield γ (average number of electrons produced per ion collision) is found to be proportional to mv^3.1 (m: ion mass, v: ion velocity) over the entire mass range examined, and inversely proportional to the square root of m in TOF-MS analysis. The results indicate that although MCP detectors indeed offer superlative performance in the detection of smaller peptide/protein species, their performance does fall off substantially for larger proteins, particularly under conditions of low acceleration voltage.

Design of a high-sensitivity negative ion source time-of-flight mass analyzer assembly created by cylindrical electrodes with a common axis

The new design incorporates the negative ion source and the mass analyzer, both constructed from cylindrical electrodes. The ion source is formed by three gridded cylindrical electrodes: a pulsed grid, the intermediate grid and the final accelerating grid. During a first time lapse, the electrons penetrate through the pulsed grid into the retarding field between this grid and the intermediate grid. The electrons are turning at some depth inside this intergrid space, where the attachment to neutral molecules most probably occurs. Next, the pulsed grid becoming strongly negative and ions are extracted towards the final acceleration grid. The ions from the cylindrical surface where they were created concentrate on the common axis of the electrodes (lateral focusing). The source lateral and time focus are coincident. A cylindrical electrostatic mirror is fitted to the source. The design, with a single stage, ensures also lateral focusing of the ions diverging from the common axis of the electrodes. The mirror electric and geometric parameters were selected to ensure both lateral and time focusing on the final detector with subsequent high luminosity. The basic parameters of the specific negative ion source time-of-flight mass analyzer design proposed here, are ion source final acceleration, intermediate, pulsed cylindrical grid radii 10, 20 and 30 mm, respectively, electrostatic mirror earthed grid and ion turning points surface radii 0.6 and 0.8 m, respectively. Ion packet smearing by the ion energy spread (resulting from the initial electron energy spread as electrons are turning at different depths inside the ionization region, from the moment when ions were created, being accelerated towards the pulsed grid during ionization) and by the turnaround time inside the cylindrical field was accounted for. Maintaining very high sensitivity, a resolution of the order of 100 is expected.     

The even-electron rule in electrospray mass spectra of pesticides

A study of the fragmentation and ion formation of three major families of pesticides (including herbicides, insecticides, and fungicides) by liquid chromatography/time-of-flight mass spectrometry (LC/TOF-MS) and liquid chromatography/quadrupole time-of-flight mass spectrometry (LC/Q-TOF-MS) was carried out using positive electrospray ionization (ESI) and the results compared with those by gas chromatography (GC)/TOF-MS with electron ionization (EI) in order to test the validity of the even-electron rule in electrospray ionization. First, the majority of the fragmentations by positive ion ESI were even electron (EE) ions (93% of the fragment ions). Secondly, the formation of odd-electron (OE) fragment ions was greater with EI, where the fragment ions were present in a ratio of approximately 1:2 (35% OE ions and 65% EE ions). Thirdly, in-source collision-induced dissociation (CID) fragmentation by LC/TOF-MS and CID fragmentation in the collision cell by LC/Q-TOF-MS/MS resulted in 95% of the fragment ions being identical between the two types of fragmentation. As ESI in the positive ion mode yields an EE precursor ion (normally a protonated molecule), this commonly leads to EE fragment ions by elimination of molecules - a process called the even-electron rule. Neutral radical losses were less common in ESI but were common in the EI spectra of the same compounds. The structures that did lead to OE ions in ESI (exceptions to the even-electron rule approximately 7% of all ESI ions) favored electronegative radical losses in approximately the following order: .SO(2)CH(3), .NO(2), .CH(3), .Cl, .SCH(3), .CH(2)CH, and .OH.     

Double ionisation of ICN and BrCN studied by a new photoelectron–photoion coincidence technique

A double time-of-flight technique is described, whereby any number of electrons and ions produced by photoionisation can be detected in coincidence, with energy analysis for the electrons and mass analysis for the ions. Branching ratios, kinetic energy releases and mechanisms in doubly charged ion decays can be measured with selection of the initial double ionisation energy. The new technique, together with spectroscopy by the recently established time-of-flight photoelectron–photoelectron coincidence (TOF-PEPECO) method, is used to study the spectra and dissociation dynamics of ICN⁺⁺ and BrCN⁺⁺.     

Resolution limitations from detector pulse width and jitter in a linear orthogonal-acceleration time-of-flight mass spectrometer

Recent and ongoing advances in timing electronics together with the development of ionization techniques suited to time-of-flight mass spectrometry (TOF-MS) have contributed to renewed interest in this method of mass analysis. Whereas low resolving powers (m/?m < 500) were once an almost unavoidable drawback in TOF-MS, recent developments in instrument geometries have produced much higher resolving powers for many ion sources. The temporal width of detector pulses and jitter in timing electronics, however, lead to contributions to peak widths that are essentially independent of the mass-analyzer ion optics. The effective detector pulse width (?t _d ≈ 1–10 ns typically) can be a limiting factor in the development of high resolution time-of-flight (TOF) instruments with modest drift lengths (～1 m), It also reduces the mass resolution more seriously for light ions. This article presents a method for distinguishing the instrumental “ion arrival-time” resolution (R _o) of a linear TOF mass analyzer from that which is locally measured at a particular mass, limited by the broadening of the detector pulse width and electronics. The method also provides an estimate of ?t _d, that is useful in determining the temporal performance of the detection system. The model developed here is tested with data from a recently constructed orthogonal-acceleration TOF mass spectrometer equipped with a commercially available transient recorder (a LeCroy 400-Msamplejs digital oscilloscope) from which we obtained R _o = 4240 ± 100 [full width at half maximum (FWHM)) and ?t _d = 3.0 ± 0.1 ns (FWHM).     

High energy resolution Auger spectroscopy on a CMA instrument

An experimental method that increases the analyzer resolution of cylindrical mirror analyzer CMA‐based Auger spectrometers is described. By means of electrically biasing the sample, the effective energy resolution obtainable from the CMA instrument is improved from the native 0.5 to 0.1% or even better for higher kinetic energy Auger transitions. In addition, the maximum kinetic energy Auger transition observable by the CMA Auger instrument is increased from 3200 to 5700 eV, in the current realization. It is also shown that the sensitivity of the energy scale calibration to sample working distance with respect to the analyzer is simultaneously reduced, making the method suitable for chemical surface analysis. The biasing is accomplished using a special sample holder with electronics and software that can be added to an existing instrument. The overall capability of the Auger instrument for chemical analysis is, therefore, increased, while preserving all the analytical functionality and features of the CMA. Copyright © 2011 John Wiley & Sons, Ltd.     

Detection of large cluster ions by time-of-flight mass spectrometry with a conversion dynode

A linear time-of-flight mass spectrometer (TOF-MS) has been constructed to measure mass distribution of negatively-charged clusters formed in the hot filament diamond chemical vapor deposition (CVD) process and in the metal evaporation. A conversion dynode made of CsI was employed to enhance detection efficiency of the large clusters greater than 10 000 amu. An atomic peak from the tungsten evaporation was used for the mass calibration of the carbon clusters. The carbon clusters produced in the CVD diamond process was loosely bound so that they were easily fragmented during passage through accelerating electric fields. The mass distribution measured with the TOF-MS system showed much less abundance of large clusters than those measured previously with the energy analyzer and Wien filter.     

Pulsed field ionization-photoelectron photoion coincidence spectroscopy with synchrotron radiation: the heat of formation of the C2H5+ ion

Pulsed field ionization photoelectron (PFI-PE) spectroscopy combined with ion coincidence detection has been used with multi-bunch synchrotron radiation at the Advance Light Source (ALS) to energy select ions and to measure their breakdown diagram. The resolution for ion state selection achieved with Ar+ (2P3/2, 1/2) employing this PFI-PE-photoion coincidence apparatus is 0.6 meV (full width at half maximum). The production of C2H5+ from C2H5Br was investigated near the dissociative photoionization limit with this pulsed field ionization-threshold photoelectron photoion coincidence (PFI-PEPICO) scheme. Although the PFI-PE spectra of C2H5Br, C2H5I, and benzene show that the production of ions in the Franck-Condon gap regions is quite low, the selectivity for PFI-PE detection and the suppression of prompt electrons is such that we can detect 1 PFI-PE out of 25,000 total electrons s-1. The derived C2H5+ heat of formation from the analysis of the C2H5Br+ breakdown diagram and a critical analysis of other results is 900.5 +/- 2.0 kJ mol-1 at 298 K, or 913.2 +/- 2.0 kJ mol-1 at 0 K. This leads to an ethylene proton affinity at 298 K of 682.0 kJ mol-1. The measured IE of C2H5Br is 10.307 eV.     

Why are electron capture negative ion mass spectra not reproducible? An ion source problem

Differences in the electron capture negative ion mass spectra of environmentally related organic compounds acquired on a VG 30-250 triple quadruple mass spectrometer and on an HP 5985B gas chromatography/mass spectrometry system were investigated with respect to the ion formation process. Neither ion source temperature nor pressure was responsible for the differences. The populations of thermal electrons in both ion sources were experimentally determined and found to be similar, suggesting that electron capturing reactions should proceed with comparable efficiencies in both ion sources. The ion extraction efficiencies of the two instruments were examined by monitoring the transmission profiles of low- and high-mass ions as a function of lens potentials. Results indicated that the HP 5985B extraction lens significantly suppressed low-mass ions. Further, theoretical evaluation of ion trajectories using SIMION suggested that on the HP 5985B, low-mass ions entered the mass analyzer as a defocused beam, but high-mass ions entered the analyzer as a well-collimated beam. On the VG 30–250, low- and high-mass ions were transmitted to the analyzer with equal efficiency by the ion extraction system.     

An experimental and theoretical study of double photoionization of CF4 using time-of-flight photoelectron-photoelectron (photoion-photoion) coincidence spectroscopy

Single photon double ionization of CF4 has been studied by means of a time-of-flight photoelectron-photoelectron coincidence technique, which has very recently been extended towards ion detection, with energy analysis for the electrons and mass analysis for the ions. The complete single photon double ionization electron spectrum of CF4 up to a binding energy of approximately 51 eV is presented and discussed, also with the aid of accurate ab initio Green's function calculations. From ion detection in coincidence with the ejected electrons, we derive fragmentation pathway-selected double ionization electron spectra of CF4. From the same data we extract the yield of each doubly charged ion or ion pair as a function of the double ionization energy.     

Structural, spectroscopic, and magnetic study of bis(9,10-dihydro-9-oxo-10-acridineacetate)bis(imidazole)bis(methanol) nickel(II)

The mixed ligand complex [Ni(CMA)2(im)2(MeOH)2] (where CMA = 9,10-dihydro-9-oxo-10-acridineacetate ion, im = imidazole) was prepared, and its crystal and molecular structure were determined. The nickel ions are hexa-coordinated by four oxygen atoms of the carboxylate and hydroxyl groups and by two imidazole nitrogen atoms, to form a distorted octahedral arrangement. The structure consists of a one-dimensional network of the complex molecules connected by strong intermolecular hydrogen bonds. The weak intermolecular C-H...X hydrogen bonds and stacking interactions make up the 2-D structure. Very strong intramolecular hydrogen bonds significantly affect the geometry and vibrational characteristics of the carboxylate group. The UV-vis-NIR electronic spectrum was deconvoluted into Gaussian components. Electronic bands of the Ni(II) ion were assigned to suitable spin-allowed transitions in the D4h symmetry environment. The single ion zero-field splitting (ZFS) parameters for the S = 1 state of Ni(II), as well as the g components, have been determined by high-field and high-frequency EPR (HF-HFEPR) spectroscopy over the frequency range of 52-432 GHz and with the magnetic fields up to 14.5 T: D = 5.77(1) cm-1, E = 1.636(2) cm-1, gx = 2.29(1), gy = 2.18(1), and gz = 2.13(1). These values allowed us to simulate the powder magnetic susceptibility and field-dependent magnetization of the complex.     

How Constant Momentum Acceleration Decouples Energy and Space Focusing in Distance–of–Flight and Time–of–Flight Mass Spectrometries

Resolution in time–of–flight mass spectrometry (TOFMS) is ordinarily limited by the initial energy and space distributions within an instrument’s acceleration region and by the length of the field–free flight zone. With gaseous ion sources, these distributions lead to systematic flight–time errors that cannot be simultaneously corrected with conventional static–field ion–focusing devices (i.e., an ion mirror). It is known that initial energy and space distributions produce non–linearly correlated errors in both ion velocity and exit time from the acceleration region. Here we reinvestigate an old acceleration technique, constant–momentum acceleration (CMA), to decouple the effects of initial energy and space distributions. In CMA, only initial ion energies (and not their positions) affect the velocity ions gain. Therefore, with CMA, the spatial distribution within the acceleration region can be manipulated without creating ion–velocity error. The velocity differences caused by a spread in initial ion energy can be corrected with an ion mirror. We discuss here the use of CMA and independent focusing of energy and space distributions for both distance–of–flight mass spectrometry (DOFMS) and TOFMS. Performance characteristics of our CMA–DOFMS and CMA–TOFMS instrument, fitted with a glow–discharge ionization source, are described. In CMA–DOFMS, resolving powers (FWHM) of greater than 1000 are achieved for atomic ions with a flight length of 285 mm. In CMA–TOFMS, only ions over a narrow range of m/z values can be energy–focused; however, the technique offers improved resolution for these focused ions, with resolving powers of greater than 2000 for a separation distance of 350 mm.      

Structural characterization of 2-aminobenzamide-derivatized oligosaccharides using a matrix-assisted laser desorption/ionization two-stage time-of-flight tandem mass spectrometer

Oligosaccharides were derivatized by reductive amination using 2-aminobenzamide (2-AB) and analyzed by matrix-assisted laser desorption/ionization two-stage time-of-flight (MALDI-TOF/TOF) tandem mass spectrometry (MS/MS) in the positive ion mode. The major signals were obtained under these conditions from the [M+Na]+ ions for all 2-AB-derivatized oligosaccharides. A systematic study was conducted on a series of 2-AB-derivatized oligosaccharides to allow rationalization of the fragmentation processes. The MALDI-TOF/TOF-MS/MS spectra of the [M+Na]+ ions of 2-AB-derivatized oligosaccharides were dominated by glycosidic cleavages. These fragments originating both from the reducing and the non-reducing ends of the oligosaccharide yield information on sequence and branching. Moreover, the MALDI-TOF/TOF-MS/MS spectra were also characterized by abundant cross-ring fragments which are very informative on the linkages of the monosaccharide residues constituting these oligosaccharides. MALDI-TOF/TOF-MS/MS analysis of 2-AB-derivatized oligosaccharides, by providing structural information at the low-picomole level, appears to be a powerful tool for carbohydrate structural analysis.     

Ion detection limitations to mass resolution in matrix-assisted laser desorption time-of-flight mass spectrometry.

The ion detection process in a discrete-dynode electron multiplier can result in significant mass resolution losses in time-of-flight mass spectrometry (TOF-MS) for higher mass-to-charge (m/z) ion species. This resolution loss is attributed to propagation time delays and signal broadening in the ion detector. This is presumed to be due to the generation of a distribution of secondary ion species produced initially upon impact of a primary ion with the first dynode surface of the ion detector. Comparisons are made between the signals produced by a standard discrete dynode ion detector (which amplifies the negatively charged species produced by impact of a primary ion) and a detector modified to respond to only the positively charged secondary ion species produced by a primary ion impact. Ion signals for higher m/z ions with the standard detector geometry are seen to be due to a narrow signal component, most likely due to the generation of secondary electrons and/or very low mass secondary ions (H-), and a broad signal component, apparently due to secondary ions which take significant amounts of time to traverse the low potential fields between the first and second detector dynode. This results in ion signal tailing for higher m/z ion species. Numerical subtraction of the ion signal obtained with the standard and modified detector geometries (singly protonated molecular ion species of equine myoglobin) results in an improvement in mass resolution, such that a new adduct ion species (from trifluoroacetic acid) can be resolved.     

Ideal velocity focusing in a reflectron time-of-flight mass spectrometer

A single-stage ion mirror in a time-of-flight (TOF) mass spectrometer (MS) can perform first order velocity focusing of ions initially located at a start focal plane while second order velocity focusing can be achieved using a double-stage reflectron. The situation is quite different when an ion source extraction field is taken into account. In this case which is common in any practical matrix-assisted laser desorption/ionization (MALDI) TOF-MS a single-stage reflectron, for example, cannot perform velocity focusing at all. In this paper an exact, analytic solution for an electric field inside a one-dimensional reflectron has been found to achieve universal temporal focusing of ions having an initial velocity distribution. The general solution is valid for arbitrary electric field distributions in the upstream (from the ion source to the reflectron) and downstream (from the reflectron to an ion detector) regions and in a decelerating part of the reflectron of a reflectron TOF mass spectrometer. The results obtained are especially useful for designing MALDI reflectron TOF mass spectrometers in which the initial velocity distribution of MALDI ions is the major limiting factor for achieving high mass resolution. Using analytical expressions obtained for an arbitrary case, convenient working formulas are derived for the case of a reflectron TOF-MS with a dual-stage extraction ion source. The special case of a MALDI reflectron TOF-MS with an ion source having a low acceleration voltage (or large extraction region) is considered. The formulas derived correct the effect of the acceleration regions in a MALDI ion source and after the reflectron before detecting ions.     

Development of a supercritical fluid extractor coupled with a time-of-flight mass spectrometer for online detection of extracts.

A combined apparatus of a supercritical CO2 extractor (SFE) and a time-of-flight mass spectrometer (TOF-MS) was developed aiming at the direct analysis of extracts. A fused-silica capillary acts as both a pressure restrictor and an effluent injection nozzle into the TOF-MS. The tip of the nozzle was narrowed by melting and abrasion so that a greater pressure drop occurred at the tip. In the TOF-MS chamber, differential pumping between the main and ionization chamber kept the pressure in the ionization chamber at around 10(-3) Pa when the SFE pressure was at 9.7 to 29.4 MPa. The TOF-MS performance, a mass resolution of 263 at m/z = 146, and a sensitivity of 1.6 ng (p-dichlorobenzene) were certified by direct injection of a standard organic solution. Online detection of SFE effluent containing naphthalene, p-dichlorobenzene, phenanthrene and pyrene were successfully performed by the TOF-MS only for 48000 ionization cycles corresponding to 7.5 s.     

Femtosecond time-resolved photoelectron-photoion coincidence imaging of multiphoton multichannel photodynamics in NO2

The multiphoton multichannel photodynamics of NO(2) has been studied using femtosecond time-resolved coincidence imaging. A novel photoelectron-photoion coincidence imaging machine was developed at the laboratory in Amsterdam employing velocity map imaging and "slow" charged particle extraction using additional electron and ion optics. The NO(2) photodynamics was studied using a two color pump-probe scheme with femtosecond pulses at 400 and 266 nm. The multiphoton excitation produces both NO(2) (+) parent ions and NO(+) fragment ions. Here we mainly present the time dependent photoelectron images in coincidence with NO(2) (+) or NO(+) and the (NO(+),e) photoelectron versus fragment ion kinetic energy correlations. The coincidence photoelectron spectra and the correlated energy distributions make it possible to assign the different dissociation pathways involved. Nonadiabatic dynamics between the ground state and the A (2)B(2) state after absorption of a 400 nm photon is reflected in the transient photoelectron spectrum of the NO(2) (+) parent ion. Furthermore, Rydberg states are believed to be used as "stepping" states responsible for the rather narrow and well-separated photoelectron spectra in the NO(2) (+) parent ion. Slow statistical and fast direct fragmentation of NO(2) (+) after prompt photoelectron ejection is observed leading to formation of NO(+)+O. Fragmentation from both the ground state and the electronically excited a (3)B(2) and b (3)A(2) states of NO(2) (+) is observed. At short pump probe delay times, the dominant multiphoton pathway for NO(+) formation is a 3x400 nm+1x266 nm excitation. At long delay times (>500 fs) two multiphoton pathways are observed. The dominant pathway is a 1x400 nm+2x266 nm photon excitation giving rise to very slow electrons and ions. A second pathway is a 3x400 nm photon absorption to NO(2) Rydberg states followed by dissociation toward neutral electronically and vibrationally excited NO(A (2)Sigma,v=1) fragments, ionized by one 266 nm photon absorption. As is shown in the present study, even though the pump-probe transients are rather featureless the photoelectron-photoion coincidence images show a complex time varying dynamics in NO(2). We present the potential of our novel coincidence imaging machine to unravel in unprecedented detail the various competing pathways in femtosecond time-resolved multichannel multiphoton dynamics of molecules.     

Negative‐ion/positive‐ion coincidence spectroscopy as a tool to identify anionic fragments: The case of core‐excited CHF3

We have studied the dissociation of the trifluoromethane molecule, CHF₃, into negative ionic fragments at the C 1s and F 1s edges. The measurements were performed by detecting coincidences between negative and positive ions. We observed five different negative ions: F^?, H^?, C^?, CF^?, and F₂^?. Their production was confirmed by the analysis of triple coincidence events (negative‐ion/positive‐ion/positive‐ion or NIPIPI coincidences) that were recorded with cleaner signals than those of the negative‐ion/positive‐ion coincidences. The intensities of the most intense NIPIPI coincidence channels were recorded as a function of photon energy across the C 1s and F 1s excitations and ionization thresholds. We also observed dissociation channels involving the formation of one negative ion and three positive ions. Our results demonstrate that negative‐ion/positive‐ion coincidence spectroscopy is a very sensitive method to observe anions, which at inner‐shell edges are up to three orders of magnitude less probable dissociation products than cations.     

Outermost and inner-shell electronic properties of ClC(O)SCH2CH3 studied using HeI photoelectron spectroscopy and synchrotron radiation

A study of valence electronic properties of S-ethyl chlorothioformate (S-ethyl chloromethanethioate), ClC(O)SCH(2)CH(3), using HeI photoelectron spectra (PES) and synchrotron radiation is presented. Moreover, the photon impact excitation and dissociation dynamics of ClC(O)SCH(2)CH(3) excited at the S 2p and Cl 2p levels are elucidated by analyzing the total ion yield (TIY) spectra and time-of-flight mass spectra acquired in multicoincidence mode [photoelectron-photoion coincidence (PEPICO) and photoelectron-photoion-photoion coincidence (PEPIPICO)]. The HeI photoelectron spectrum is dominated by features associated with lone-pair electrons from the ClC(O)S- group, the HOMO at 9.84 eV being assigned to the n(π)(S) sulfur lone-pair orbital. Whereas the formation of C(2)H(5)(+) ion dominates the fragmentation in the valence energy region, the most abundant ion formed in both the S and Cl 2p energy ranges is C(2)H(3)(+). Comparison with related XC(O)SR (X = H, F, Cl and R = -CH(3), -C(2)H(5)) species reveals the impact of the alkyl chain on the photodissociation behavior of S-alkyl (halo)thioformates.