15N Chemical shielding in glycyl tripeptides: measurement by solid-state NMR and correlation with X-ray structure

15N chemical shielding parameters are reported for central glycyl residues in crystallographically characterized tripeptides with alpha-helix, beta-strand, polyglycine II (3(1)-helix), and extended structures. Accurate values of the shielding components (2-5 ppm) are determined from MAS and stationary spectra of peptides containing [2-(13)C,(15)N]Gly. Two dipolar couplings, (1)H-(15)N and (13)C(alpha)-(15)N, are used to examine (15)N shielding tensor orientations in the molecular frame and the results indicate that the delta(11), delta(33) plane of the shielding tensor is not coincident with the peptide plane. The observed isotropic shifts, which vary over a range of 13 ppm, depend on hydrogen bonding (direct and indirect) and local conformation. Tensor spans, delta(span) = delta(11) - delta(33), and their deviations from axial symmetry, delta(dev) = delta(22) - delta(33), vary over a larger range and are grouped according to 2 degrees structure. Augmented by previously reported (13)C(alpha) shielding parameters, a prediction scheme for the 2 degrees structure of glycyl residues in proteins based on shielding parameters is proposed.     

Structure-composition relations for the partly disordered Hume-Rothery phase Ir7+7deltaZn97-11delta (0.31< or =delta< or =0.58)

The crystal structure, its variation within the homogeneity range and some physical properties of the new zinc-rich, partly disordered phase Ir7+7deltaZn97-11delta (0.31< or =delta< or =0.58) are reported. The structures of three phases with distinct composition were determined by means of single crystal X-ray diffraction. Ir7+7deltaZn97-11delta exhibits a significant homogeneity range, adopts a complex gamma-brass related cubic structure (cF403-406), is stable up to 1201(2) K, and transforms sluggishly below 1048(4) K into a phase with 394 atoms in the monoclinic primitive unit cell. It is a diamagnetic, moderate metallic conductor. Six distinguishable clusters consisting of 22-29 atoms comprise the structure. The clusters are situated about the 16 high symmetry points of the cubic F lattice. The structure can be subdivided into two partial structures, one with constant composition IrZn5 and 192 atoms per unit cell and a second being significantly richer in zinc with variable composition and 211-214 atoms per unit cell. The meandering triply periodic minimal surface of two interpenetrating diamond-like nets separates the compositionally variable from its complementary invariant part. The phase width is coupled with substitutional and positional disorder. A comprehensive analysis of composition-dependent site occupancy factors reveals a linear correlation between the various types of disorder which can be conclusively interpreted in terms of an incoherent intergrowth of distinctive partial structures in variable proportions on a length scale comparable to the size of the approximately 2 nm large unit cell. On the basis of the structural findings we derive the structure chemically meaningful formula Ir7+7delta)Zn97-11delta which quantitatively accounts for the interrelation between substitutional and positional disorder and provides a measure for the homogeneity range in structural terms.     

Observation of hierarchical chiral structures in 8-nitrospiropyran monolayers

The adsorption and self-organization of racemic mixture of 8-nitrospiropyran (SP8) molecules on Au(111) surfaces was studied by scanning tunneling microscopy (STM) in ultrahigh vacuum (UHV). The SP8 enantiomers, in spite of their low-symmetric and nonplanar molecular structures, formed well-ordered monolayers on Au(111). In the monolayers, we found two types of enantiomorphous, i.e., mirror-imaged, 2D chiral domains, denoted as lambda and delta phases. Both phases consist of periodically packed chiral quatrefoils. In the lambda domain, the quatrefoils are counterclockwise folded, while in the delta domain, the quatrefoils are clockwise folded. High-resolution STM images revealed that each chiral quatrefoil contains four heterochiral dimers and that each dimer is composed of two antiparallelly packed homochiral SP8 molecules. Therefore both of the two mirror-imaged 2D chiral structures are not chirally pure but racemic 2D crystals. A domain boundary, which serves as the glide reflection line between a lambda domain and a delta domain, was also observed along the [11] direction of the Au(111) substrate.     

Comparison of pharmacological effects of tetrahydrocannabinols and their 11-hydroxy-metabolites in mice

Pharmacological effects (catalepsy, hypothermia, pentobarbital-induced sleep prolongation, anticonvulsant and analgesic effects) of delta 8- and delta 9-tetrahydrocannabinols, and their 11-hydroxy-metabolites were evaluated and compared in mice. delta 9-Tetrahydrocannabinol and 11-hydroxy-delta 9-tetrahydrocannabinol exhibited somewhat greater effects than did delta 8-tetrahydrocannabinol and 11-hydroxy-delta 8-tetrahydrocannabinol, respectively, in all pharmacological indices tested. Greater effects of 11-hydroxy-metabolites than those of tetrahydrocannabinols were also demonstrated.     

Molecular structures of arachno-decaborane derivatives 6,9-X2B8H10 (X = CH2, NH, Se) including a gas-phase electron-diffraction study of 6,9-C2B8H14

The molecular structures of the three heterodecaboranes arachno-6,9-C2B8H14, arachno-6,9-N2B8H12, and arachno-6,9-Se2B8H10 have been determined by ab initio MO theory. In addition, the structure of arachno-6,9-C2B8H14 was experimentally determined using gas-phase electron diffraction (GED). The accuracy of all four of these structures has been confirmed by the good agreement of the (11)B chemical shifts calculated at the GIAO-MP2 level with the experimental values. A comparison of the GIAO-HF and GIAO-MP2 methods shows that for these heteroborane clusters, electron correlation effects on the computed delta((11)B) values are quite substantial and that it is necessary to go beyond the HF level in the NMR computation.     

Structure determination of soybean and wheat glucosylceramides by tandem mass spectrometry

Glucosylceramide (GluCer) is a major sphingolipid of plant tissue and, thus, abundant in nature and in dietary food sources. The lipid backbones of mammalian GluCer (sphingosine, d18:1(delta4), and ceramide) induce cell death (apoptosis) and inhibit colon carcinogenesis, it is critical to know the structures of GluCer present in plants as a first step toward understanding this potential link between diet and cancer. This study characterized the molecular species of GluCer from soybean and wheat by low-resolution, high-resolution and tandem mass spectrometry. Soybean GluCer was comprised primarily (>95%) of ceramide with 4,8-sphingadiene (d18:2(delta4,delta8)) and alpha-hydroxypalmitic acid (h16:0); the remainder had the same backbone with h18:0, h20:0, h22:0 and h24:0 fatty acids. Wheat GluCer had three major ceramide, d18:2(delta4,delta8) with h16:0, d18:1(delta8) with h16:0 and d18: 2(delta4,delta8) with h20:0, and smaller amounts of other homologs. These backbones differ from those of mammalian sphingolipids, which often have a delta4-double bond (but rarely a delta8-double bond), and have alpha-hydroxy fatty acids in only some cases. Previously unexplained fragmentations that were diagnostic for the type of sphingoid base backbone (i.e. by homolytic cleavage of the doubly allylic C-6-C-7 bond to yield a stable distonic allylic radical cation and an allylic radical neutral) were also identified. Hence this method should be useful in the identification of double bonds in sphingolipids, and structure-function relationships between sphingolipids and colon carcinogenesis.     

Single-crystal studies of peptide prolyl and glycyl 15N shielding tensors

15N shielding tensors were determined for the central peptide groups in GGV, AGG, and APG by single-crystal NMR. We find that the angle between the downfield component (delta11) and the N-H or the N-C(delta) (pro) bonds is in the range of 20-23 degrees and in accord with previous solid-state NMR measurements. However, AGG, unlike APG or GGV, has a distorted peptide plane, and delta11 lies approximately in the plane of N, C(alpha), and H rather than in the peptide plane defined by heavy atoms. Accurate orientations of delta22 and delta33 were determined, and the usual assumption that delta22 is along the peptide normal was found only in APG which has a highly nonaxial tensor. More generally, delta22 and delta33 are rotated about the delta11 axis (36 degrees in GGV). These results are compared with DFT calculations to gain a structural understanding of the effects of intermolecular interactions on shielding tensor principal components and orientations. Trimeric clusters containing H-bonded neighbors predict the orientations of the principal components within 2-3 degrees, but calculated principal components are less quantitative. Possible reasons for this disagreement are explored.     

A solid-state nitrogen-15 NMR and ab initio study of nitrobenzenes

Insight into the unexpectedly small range of isotropic nitrogen chemical shifts in nitrobenzene derivatives is gained through measurements of the chemical shift (CS) tensor by solid-state NMR experiments and ab initio molecular orbital (MO) and density functional theory (DFT) calculations. The principal components, delta(ii), of the (15)N CS tensors have been measured for nitrobenzene, 4-nitroaniline, 4-nitrotoluene, 4-nitroanisole, 4-nitroacetophenone, nitromesitylene, and 2,4,6-tri-tert-butylnitrobenzene. No obvious correlations of the delta(ii) values with traditional reactivity parameters were observed. The CS tensor components change significantly for the para-substituted nitrobenzenes, but these variations nearly cancel to yield isotropic shifts that fall in a range of only 3 ppm. Ab initio calculations of the delta(ii) values at the HF level are in poor agreement with the experimental values, whereas MP2 calculations and DFT calculations employing the B3LYP functional are in better agreement with experiment. The calculated (B3LYP/6-311G) delta(ii) values follow a trend in which delta(11) and delta(33) increase while delta(22) decreases with the accepted electron withdrawing ability of the para substituent. These changes tend to cancel yielding a variation in delta(iso) of only 4 ppm. These calculations indicate that the CS tensor has the same orientation as the carbon CS tensor in the isoelectronic benzoate anion: delta(11) bisects the O-N-O angle, delta(33) is perpendicular to the NO(2) plane, and delta(22) is in the NO(2) plane and perpendicular to delta(11).     

A vibrational study of di-i-propoxyphosphoryl benzylisothiourea

The Fourier transform infrared and Raman spectra of di-i-propoxyphosphoryl benzylisothiourea (DPB) (1) in the solid state and in solutions of CCl4, CHCl3, CHBr3, CH2Cl2, C2H4Cl2, C2H4Br2 and THF were studied. In the IR spectra, the effects of different concentrations were also investigated. The behavior of the nu(NH), delta(NH), delta(HNH), nu(C=N) and nu(P=O) normal modes suggests the existence of a tautomerism between the phosphorylamine (I) and N-phosphorylimine (II) structures: [structures: see text] The data show the presence of different delta(NH) and delta(HNH) bendings and nu(C=N) normal modes in the solid state as a result of inter and intramolecular hydrogen bonding. The experimental approximate frequencies assignments were done for this compound, and were confirmed by a normal coordinate analysis carried out for several fragments of phosphorylamine and N-phosphorylimine structures.     

Correlations between 31P chemical shift anisotropy and molecular structure in polycrystalline O,O'-dialkyldithiophosphate zinc(II) and nickel(II) complexes: 31P CP/MAS NMR and ab initio quantum mechanical calculation studies

Different potassium salts and zinc(II) and nickel(II) O,O'-dialkyldithiophosphate complexes were studied by solid-state 31P CP/MAS and static NMR and ab initio quantum mechanical calculations. Spectra were obtained at different spinning frequencies, and the intensities of the spinning sidebands were used to estimate the chemical shift anisotropy parameters. Useful correlations between the shapes of the 31P chemical shift tensor and the type of ligand were found: terminal ligands have negative values of the skew kappa, while bridging and ionic ligands have positive values for this parameter. The experimental results were compared with known X-ray diffraction structures for some of these complexes as well as with ab initio quantum mechanical calculations, and a useful correlation between the delta22 component of the 31P chemical shift tensor and the S-P-S bond angle in the O,O'-dialkyldithiophoshate zinc(II) and nickel(II) complexes was found: delta22 increases more than 50 ppm with the increase of S-P-S bond angle from ca. 100 degrees to 120 degrees , while the other two principal values of the tensor, delta11 and delta33, are almost conserved. This eventually leads to the change in sign for kappa in the bridging type of ligand, which generally has a larger S-P-S bond angle than the terminally bound O,O'-dialkyldithiophosphate group forming chelating four-membered P(ss)Me heterocycles.     

Fractionation and metabolic turnover of carbon and nitrogen stable isotopes in black fly larvae

Diet-tissue fractionation factors and metabolic turnover rates of delta15N and delta13C were assessed in laboratory-reared black fly (Simulium vittatum IS-7) larvae fed isotopically distinct diets. Five treatments consisted of using food with different delta15N signatures throughout the experiments (19-26 days), a sixth shifted from a low to high delta15N signature diet (uptake) on day 14, and the last shifted from a high to low delta15N signature diet (elimination) on day 14. In the larvae, diet-tissue fractionation factors for delta13C, which were in steady state with food, ranged from -0.61 to 2.0, with a median of 1.87. The delta15N diet-tissue fractionation factors were mostly negative, ranging from +2.85 to -24.96 per thousand, with a single positive value from the elimination treatment in which larval delta15N did not achieve steady state with the food. Diet-tissue fractionation factors also had a significant negative relationship (r2 = 0.98) with delta15N values in the food suggesting that nitrogen diet-tissue fractionation factors are 15N concentration-dependent. The delta15N of shed head capsules and feces were enriched in 15N and could be mechanisms for elimination of 15N by the larvae. For delta15N, metabolic turnover values based on the Hesslein model were highly consistent (0.40 to 0.43 delta15N*day(-1)) between uptake and elimination phases and across experiments and were an order of magnitude greater than growth rates. The rapid turnover of nitrogen in black fly larvae, which was orders of magnitude greater than measured in vertebrates, makes them an excellent indicator of short-term changes in nitrogen inputs to aquatic systems.     

Macropolyhedral boron-containing cluster chemistry. The reversible disassembly and reassembly of the hexagonal pyramidal {B7} feature in the [S2B18H19]- anion

The [S(2)B(18)H(19)](-) anion 1, from syn-B(18)H(22) 2 with NaH and elemental sulfur, has an unusual arachno-type eleven-vertex {SB(10)} subcluster that has an open hexagonal pyramidal {B(7)} structural feature. This is conjoined, with two boron atoms in common, to a second {SB(10)} subcluster of conventional nido eleven-vertex geometry. Protonation of 1 forms neutral [S(2)B(18)H(20)] 4. Subsequent deprotonation of 4 yields the fluxional [S(2)B(18)H(19)](-) anion 5, which is isomeric with 1. Neutral 4and anion 5 do not have the {B(7)} hexagonal pyramidal feature. Neutral 4 consists of conventional nido eleven-vertex {SB(10)} and arachno ten-vertex {SB(9)} subclusters conjoined with a single spiro boron atom in common. Anion 5 is closely related to 4, but with an additional inter-boron intercluster link. Anion 5 spontaneously reverts to anion 1 over a few hours at room temperature, remarkable in that the open {B(7)} hexagonal pyramid is regenerated. DFT B3LYP/6-31G* calculations suggest definitive structures for 4 and 5 that are substantiated by agreement between observed NMR delta((11)B) values and boron nuclear shielding as calculated by the GIAO approach on the DFT-calculated structures. Extension of this approach additionally defines transition states and intermediates for the fluxionality of 5, and also for the reassembly of the starting anion 1, together with its {B(7)} feature, from fluxional 5. The fluxionality of 5 involves the inter-subcluster transfer of a {BH} unit. The reassembly of 1 from 5 involves a DSD rearrangement and two successive hydrogen-atom hops. Confidence in the application of this method to these large macropolyhedral assemblies is afforded in the first instance by good agreement between delta((11)B)(OBS) and delta((11)B)(CALC) for the structurally characterised original anion 1, the only species amongst these to be crystallographically established.     

Self-assembly of tetrahedral and trigonal antiprismatic clusters [Fe4(L4)4] and [Fe6(L5)6] on the basis of trigonal tris-bidentate chelators

In a one-pot reaction, the tetranuclear iron chelate complex [Fe4(L4)4] 6 was generated from benzene-1,3,5-tricarboxylic acid trichloride (4), bis-tert-butyl malonate (5a), methyllithium, and iron(II) dichloride under aerobic conditions. Alternatively, hexanuclear iron chelate complex [Fe(L5)6] 7 was formed starting from bis-para-tolyl malonate (5b) by employing identical reaction conditions to those applied for the synthesis of 6. The clusters 6 and 7 are present as racemic mixtures of homoconfigurational (delta,delta,delta,delta)/(lambda,lambda,lambda,lambda)-fac or (delta,delta,delta,delta,delta,delta)/(lambda,lambda,lambda,lambda,lambda,lambda)-fac stereoisomers. The structures of 6 and 7 were unequivocally resolved by single-crystal X-ray analyses. The all-iron(III) character of 6 and 7 was determined by M?ssbauer spectroscopy.     

A study of the 17O carbonyl chemical shifts in substituted benzaldehydes

An analysis of 17O carbonyl chemical shifts of 50 substituted benzaldehydes leads to an empirical equation, delta(cal)(17O) = 564.0 + (sigma)(delta)o + (sigma)(delta)m + (sigma)(delta)p + C, for calculating 17O chemical shifts. This equation is based on a linear regression analysis using 11 substituent parameters and leads to good conformity with the expected data.     

Quantum chemical calculations on structural models of the catalytic site of chymotrypsin: comparison of calculated results with experimental data from NMR spectroscopy

Hybrid density functional quantum mechanical calculations were used to study the strength of the hydrogen bond between His(57) N(delta)(1) and Asp(102) O(delta)(1) in chymotrypsin and how it changes along the reaction coordinate. Comparison of experimental shifts with the results of chemical shift calculations on a variety of small molecules, including species containing very strong hydrogen bonds, has validated the overall approach and provided the means for calibrating and correcting the calculated values. Models of the active site of chymotrypsin in its resting state and tetrahedral intermediate state were derived from high-resolution X-ray structures. The distance between His(57) N(delta)(1) and Asp(102) O(delta)(1) in each model was varied between 2.77 A (weak hydrogen bond) and 2.50 A (extremely strong hydrogen bond), and the one-dimensional potential energy surface of the hydrogen-bonded proton (or deuteron/triton) was determined. The zero-point energy, probability distribution, and chemical shift were determined for each distance. Calculated values for NMR chemical shifts, NMR chemical shift differences between (1)H and (3)H, and (2)H/(1)H fractionation factors were compared with published experimental values. Energies provided by the calculations indicated that the hydrogen bond between His(57) N(delta)(1) and Asp(102) O(delta)(1) in the chymotrypsin active site increases in strength by 11 kcal mol(-)(1) in going from the resting state of the enzyme to the tetrahedral intermediate state. This result confirms the hypothesis that the strengthened hydrogen bond plays an important role in lowering the energy of the transition state and, hence, in the catalytic efficiency of the enzyme. Models of the transition state that best fit the experimental data are consistent with a "strong" hydrogen bond between His(57) N(delta)(1) and Asp(102) O(delta)(1) but apparently not a "low-barrier" or "very strong" hydrogen bond.     

A portable automated system for trace gas sampling in the field and stable isotope analysis in the laboratory

A computer-controllable mobile system is presented which enables the automatic collection of 33 air samples in the field and the subsequent analysis for delta13C and delta18O stable isotope ratios of a carbon-containing trace gas in the laboratory, e.g. CO2, CO or CH4. The system includes a manifold gas source input for profile sampling and an infrared gas analyzer for in situ CO2 concentration measurements. Measurements of delta13C and delta18O of all 33 samples can run unattended and take less than six hours for CO2. Laboratory tests with three gases (compressed air with different pCO2 and stable isotope compositions) showed a measurement precision of 0.03 per thousand for delta13C and 0.02 per thousand for delta18O of CO2 (standard error (SE), n = 11). A field test of our system, in which 66 air samples were collected within a 24-hour period above grassland, showed a correlation of 0.99 (r2) between the inverse of pCO2 and delta13C of CO2. Storage of samples until analysis is possible for about 1 week; this can be an important factor for sampling in remote areas. A wider range of applications in the field is open with our system, since sampling and analysis of CO and CH4 for stable isotope composition is also possible. Samples of compressed air had a measurement precision (SE, n = 33) of 0.03 per thousand for delta13C and of 0.04 per thousand for delta18O on CO and of 0.07 per thousand for delta13C on CH4. Our system should therefore further facilitate research of trace gases in the context of the carbon cycle in the field, and opens many other possible applications with carbon- and possibly non-carbon-containing trace gases.     

Resolution of chiral, tetrahedral M4L6 metal-ligand hosts

The supramolecular metal-ligand assemblies of M416 stoichiometry are chiral (M = GaIII, AlIII, InIII, FeIII, TiIV, or GeIV, H41 = N,N'-bis(2,3-dihydroxybenzoyl)-1,5-diaminonaphthalene). The resolution process of delta delta delta delta- and lambda lambda lambda lambda-[M(4)1(6)]12- by the chiral cation S-nicotinium (S-nic+) is described for the Ga(III), Al(III), and Fe(III) assemblies, and the resolution is shown to be proton dependent. From a methanol solution of M(acac)3, H(4)1, S-nicI, and KOH, the delta delta delta delta-KH3(S-nic)7[(S-nic) subset M(4)1(6)] complexes precipitate, and the lambda lambda lambda lambda-K6(S-nic)5[(S-nic) subset M(4)1(6)] complexes subsequently can be isolated from the supernatant. Ion exchange enables the isolation of the (NEt4(+))(12), (NMe4(+))(12), and K+(12) salts of the resolved structures, which have been characterized by CD and NMR spectroscopies. Resolution can also be accomplished with 1 equiv of NEt4+ blocking the cavity interior, demonstrating that external binding sites are responsible for the difference in S-nic+ enantiomer interactions. Circular dichroism data demonstrate that the (NMe4(+))(12) and (NEt4(+))(12) salts of the resolved [Ga(4)1(6)]12- and [Al(4)1(6)]12- structures retain their chirality over extended periods of time (>20 d) at room temperature; heating the (NEt4(+))(12)[Ga(4)1(6)] assembly to 75 degrees C also had no effect on its CD spectrum. Finally, experiments with the resolved K(12)[Ga(4)1(6)] assemblies point to the role of a guest in stabilizing the resolved framework.     

Comparative study of weak interactions in molecular crystals: H-H bonds vs hydrogen bonds

The crystal structures of tetraphenylphosphonium squarate, bianthrone, and bis(benzophenone)azine are shown to contain a variety of C-H(delta+)...(delta+)H-C interactions, as well as a variety of C-H...O and C-H...C(pi) interactions. Each of these molecules possesses interactions that can possibly be characterized as either H-H bonds or weak hydrogen bonds based on the first four criteria proposed by Koch and Popelier. These interactions have been completely characterized topologically after the multipole refinement of the structures. It appears that weak interactions of the form C-H(delta+)...(delta+)H-C possess certain correlations between the various properties of the electron density at the bond critical points. The coexistence of the three types of interactions makes it possible to establish similarities and differences in the correlations of these weak interactions. This all leads to a better understanding of H-H interactions and how they fit into the hierarchy of weak interactions.     

Structural determination of three new eudesmanolides from Inula helenium

Ten sesquiterpenens were isolated from Inula helenium. Among them, three eudesmanolides: 15-hydroxy-11betaH-eudesm-4-en-8beta,12-olide (1), 3alpha-hydroxy-11betaH-eudesm-5-en-8beta,12-olide (2) and 2beta, 11alpha-dihydroxy-eudesm-5-en-8beta,12-olide (3) are new compounds. Their chemical structures were determined by spectral methods including 2D NMR.     

Determination of boron isotopic variations in aquatic systems with negative thermal ionization mass spectrometry as a tracer for anthropogenic influences

A technique for precise boron isotope ratio measurements with a high detection power has been developed by negative thermal ionization mass spectrometry (NTIMS). Relative standard deviations in the range of 0.03-0.3% have been obtained for the determination of the (11)B/(10)B isotope ratio using nanogram amounts of boron. Ba(OH)(2) has been applied as ionization promoter for the formation of negative thermal ions. By adding MgCl(2) better reproducibilities of the measurement have been achieved. A possible interference of BO(-)(2) ions at mass number 42 by CNO(-) could be excluded by the sample preparation technique used. Contrary to other NTI techniques no dependence of the measured isotope ratio on the boron amount used has been observed. Anthropogenic and natural saline influences in ground water have been successfully identified by boron isotope ratio determinations with this NTIMS method, due to the different isotopic composition of boron in natural and anthropogenic substances. In sewage, the boron isotope ratio is substantially influenced by washing powder, which contains low (11)B/(10)B ratios (expressed in delta(11)B values normalized to the standard reference material NIST SRM 951). In contaminated ground water, low delta(11)B values are normally correlated with high boron and high chloride concentrations. On the other hand, delta(11)B shifts to higher values in less contaminated samples. For ground water with saline influences, only the delta(11)B determination, and not the boron or chloride content, allowed the correct identification of this natural source of contamination.