A three-state surface-confined molecular switch with multiple channel outputs

A self-assembled monolayer of a tetrathiafulvalene derivative on indium tin oxide is shown to operate as a ternary redox switch in which the magnetic and optical outputs are employed to provide a readout of the state. This surface-confined molecular switch exhibits excellent reversibility and stability and is thus promising for the development of molecular electronics.     

Theoretical study of the photochemistry of a reversible three-state bis-thiaxanthylidene molecular switch

The ground- and the lowest singlet excited-state potential energy surfaces of the bis-thiaxanthylidene (3) molecular switch are investigated using a density functional method specifically designed to treat molecular systems typified by strong non-dynamic electron correlation. The results of the theoretical calculations suggest that the unique ability of substituted bis-thiaxanthylidenes to switch between three states of luminescence-non-fluorescent state, blue fluorescent state, and red fluorescent state-can be explained by specific features on the excited state potential energy surface: the potential barrier around the Franck-Condon point of the anti-folded conformer and the existence of conical intersection in the vicinity of the syn-folded conformer. It is suggested that the twisted conformer, if made more stable via chemical modification, should fluoresce in the near-infrared region (λ≈740-760 nm), thus offering a possibility for a four-state switching of luminescence in a single-component molecular system.     

A supramolecular switch with molecular memory

A supramolecular switch is demonstrated that maintains a stable ON state even in the absence of guest at room temperature.     

Dual modulation of a molecular switch with exceptional chiroptical properties

The ability to modulate the chiroptical properties of optically active molecules induced by external stimuli such as light, heat, and electrical fields allows for the design and development of molecular switches, memory devices, sensors, and photonic devices. A helical o-terphenyl compound functionalized with photoresponsive azobenzene and electroactive imide groups is designed as a dual-mode chiroptical molecular switch. Its exceptional optical activity (e.g., [alpha]436 = -9500) can be changed and modulated through photoisomerization of the azobenzene moiety using UV and visible light. Reversible modulation by electrochemical means was also achieved through the redox reaction occurring at the imide group. Large chiroptical read-out signals were observed during the redox cycles as indicated by the molar ellipticity values as high as 285,000 deg.cm2.dmol-1. Exceptionally high optical activity and large responses to both light and electrical bias make this chiral molecule suitable for the development of new molecular switches, sensors, and other optical devices.     

Structural characterization of a photoinduced molecular switch

The crystal structures in both irradiated and nonirradiated states of a photoinduced molecular switch based on the spin-crossover phenomenon are presented. From the structural point of view, the light-induced metastable high-spin state of the spin-crossover complex [Fe(phen)2(NCS)2] (phen = 1,10-phenanthroline) shows significant differences with the low-spin state but also with the thermally induced high-spin state.     

A chiroptical molecular switch with perfect stereocontrol

A modified version of the first generation unidirectional molecular motor showed >99% stereoselectivity in photo-induced isomerizations in both directions, thus functioning as a perfect chiroptical molecular switch.     

Engineered bacteriorhodopsin: a molecular scale potential switch

Bacteriorhodopsin, BR, is a natural, photoresponsive, biomolecule that has potential application in data storage, imaging and sensing. Being membrane-bound, however, it is coupled with metallic electronic surfaces only with some difficulty. We report herein a facile method to generate uniformly orientated, anchored and active monolayers of BR on metallic electrodes. In the present study, the cytoplasmic side of the BR is equipped with an engineered cysteine to achieve largely lipid-free, orientation-specific, highly stable, covalent immobilization on gold surfaces. By using non-invasive Kelvin probe force microscopy, it is possible to measure the light-induced proton accumulation at the extracellular protein surface at truly molecular scales. The intimate probe-BR interaction possible on lipid removal facilitates the detection of photoinduced surface potential switching substantially larger ((20.4 ± 7.5) mV) with functional single delipidated mutant BR trimers than for the wild-type protein. The proton pumping detected is also notably highly unidirectional with the orientated protein.     

Modulating chemical reactivity using a photoresponsive molecular switch

The kinetics of an alkylation reaction are used to probe the effect of an electron-withdrawing pyridinium group on the nucleophilicity of a free pyridine in a photoresponsive dithienylcyclopentene (DTCP) derivative in order to demonstrate effective and reversible control over chemical reactivity. The kinetic data support the hypothesis that the ring-open isomer of the DTCP (1o) is more reactive than its ring-closed counterpart (1c) due to electronic communication between the two pyridine groups existing only in the latter isomer. The rates of the alkylation reactions of bis(pyridine) versions of the photochromic compounds are also evaluated to provide a better understanding of the through-bond and the through-space effects of the groups located at the ends of the linearly conjugated π-electron backbone. The use of the two DTCP isomers (1o and 1c) as nucleophilic catalysts is also suggested in preliminary investigations.     

A tuneable self-complexing molecular switch

[reaction: see text] A new self-complexing donor-acceptor system has been synthesized that has the propensity to undergo intramolecular decomplexation under thermal and electrochemical perturbation and upon addition of a competitive guest for the cyclophane's cavity.     

Towards a fluorescent molecular switch for nucleic acid biosensing

A novel fluorescent molecular switch for the detection of nucleic acid hybridization has been explored in relation to the development of a structure that would be amenable for operation when immobilized for solid-phase analyses. The structure was prepared by self-assembly, and used Neutravidin as the central multivalent docking molecule, a newly synthesized biotinylated long-chain linker for intercalating dye that was modified with thiazole orange (TO) at one end, and a biotinylated probe oligonucleotide. Self-assembly of the biotinylated components on adjacent Neutravidin binding sites allowed for physical placement of an oligonucleotide probe molecule next to tethered TO. The TO located at the end of the flexible linker chain was available to intercalate, and could report if a duplex structure was formed by a probe–target interaction by means of fluorescence intensity. Subsequently, regeneration of the single-stranded probe was possible without loss of the intercalator to solution. The switch constructs were assembled in solution and subsequently immobilized onto biotin functionalized optical fibers to complete the sensor design. Solution-phase fluorescence lifetime data showed a biexponential behavior for switch constructs, suggesting intercalation as well as a significant secondary binding mode for the immobilized TO. It was found that the secondary binding mechanism for the dye to DNA could be decreased, thus shifting the dye to intercalative binding modes, by adjusting the solution conditions to a pH below the pI of Neutravidin, and by increasing the ionic strength of the buffer. Preliminary work demonstrated that it was possible to achieve up to a fivefold increase in fluorescence intensity on hybridization to the target.     

A molecular shuttle for driving a multilevel fluorescence switch

A [2]rotaxane-based molecular shuttle comprised a macrocycle mechanically interlocked to a chemical "dumbbell" has been prepared in high yields by a thermodynamically controlled, template-induced clipping procedure. This molecular shuttle has two different recognition sites, namely, -NH2 +- and amide, separated by a phenyl unit. The macrocycle exhibits high selectivity for the -NH2+- recognition sites in the protonated form through noncovalent interactions, which include 1) N+-H...O hydrogen bonds; 2) C-H...O interactions between the CH2NH2+CH2 protons on the thread and the oligo(ethylene glycol) unit in the macrocycle; 3) pi...pi stacking interaction between macrocycle and aromatic unit. Upon deprotonation of the [2]rotaxane the macrocycle glides to the amide recognition site due to the hydrogen bonds between the -CONH- group and the oligo(ethylene glycol) unit in the macrocycle. The deprotonation process requires about 10 equivalents of base (iPr2NEt) in polar acetone, while the amount of base is only 1.2 equivalents in apolar tetrachloroethane. Upon addition of Li+, the conformation of the [2]rotaxane was altered as a result of the collective interactions of 1) hydrogen bonds between pyridine nitrogen and amide hydrogen atoms; 2) coordination between the oligo(ethylene glycol) unit, amide oxygen atom and Li+ cation. Then, when Zn2+ ions are added, the macrocycle returns to the deprotonated -NH- recognition site owing to coordination of the macrocycle and -NH- from the axle with the Zn2+ ion. All the above-mentioned movement processes are reversible through the alternate addition of TFA/iPr2NEt, Li/[12]-crown-4 and Zn2+/ethylenediaminetetraacetate (EDTA), by virtue of hydrogen bonding and metal-ion complexation. Significantly, the three independent movement processes are all accompanied by fluorescent responses: 1) complete repression in the protonated form; 2) low-level expression in the deprotonated form; 3) medium-level expression following addition of Li+; 4) high-level expression on complexation with Zn2+.     

A molecular switch with pH-controlled absolutely switchable dual-mode fluorescence

[reaction: see text] A simple-structured molecule (L1) bearing anthracene fragments at both ends of diethylenetriamine chain behaves as a fluorescent molecular switch with pH-controlled absolutely switchable dual-mode fluorescence in water; each mode consists of monomer (pH <9) and excimer (pH >9) emissions.     

Mesoporous silica thin film mechanized with a DNAzyme-based molecular switch for electrochemical biosensing

A novel electroanalytical strategy for copper and ascorbic acid detection was developed by using a nanostructured electrode surface mechanized with a DNAzyme-based molecular gate. This sensing interface was constructed by first electrodeposition of a mesoporous silica thin film on Au electrodes and further assembly of a Cu(II)-specific DNAzyme. The biosensing assay was based on the Cu(II) and ascorbic acid responsible activation of the DNAzyme, which acted as a molecular switch able to control the diffusion of the Fe(CN)₆^{3 −/4 −} electrochemical probe through the nanochannels of the mesoporous film.     

Single switch surface hopping for molecular dynamics with transitions

A trajectory surface hopping algorithm is proposed, which stems from a mathematically rigorous analysis of propagation through conical intersections of potential energy surfaces. Since nonadiabatic transitions are only performed when a classical trajectory attains one of its local minimal surface gaps, the algorithm is called single switch surface hopping. Numerical experiments for a two mode Jahn-Teller system are presented, which illustrate the asymptotic justification of the method as well as its good performance in the physically relevant parameter range.     

Ab initio molecular dynamics of excited-state intramolecular proton transfer around a three-state conical intersection in malonaldehyde

Excited-state potential energy surface (PES) characterization is carried out at the CASSCF and MRSDCI levels, followed by ab initio dynamics simulation of excited-state intramolecular proton transfer (ESIPT) on the S2(pipi*) state in malonaldehyde. The proton-transfer transition state lies close to an S2/S1 conical intersection, leading to substantial coupling of proton transfer with electronic relaxation. Proton exchange proceeds freely on S2, but its duration is limited by competition with twisting out of the molecular plane. This rotamerization pathway leads to an intersection of the three lowest singlet states, providing the first detailed report of ab initio dynamics around a three-state intersection (3SI). There is a significant energy barrier to ESIPT on S1, and further pyramidalization of the twisted structure leads to the minimal energy S1/S0 intersection and energetic terminal point of excited-state dynamics. Kinetics and additional mechanistic details of these pathways are discussed. Significant depletion of the spectroscopic state and recovery of the ground state is seen within the first 250 fs after photoexcitation.     

A chemically unlocked binary molecular switch

A highly luminescent and sensitive terbium complex of a ligand comprising of a phthalimide group appended to a DO3A moiety is an active pH sensor that is conditional on its previous pH.