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1.
Magdalena Ma?ecka 《Structural chemistry》2010,21(1):175-184
The intramolecular N–H···O hydrogen bonds in 3-aminomethylene-2 methoxy-5,6-dimethyl-2-oxo-2,3-dihydro-2λ5-[1,2]oxaphosphinin-4-one and its derivatives (F, H, Li, -BeH) were studied by DFT (density functional theory) methods. The
results of calculations were obtained at B3LYP/6-311++G(d,p) level on model species, with the resonance-assisted hydrogen
bonds (RAHB). Topological parameters such an electron density, its Laplacian, kinetic electron energy density, potential electron
energy density, and total electron energy density at the bond critical points (BCP) of H···O/N–H contact bonds from Bader’s ‘Atoms in molecules’ (AIM) theory were analyzed in details. The energy of the N–H···O interactions studied here was found rather weak (E
HB = 2.53–12.08 kcal/mol). The results of AIM ellipticity indicated π-delocalization over all six atoms within ring. 相似文献
2.
Nina I. Giricheva Georgiy V. Girichev Yulia S. Medvedeva Sergey N. Ivanov Vyacheslav M. Petrov 《Structural chemistry》2012,23(3):895-903
A combined gas-phase electron diffraction and quantum chemical (B3LYP/cc-pVTZ, MP2/cc-pVDZ) study of molecular structure of
2,4,6-trinitrobenzenesulfonic acid (2,4,6-tri-NBSA) was carried out. Quantum chemical calculations showed that 2,4,6-tri-NBSA
possesses six conformers, which form three pairs of enantiomers with the relative energy of 0, 4.4/3.9, and 2.5/2.5 kcal/mol.
It was experimentally established that at T = 444(5) K a saturated vapor over 2,4,6-tri-NBSA is, predominantly (up to 93 mol.%), represented by a low-energy enantiomers
II and II′ characterized by intramolecular hydrogen bond between an H atom of the hydroxyl group and one of the O atoms of
the NO2 group. Experimental internuclear distances for the low-energy enantiomers are (?): r
h1(C–C)av. = 1.387(4), r
h1(C–S) = 1.811(6), r
h1(S=O)av. = 1.424(4), r
h1(S–O) = 1.579(4), r
h1(N–O)av. = 1.214(3), r
h1(C–N)av. = 1.491(5). Geometry of the conformer II points on existance of strong steric interactions between SO2OH group and two ortho-nitro groups. Analysis of the orbital interactions between the substituents and benzene ring was carried out. Geometric parameters
and energies of transition states between conformers were calculated (B3LYP). 相似文献
3.
Derivative of 8-hydroxyquinoline i.e. Clioquinol is well known for its antibiotic properties, drug design and coordinating
ability towards metal ion such as Copper(II). The structure of mixed ligand complexes has been investigated using spectral,
elemental and thermal analysis. In vitro anti microbial activity against four bacterial species were performed i.e. Escherichia coli, Pseudomonas aeruginosa, Serratia marcescens, Bacillus substilis and found that synthesized complexes (15–37 mm) were found to be significant potent compared to standard drugs (clioquinol
i.e. 10–26 mm), parental ligands and metal salts employed for complexation. The kinetic parameters such as order of reaction
(n = 0.96–1.49), and the energy of activation (E
a = 3.065–142.9 kJ mol−1), have been calculated using Freeman–Carroll method. The range found for the pre-exponential factor (A), the activation entropy (S* = −91.03 to−102.6 JK−1 mol−1), the activation enthalpy (H* = 0.380–135.15 kJ mol−1), and the free energy (G* = 33.52–222.4 kJ mol−1) of activation reveals that the complexes are more stable. Order of stability of complexes were found to be [Cu(A4)(CQ)OH] · 4H2O > [Cu(A3)(CQ)OH] · 5H2O > [Cu(A1)(CQ)OH] · H2O > [Cu(A2)(CQ)OH] · 3H2O 相似文献
4.
Sibel Kasap Huseyin Tel Sabriye Piskin 《Journal of Radioanalytical and Nuclear Chemistry》2011,289(2):537-544
A spherical polyacrylonitrile–TiO2 composite adsorbent was prepared and its strontium removal potential was investigated. The Langmuir equation fixed well the
equilibrium data. The value of ∆H° = 8.943 kJ/mol and ∆G° = 6.291 kJ/mol at 298 K indicate that the adsorption of strontium onto TiO2/PAN composite adsorbent is an endothermic and non-spontaneous reaction. The kinetic process was described by a pseudo-second-order
rate model very well. 相似文献
5.
Solvent re-orientation process of triplet acetone/methanol complex and intermolecular hydrogen atom abstraction reaction on
the triplet state energy surface, (CH3)2C=O (T1) + CH3OH → (CH3)2C–OH + CH2OH in gas phase, have been investigated by means of density functional theory (DFT) and direct ab initio molecular dynamics
(MD) methods. The static DFT calculation of hydrogen abstraction reaction at the T1 state showed that the transition state is 16.4 and 30.9 kcal/mol lower than the energy levels of S1 and S2 states, respectively, and 9.2 kcal/mol higher than the bottom of T1 state. The product state, (CH3)2C–OH⋯CH2OH, is 8.4 kcal/mol lower in energy than the level of T1 state. The direct ab initio MD calculation showed that the product is rapidly formed within 150 fs and the separated products
(CH3)2C–OH + CH2OH were formed. The mechanism of reaction dynamics of the triplet acetone/methanol complex was discussed on the basis of theoretical
results. 相似文献
6.
Setsuo Kashino Jun‐ichiro Taka Takeo Fukunaga Hiroyuki Ishida 《Acta Crystallographica. Section C, Structural Chemistry》2001,57(5):549-552
A centrosymmetric and short O—H?O hydrogen bond was found in isomorphic crystals of potassium hydrogen trans‐glutaconate monohydrate (potassium hydrogen trans‐pent‐2‐ene‐1,5‐dioate, K+·C5H5O4?·H2O), (I), and rubidium hydrogen trans‐glutaconate monohydrate (rubidium hydrogen trans‐pent‐2‐ene‐1,5‐dioate, Rb+·C5H5O4?·H2O), (II). The O?O distance at room temperature is 2.444 (3) Å in (I), and 2.417 (4) Å in (II). The O?O distance for (I) showed no significant decrease at low temperatures. 相似文献
7.
Hong-Zhen Xie Shi-Jie Huang Jin Zhou Shu-Ping Yu Dan-Yi Wei 《Transition Metal Chemistry》2010,35(7):773-778
Two coordination complexes, namely [Co(phen)(H2O)L]·H2O and [Ni2(phen)2(H2O)2L2]·4H2O (phen = 1,10-phenanthroline, H2L = 1,3-adamantanedicarboxylic acid) have been hydrothermally synthesized and structurally characterized by single crystal
X-ray diffraction. [Co(phen)(H2O)L]·H2O consists of 1D chains of the complex plus lattice H2O molecules. Interchain hydrogen bonds and π–π stacking interactions assemble the 1D chains into 2D layers. [Ni2(phen)2(H2O)2L2]·4H2O is a binuclear complex which is assembled into a 3D supramolecular structure by strong hydrogen bonds and π–π stacking interactions.
Both complexes were characterized by physico-chemical and spectroscopic methods. 相似文献
8.
A new ligand, 3-methyl-4-(p-bromophenyl)-5-(2-pyridyl)-1,2,4-triazole (L) and its complexes, trans-[CuL2(ClO4)2] (1) and cis-[CoL2(H2O)2](ClO4)2·H2O·CH3OH (2), have been synthesized and characterized by UV, IR, electrospray ionization mass spectrum, elemental analyses, and single-crystal
X-ray diffraction methods. In the structure, two L ligands are stabilized by intermolecular π···π interactions between the triazole rings. In the complexes, each L ligand adopts a chelating bidentate mode through N atom of pyridyl group and one N atom of the triazole. Both complexes have
a similar distorted octahedral [MN4O2] core (M = Cu2+ and Co2+) with two ClO4
− ions in the trans position in 1 but two H2O molecules in the cis arrangement in 2. 相似文献
9.
Hue Minh Thi Nguyen Tien Van Pham Hung Van Hoang Pham Tho Hoan Ngo Tuan Cuong 《国际化学动力学杂志》2020,52(2):84-91
Gas-phase mechanism and kinetics of the reactions of the 2-propargyl radical (H2CCCH), an important intermediate in combustion processes, with ammonia were investigated using ab initio molecular orbital theory at the coupled-cluster CCSD(T)//B3LYP/6-311++G(3df,2p) method in conjunction with transition state theory (TST), variational transition state theory (VTST), and Rice–Ramsperger–Kassel–Macus (RRKM) calculations for rate constants. The potential energy surface (PES) constructed shows that the C3H3 + NH3 reaction has four main entrances, including two H-abstraction and two addition channels in which the former are energetically more favorable. The H-abstraction channels occur via energy barriers of 24 (T0/P2) and 26 kcal/mol (T0/P3) forming loose van de Waals complexes, COM_1 (12 kcal/mol) and COM_2 (14 kcal/mol), respectively. These complexes can easily be decomposed via barrier-less processes resulting HCCCH3 + NH2 (P2, 14 kcal/mol) and HCCCH3 + NH2 (P3, 15 kcal/mol), respectively. The additional channels occur initially by formation of two intermediate states, H2CCCHNH3 (35 kcal/mol) and H2CC(NH3)CH (37 kcal/mol) via energy barriers of 37 and 40 kcal/mol at T0/1 and T0/5, respectively, followed by isomerization and decomposition yielding 21 different products. These processes are fully depicted in an as-complete-as-possible PES. The rate constants and product branching ratios for the low-energy channels calculated show that the C3H3 + NH3 reaction is almost pressure-independent. For the temperature range of 300–2000 K, the HCCCH3 + NH2 is the major product, whereas the minor one, HCCCH3 + NH2, has more contribution when temperature increases. Theoretical results on the mechanism and kinetics of the reaction considered may be helpful for future experiments as well as for understanding the role of the propargyl radical in combustion chemistry. 相似文献
10.
The chemical preparation, crystal structure and spectroscopic characterization of [2,6-(C2H5)2C6H3NH3]2H2P2O7 · 2H2O have been reported. The compound crystallizes in the monoclinic system in space group P21/c and cell parameters a = 14.323(2), b = 11.158(3), c = 16.387(2) ? and β = 96.34(3)°; V = 2602.8(9) ?3 and Z = 4. Crystal structure has been determined and refined to R = 0.044, using 3528 independent reflections. The atomic arrangement of the title compound shows anionic layer of formulae
[H2P2O7(H2O)2]
n
2n− stacked along the c-axis. The 2,6-diethylanilinium cations establish on both sides of these inorganic layer hydrogen bonds
so as to contribute to the intralayer cohesion in the network. The different building species are held together by means of
O–H···O and N–H···O intermolecular hydrogen bonds in addition to electrostatic and van der Waals interactions. 相似文献
11.
Banjong Boonchom 《Journal of Thermal Analysis and Calorimetry》2009,98(3):863-871
The thermal decomposition of magnesium hydrogen phosphate trihydrate MgHPO4 · 3H2O was investigated in air atmosphere using TG-DTG-DTA. MgHPO4 · 3H2O decomposes in a single step and its final decomposition product (Mg2P2O7) was obtained. The activation energies of the decomposition step of MgHPO4 · 3H2O were calculated through the isoconversional methods of the Ozawa, Kissinger–Akahira–Sunose (KAS) and Iterative equation,
and the possible conversion function has been estimated through the Coats and Redfern integral equation. The activation energies
calculated for the decomposition reaction by different techniques and methods were found to be consistent. The better kinetic
model of the decomposition reaction for MgHPO4 · 3H2O is the F
1/3 model as a simple n-order reaction of “chemical process or mechanism no-invoking equation”. The thermodynamic functions (ΔH*, ΔG* and ΔS*) of the decomposition reaction are calculated by the activated complex theory and indicate that the process is non-spontaneous
without connecting with the introduction of heat. 相似文献
12.
Sudip K. Mukhopadhyay 《Transition Metal Chemistry》2008,33(6):739-743
The kinetics of the interaction of diethyldithiocarbamate (Et2DTC) with [Pt(dach)(H2O)2]2+ (dach = cis-1,2-diaminocyclohexane) have been studied spectrophotometrically as a function of [Pt(dach)(H2O)2
2+], [Et2DTC] and temperature at a particular pH (4.0). The reaction proceeds via rapid outer sphere association complex formation
followed by two slow consecutive steps. The first step involves the transformation of the outer sphere complex into an inner
sphere complex containing a Pt–S bond and one aqua ligand, while the second step involves chelation when the second aqua ligand
is replaced. The association equilibrium constant K
E and two rate constants k
1 and k
2 have been evaluated. Activation parameters for both the steps have been calculated (∆H
1
# = 66.8 ± 3.7 kJ mol−1, ∆S
1# = −81 ± 12 JK−1 mol−1 and ∆H
2# = 95.1 ± 2.8 kJ mol−1, ∆S
2# = −34.4 ± 9.1 JK−1 mol−1). The low enthalpy of activation and negative entropy of activation indicate an associative mode of activation for both the
steps. 相似文献
13.
Nikolay G. Naumov Alexandra Y. Ledneva Sung-Jin Kim Vladimir E. Fedorov 《Journal of Cluster Science》2009,20(1):225-239
Reaction of polymeric compound Cs4[Re6S8(CN)4S2/2] with aqueous solution of KOH led to formation of trans-[Re6S8(CN)4(OH)2]4− anion which was crystallized in ordered Cs1.68K2.32[Re6S8(CN)4(OH)2] · 2H2O (1a) and disordered Cs1.83K2.17[Re6S8(CN)4(OH)2] · 2H2O (1b) modifications. The presence of two types of apical ligands, inert cyanides and labile hydroxides, opened a way to other
trans-[Re6S8(CN)4L2]
n− rhenium cluster complexes: trans-[Re6S8(CN)4Cl2]4−, trans-[Re6S8(CN)4(H2O)Br]3−, and trans-[Re6S8(CN)4Br2]4−, crystallized as Cs1.84K1.16(H)[Re6S8(CN)4Cl2] (2), Cs1.68K1.32[Re6S8(CN)4(H2O)Br] (3), (Me4N)3(H5O2)[Re6S8(CN)4Br2] (4), and CsK{Cu(H2O)2[Re6S8(CN)4Cl2]} · 4H2O (5) salts. 相似文献
14.
S. X. Xiao J. J. Zhang X. Li L. J. Ye H. W. Gu N. Ren 《Journal of Thermal Analysis and Calorimetry》2010,102(2):813-817
A ternary binuclear complex of dysprosium chloride hexahydrate with m-nitrobenzoic acid and 1,10-phenanthroline, [Dy(m-NBA)3phen]2·4H2O (m-NBA: m-nitrobenzoate; phen: 1,10-phenanthroline) was synthesized. The dissolution enthalpies of [2phen·H2O(s)], [6m-HNBA(s)], [2DyCl3·6H2O(s)], and [Dy(m-NBA)3phen]2·4H2O(s) in the calorimetric solvent (VDMSO:VMeOH = 3:2) were determined by the solution–reaction isoperibol calorimeter at 298.15 K to be
\Updelta\texts H\textmq \Updelta_{\text{s}} H_{\text{m}}^{\theta } [2phen·H2O(s), 298.15 K] = 21.7367 ± 0.3150 kJ·mol−1,
\Updelta\texts H\textmq \Updelta_{\text{s}} H_{\text{m}}^{\theta } [6m-HNBA(s), 298.15 K] = 15.3635 ± 0.2235 kJ·mol−1,
\Updelta\texts H\textmq \Updelta_{\text{s}} H_{\text{m}}^{\theta } [2DyCl3·6H2O(s), 298.15 K] = −203.5331 ± 0.2200 kJ·mol−1, and
\Updelta\texts H\textmq \Updelta_{\text{s}} H_{\text{m}}^{\theta } [[Dy(m-NBA)3phen]2·4H2O(s), 298.15 K] = 53.5965 ± 0.2367 kJ·mol−1, respectively. The enthalpy change of the reaction was determined to be
\Updelta\textr H\textmq = 3 6 9. 4 9 ±0. 5 6 \textkJ·\textmol - 1 . \Updelta_{\text{r}} H_{\text{m}}^{\theta } = 3 6 9. 4 9 \pm 0. 5 6 \;{\text{kJ}}\cdot {\text{mol}}^{ - 1} . According to the above results and the relevant data in the literature, through Hess’ law, the standard molar enthalpy of
formation of [Dy(m-NBA)3phen]2·4H2O(s) was estimated to be
\Updelta\textf H\textmq \Updelta_{\text{f}} H_{\text{m}}^{\theta } [[Dy(m-NBA)3phen]2·4H2O(s), 298.15 K] = −5525 ± 6 kJ·mol−1. 相似文献
15.
S. Tolosa Arroyo A. Hidalgo García M. Moreno Alvero J. A. Sansón Martín 《Structural chemistry》2011,22(4):909-915
A procedure previously described by us is used for the theoretical study of chemical reactions in solution by means of molecular
dynamics simulation, with solute–solvent interaction potentials LJ (12-6-1) derived from ab initio quantum calculations. We
apply the procedure to the case of the neutral hydrolysis of methyl formate, HCOOCH3 + 3H2O → HCOOH + CH3OH + 2H2O in aqueous solution, via concerted and stepwise water-assisted mechanisms. We use the solvent as reaction coordinate, and
the free-energy curves for the calculation of the activation energies. The theoretical calculation for the thermodynamics
of this hydrolysis reaction in aqueous solution, assisted by three water molecules, is in agreement with the available experimental
information. In particular our study gives values of ΔG
≠ = 28.88 and 28.17 kcal/mol for the concerted and stepwise mechanisms, close to the experimental activation barrier of 28.8 kcal/mol,
and a significant improvement over the values of 48.05 and 45.66 kcal/mol found in another similar study using the PCM model. 相似文献
16.
Two new neodymium complexes, [Nd2(abglyH)6(2,2′-bipy)2(H2O)2] · 4H2O 1 and {[Nd(abglyH)3(H2O)2] · (4,4′-bipy) · 7H2O}n
2 (abglyH2 = N-P-acetamidobenzenesulfonyl-glycine acid, 2,2′-bipy = 2,2′-bipyridine, 4,4′-bipy = 4,4′-bipyridine), have been synthesized and
their structures have been measured by X-ray crystallography. In 1, nine-coordinated Nd(III) ions are bridged by two syn–syn bidentate and two tridentate bridging carboxylate groups from four different abglyH− anions to form dinuclear motifs, which are further connected into a 3-D supramolecular framework via hydrogen bonds between
the binuclear motifs and the uncoordinated water molecules. In 2, eight-coordinated Nd(III) ions are linked by six carboxylate groups adopting a syn–syn bidentate bridging fashion to form a 1-D inorganic–organic alternating linear chain. These polymeric chains generate microchannels
extending along the a direction, and these cavities are occupied by discrete tetradecameric water clusters, which interact with their surroundings
and finally furnish the 3-D supramolecular network via hydrogen bonds. At the same time, π–π stacking interactions between
benzene rings from abglyH− anions also play an important role in stabilizing the network. 相似文献
17.
Abstract
The crystal structure of the 2:1 co-crystal of 1,2,5-thiadiazole-3,4-dicarboxylic acid and 4,4′-bipyridine, (C4H2N2O4S)2·C10H8N2, has been determined by X-ray diffraction at the monoclinic space group C2/c with cell parameters of a = 21.388(7) ?, b = 6.735(2) ?, c = 14.877(5) ?, β = 110.431(3)°, and Z = 4. There are one molecule of thiadiazole and a half molecule of bipyridine in the asymmetric unit. The dihedral angle between the pyridine ring planes is 40.5(3)°. Two intramolecular O–H···N [2.730(7) ?] and O–H···O [2.433(6) ?] hydrogen bonds are observed in the thiadiazole molecule. In the crystal structure, the molecules form a unique two-dimensional ladder-type network linked by intermolecular O–H···N [2.704(4) ?] hydrogen bonds and S···O [3.100(5) ?] heteroatom interactions. 相似文献18.
Wen-Kui Dong Jun-Feng Tong Yin-Xia Sun Jian-Chao Wu Jian Yao Shang-Sheng Gong 《Transition Metal Chemistry》2010,35(4):419-426
Two new mono- and dinuclear Cu(II) complexes, namely [CuL1]·0.5H2O (1) and [(Cu2(L2)2)(DMF)]·0.5DMF (2) (H2L1 = 1,2-bis{[(Z)-(3-methyl-5-oxo-1-phenyl-1H-pyrazolidin-4(4H)-yl)(phenyl)]methylene-aminooxy}ethane; H2L2 = 1,3-bis{[(Z)-(3-methyl-5-oxo-1-phenyl-1H-pyrazolidin-4(4H)-yl)(phenyl)] methyleneaminooxy}propane), have been synthesized and characterized by X-ray crystallography. The unit cell
of complex 1 contains two crystallographically independent but chemically identical [CuL1] molecules and one crystalline water molecule, showing a slightly distorted square-planar coordination geometry and forming
a wave-like pattern running along the a-axis via hydrogen bonding and π···π stacking interactions. Complex 2 has a dinuclear structure, comprising two Cu(II) atoms, two completely deprotonated phenolate bisoxime (L2)2− moieties (in the form of enol), and both coordinated and hemi-crystalline DMF molecules. Complex 2 has square-planar and square-pyramidal geometries around the two copper centers, whose basic coordination planes are almost
perpendicular and form an infinite three-dimensional supramolecular network structure involving intermolecular C–H···N, C–H···O,
and C–H···π(Ph) hydrogen bonding and π···π stacking interactions of neighboring pyrazole rings. 相似文献
19.
Abstract
p-Thioacetatebenzoic acid (H2L) and a combination of N-donor ligands such as 4,4′-bipyridine (4,4′-bipy) and 1,3-bi(4-pyridyl)propane (bpp) with metal ions Mn(II) and Ni(II) give rise to two coordination polymers, namely, [Mn(HL)2(bpp)2(H2O)2] n (1), [NiL (4,4′-bipy)(H2O)3] n ·nH2O (2). 1 features an unusual “8” shaped double layer by hydrogen bonds and two different types of helical chains are arrayed alternatively in the 2D double layer framework, which further extends into a 3D supramolecular structure through C–H···O hydrogen bonds. 2 consists of 1D chains which further connect with each other via hydrogen bonds to form the final 3D framework including two different types of helical structure. Photoluminescence study reveals that 1 displays intense structure-related fluorescent emission bands (λ ex = 369 nm) at 414 nm in the solid state at room temperature. Electrochemical property of 2 reveals that the process of the redox is irreversible. 相似文献20.
AnYong Li 《中国科学B辑(英文版)》2008,51(7):623-631
Ab initio quantum chemistry methods were applied to study the bifurcated bent hydrogen bonds Y··· H2CZ (Z = O, S, Se) and Y···H2CZ2 (Z = F, Cl, Br) (Y = Cl−, Br−) at the MP2/6-311++G(d,p) and MP2/6-311++G(2df,2p) levels. The results show that in each complex there are two equivalent
blue-shifted H-bonds Y···H-C, and that the interaction energies and blue shifts are large, the energy of each Y···H-C H-bond
is 15–27 kJ/mol, and Δr(CH) = −0.1 − −0.5 pm and Δv(CH) = 30 − 80 cm−1. The natural bond orbital analysis shows that these blue-shifted H-bonds are caused by three factors: large rehybridization;
small direct intermolecular hyperconjugation and larger indirect intermolecular hyperconjugation; large decrease of intramolecular
hyperconjugation. The topological analysis of electron density shows that in each complex there are three intermolecular critical
points: there is one bond critical point between the acceptor atom Y and each hydrogen, and there is a ring critical point
inside the tetragon YHCH, so these interactions are exactly H-bonding. 相似文献