Sensing Remote Chirality: Stereochemical Determination of β‐, γ‐, and δ‐Chiral Carboxylic Acids

Determining the absolute stereochemisty of small molecules bearing remote nonfunctionalizable stereocenters is a challenging task. Presented is a solution in which appropriately substituted bis(porphyrin) tweezers are used. Complexation of a suitably derivatized β‐, γ‐, or δ‐chiral carboxylic acid to the tweezer induces a predictable helicity of the bis(porphyrin), which is detected as a bisignate Cotton Effect (ECCD). The sign of the ECCD curve is correlated with the absolute stereochemistry of the substrate based on the derived working mnemonics in a predictable manner.     

Rational Design for Cooperative Recognition of Specific Nucleobases Using β‐Cyclodextrin‐Modified DNAs and Fluorescent Ligands on DNA and RNA Scaffolds

We propose a binary fluorimetric method for DNA and RNA analysis by the combined use of two probes rationally designed to work cooperatively. One probe is an oligonucleotide (ODN) conjugate bearing a β‐cyclodextrin (β‐CyD). The other probe is a small reporter ligand, which comprises linked molecules of a nucleobase‐specific heterocycle and an environment‐sensitive fluorophore. The heterocycle of the reporter ligand recognizes a single nucleobase displayed in a gap on the target labeled with the conjugate and, at the same time, the fluorophore moiety forms a luminous inclusion complex with nearby β‐CyD. Three reporter ligands, MNDS (naphthyridine–dansyl linked ligand), MNDB (naphthyridine–DBD), and DPDB (pyridine–DBD), were used for DNA and RNA probing with 3′‐end or 5′‐end modified β‐CyD – ODN conjugates. For the DNA target, the β‐CyD tethered to the 3′‐end of the ODN facing into the gap interacted with the fluorophore sticking out into the major groove of the gap site ( MNDS and DPDB ). Meanwhile the β‐CyD on the 5′‐end of the ODN interacted with the fluorophore in the minor groove ( MNDB and DPDB ). The results obtained by this study could be a guideline for the design of binary DNA/RNA probe systems based on controlling the proximity of functional molecules.     

Structural Analysis and Inclusion Mechanism of Native and Permethylated α‐Cyclodextrin‐Based Rotaxanes Containing Alkylene Axles

Native α‐cyclodextrin‐ (α‐CD) and permethylated α‐CD (PMeCD)‐based rotaxanes with various short alkylene chains as axles can be synthesized through a urea end‐capping method. Native α‐CD tends to form [3]‐ or [5]pseudorotaxanes and not [2]‐ or [4]pseudorotaxanes, which indicates that the coupled CDs act as a single fragment. End‐capping reactions of the pseudorotaxanes with C18 and C24 axle lengths do not occur because the axle termini are covered by the densely stacked CDs. The number of PMeCDs on the pseudorotaxane is flexible and mainly depends on the axle length. Peracetylated α‐CD (PAcCD)‐based rotaxanes are synthesized through O‐acetylation of the α‐CD‐based rotaxanes without any decomposition of the rotaxanated structures. The structures of PMeCD‐based [3]‐ and [4]rotaxanes, and the molecular dynamics calculations on [3]pseudorotaxanes, indicate that the tail face of PMeCDs is regularly directed toward the axle termini. On the basis of the results obtained, it can be concluded that the directions and numbers of CDs in rotaxanes containing short alkylene chains depend on 1) the interactions between CDs, 2) the length of the alkylene axle, and 3) the interactions between the axle end and tail face of the CD.     

Applying Mechanochemistry for Bottom‐Up Synthesis and Host–Guest Surface Modification of Semiconducting Nanocrystals: A Case of Water‐Soluble β‐Cyclodextrin‐Coated Zinc Oxide

Mechanochemistry has recently emerged as an environmentally friendly solventless synthesis method enabling a variety of transformations including those impracticable in solution. However, its application in the synthesis of well‐defined nanomaterials remains very limited. Here, we report a new bottom‐up mechanochemical strategy to rapid mild‐conditions synthesis of organic ligand‐coated ZnO nanocrystals (NCs) and their further host–guest modification with β‐cyclodextrin (β‐CD) leading to water‐soluble amide‐β‐CD‐coated ZnO NCs. The transformations can be achieved by either one‐pot sequential or one‐step three‐component process. The developed bottom‐up methodology is based on employing oxo‐zinc benzamidate, [Zn₄(μ₄‐O)(NHOCPh)₆], as a predesigned molecular precursor undergoing mild solid‐state transformation to ZnO NCs in the presence of water in a rapid, clean and sustainable process.     

POSS end‐linked peptide‐functionalized poly(ɛ‐caprolactone)s and their inclusion complexes with α‐cyclodextrin

In this report, we have synthesized organic/inorganic hybrid peptide–poly(?‐caprolactone) (PCL) conjugates via ring opening polymerization (ROP) of ?‐caprolactone (CL) in the presence of two sequence defined peptide initiators, namely POSS‐Leu‐Aib‐Leu‐NH₂ (POSS: polyhedral oligomeric silsesquioxane; Leu: Leucine; Aib: α‐aminoisobutyric acid) and OMe‐Leu‐Aib‐Leu‐NH₂. Covalent attachment of peptide segments with the PCLs were examined by ¹H and ²⁹Si NMR spectroscopy, matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOF‐MS) and FTIR spectroscopy. Supramolecular inclusion complexations of synthesized peptide‐PCL conjugates with α‐cyclodextrin (α‐CyD) were studied to understand the effect of POSS/OMe‐peptide moieties at the PCL chain ends. Inclusion complexation of peptide‐PCL conjugates with α‐CyD produced linear polypseudorotaxane, confirmed by ¹H NMR, FTIR, powder X‐ray diffraction (PXRD), polarized optical microscopy (POM) and differential scanning calorimetry (DSC). Extent of α‐CyD threading onto the hybrid peptide‐PCL conjugated polymers is less than that of α‐CyD threaded onto the linear PCL. Thus, PCL chains were not fully covered by the host α‐CyD molecules due to the bulky POSS/OMe‐peptide moieties connected with the one edge of the PCL chains. PXRD experiment reveals channel like structures by the synthesized inclusion complexes (ICs). Spherulitic morphologies of POSS/OMe‐peptide‐PCL conjugates were fully destroyed after inclusion complexation with α‐CyD and tiny nanoobjects were produced. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 3643–3651.     

A Universal Strategy for Aptamer‐Based Nanopore Sensing through Host–Guest Interactions inside α‐Hemolysin

Nanopore emerged as a powerful single‐molecule technique over the past two decades, and has shown applications in the stochastic sensing and biophysical studies of individual molecules. Here, we report a versatile strategy for nanopore sensing by employing the combination of aptamers and host–guest interactions. An aptamer is first hybridized with a DNA probe which is modified with a ferrocene?cucurbit[7]uril complex. The presence of analytes causes the aptamer–probe duplex to unwind and release the DNA probe which can quantitatively produce signature current events when translocated through an α‐hemolysin nanopore. The integrated use of magnetic beads can further lower the detection limit by approximately two to three orders of magnitude. Because aptamers have shown robust binding affinities with a wide variety of target molecules, our proposed strategy should be universally applicable for sensing different types of analytes with nanopore sensors.     

Access to Versatile β‐Cyclodextrin Scaffolds through Guest‐Mediated Monoacylation

Herein, we report the selective mono‐derivatization of heptakis[6‐deoxy‐6‐(2‐aminoethylsulfanyl)]‐β‐CD ( 1 ) through a guest‐mediated covalent capture strategy. The use of guests functionalized with cleavable linkers enables the installation of an amine‐orthogonal thiol group on the primary rim of 1 as a handle for further transformations to the β‐CD scaffold. Applying this methodology, two novel monoderivatized β‐CDs were obtained in good yield and high purity. Both of these monoacylated CDs were amenable to facile linker cleavage and further modification at the resulting thiol group. This methodology can be applied towards the synthesis heterofunctionalized β‐CD constructs for analyte sensing, drug delivery, and other applications.     

Allosteric Binding of Capsaicin by a Bis(β‐cyclodextrin)‐2,2′‐bipyridine Receptor

A new β‐cyclodextrin‐based receptor that showed allosteric binding behavior towards capsaicin in aqueous solution was prepared. By NMR titration and nonlinear regression, we obtained binding constants, which increased more than fivefold when an effector (Zn²⁺) was bound to a central 2,2′‐bipyridine that acts as the allosteric center.     

Color Indicator for Supramolecular Polymer Chemistry: Phenolphthalein‐Containing Thermo‐ and pH‐Sensitive N‐(Isopropyl)acrylamide Copolymers and β‐Cyclodextrin Complexation

The copolymerization parameters of N‐(isopropyl)acrylamide ( 1 ) and N‐(2‐hydroxy‐5‐(1‐(4‐hydroxyphenyl)‐3‐oxo‐1,3‐dihydroisobenzofuran‐1‐yl)benzyl)acrylamide ( 2 ) are determined. For both monomers, the homoaddition proceeds slightly faster than the heteroaddition step; however, the polymer formation occurs in a statistic fashion. Copolymers of different compositions are prepared and the cloud points are determined. Thereby, a significant influence of the concentration of monomer 2 and the pH value is found. For the first time, the complexation of polymer attached phenolphthalein by β‐cyclodextrins is shown. Furthermore, it is possible to achieve a decomplexation by the addition of suitable guest molecules. Both procedures can be followed with the naked eye.

     

The Contrasting Recognition Behavior of β‐Cyclodextrin and Its Sulfobutylether Derivative towards 4′,6‐Diamidino‐2‐phenylindole

The noncovalent interactions between 4′, 6‐diamidino‐2‐phenylindole (DAPI) and sulfobutylether β‐cyclodextrin (SBE₇β‐CD) are evaluated by using photochemical measurements and compared with that of native β‐CD. Contrasting recognition behavior and intriguing modulations in the photochemical behavior of DAPI were observed. In particular, a large enhancement in the fluorescence emission and excited‐state lifetime were seen upon binding to SBE₇β‐CD, with the SBE₇β‐CD inclusion complex being approximately 1000 times stronger than that of β‐CD. The ensuing fluorescence “turn on” was demonstrated to be responsive to chemical stimuli, such as metal ions and adamantylanmine (AD). Upon addition of Ca²⁺/AD, nearly quantitative dissociation of the complex was established to regenerate the free dye and result in fluorescence “turn off”. The SO₃^? groups are believed to be critical for the strong and selective binding of the chromophore and the stimuli‐responsive tuning. This is as an important design criterion for the optimization of host–guest properties through supramolecular association, which is relevant for drug‐delivery applications.     

Cyclodextrin‐Modified Zeolites: Host–Guest Surface Chemistry for the Construction of Multifunctional Nanocontainers

The functionalization of nanoporous zeolite L crystals with β‐cyclodextrin (CD) has been demonstrated. The zeolite surface was first modified with amino groups by using two different aminoalkoxysilanes. Then, 1,4‐phenylene diisothiocyanate was reacted with the amino monolayer and used to bind CD heptamine by using its remaining isothiocyanate groups. The use of the different aminoalkoxysilanes, 3‐aminopropyl dimethylethoxysilane (APDMES) and 3‐aminopropyl triethoxysilane (APTES), led to drastic differences in uptake and release properties. Thionine was found to be absorbed and released from amino‐ and CD‐functionalized zeolites when APDMES was used, whereas functionalization by APTES led to complete blockage of the zeolite channels. Fluorescence microscopy showed that the CD groups covalently attached to the zeolite crystals could bind adamantyl‐modified dyes in a specific and reversible manner. This strategy allowed the specific immobilization of His‐tagged proteins by using combined host–guest and His‐tag‐Ni‐nitrilotriacetic acid (NTA) coordination chemistry. Such multifunctional systems have the potential for encapsulation of drug molecules inside the zeolite pores and non‐covalent attachment of other (for example, targeting) ligand molecules on its surface.     

Nanoparticle Vesicles Through Self Assembly of Cyclodextrin‐ and Adamantyl‐Modified Silica

Stable nanoparticle vesicles were for the first time prepared from adamantyl‐ and cyclodextrin (CD)‐modified silica nanoparticles forming host–guest interactions in aqueous solution. Adamantyl‐functionalized nanoparticles were obtained from thiol‐isocyanate reaction of thiol‐modified nanoparticles with 1‐adamantyl isocyanate. The CD modified silica particles were isolated from a reaction of mono‐6‐para‐toluenesulfonyl‐β‐cyclodextrin with the thiol functionalized silica under microwave conditions in basic media. The obtained particles were characterized in respect of agglomeration and self‐assembly behavior in aqueous solution by dynamic light scattering and transmission electron microscopy. The found vesicle structures are exceptionally stable even after evaporation of water. Such inorganic hollow spheres formed through self‐assembly processes may be important for chemical storage and transport. The technique of chemically‐driven assembly is an attractive option to form useful complex structures by tunable agglomeration.

     

Emerging Cubic Chirality in γCD‐MOF for Fabricating Circularly Polarized Luminescent Crystalline Materials and the Size Effect

The chiral feature of γCD‐MOF, and especially the emergent cubic void, was not unveiled so far. Now, through the host–guest interaction between γCD‐MOF and achiral luminophores with different charges and sizes, the unique cubic chirality of the emerging void in γCD‐MOF as well as a size effect on CPL induction are revealed for the first time. Numerous achiral luminophores could be integrated into γCD‐MOF and emitted significantly boosted circularly polarized luminescence. While the small sized luminophores preferred to be loaded into the intrinsic void of γCD, large ones were selectively encapsulated into the cubic void. Interestingly, when the size of the guest luminophores was close to the cube size, it showed strong negative CPL. Otherwise, either positive or negative CPL was induced.     

Ultrasound‐Driven Secondary Self‐Assembly of Amphiphilic β‐Cyclodextrin Dimers

The controlled secondary self‐assembly of amphiphilic molecules in solution is theoretically and practically significant in amphiphilic molecular applications. An amphiphilic β‐cyclodextrin (β‐CD) dimer, namely LA‐(CD)₂, has been synthesized, wherein one lithocholic acid (LA) unit is hydrophobic and two β‐CD units are hydrophilic. In an aqueous solution at room temperature, LA‐(CD)₂ self‐assembles into spherical micelles without ultrasonication. The primary micelles dissociates and then secondarily form self‐assemblies with branched structures under ultrasonication. The branched aggregates revert to primary micelles at high temperature. The ultrasound‐driven secondary self‐assembly is confirmed by transmission electron microscopy, dynamic light scattering, ¹H NMR spectroscopy, and Cu²⁺‐responsive experiments. Furthermore, 2D NOESY NMR and UV/Vis spectroscopy results indicate that the formation of the primary micelles is driven by hydrophilic–hydrophobic interactions, whereas host–guest interactions promote the formation of the secondary assemblies. Additionally, ultrasonication is shown to be able to effectively destroy the primary hydrophilic–hydrophobic balances while enhancing the host–guest interaction between the LA and β‐CD moieties at room temperature.     

Complexation of dodecyl‐substituted poly(acrylate) by linked β‐cyclodextrin dimers and trimers in aqueous solution

Two‐dimensional NOESY ¹H NMR, isothermal titration calorimetric (ITC), and rheological studies of host–guest complexation by β‐cyclodextrin, β‐CD, and the β‐CD groups of the linked β‐CD dimers, β‐CD₂ur and β‐CD₂su and trimers, β‐CD₃bz and β‐CDen₃bz, of the dodecyl, C12, substituents of the 3.0% substituted poly(acrylate), PAAC12, in aqueous solution are reported. Complexations by β‐CD, β‐CD₂ur, β‐CD₂su, β‐CD₃bz, and β‐CDen₃bz of the C12 substituents of PAAC12 in 0.2 wt % solution exhibit complexation constants 10^?4K₁₁ (298.2 K) = 0.83, 5.80, 4.40, 15.0, and 1.50 dm³ mol^?1, respectively. (The corresponding ΔH₁₁ and TΔS₁₁ show a linear relationship.) The rheologically determined zero‐shear viscosities of 3.3 wt % aqueous solutions of PAAC12 alone and in the presence of β‐CD, β‐CD₂ur, β‐CD₂su, β‐CD₃bz, and β‐CDen₃bz (where the β‐CD groups and C12 substituents are equimolar) are 0.016, 0.03, 0.12, 0.25, 0.12, and 0.08 Pa s (298.2 K), respectively, and show PAAC12 to form interstrand cross‐links through complexation. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2015 , 53, 1278–1286     

Noncovalently connected micelles based on a β‐cyclodextrin‐containing polymer and adamantane end‐capped poly(ε‐caprolactone) via host–guest interactions

New random copolymers, poly(N‐vinyl‐2‐pyrrolidone‐co‐mono‐6‐deoxy‐6‐methacrylate ethylamino‐β‐cyclodextrin) (PnvpCD) bearing pendent β‐cyclodextrin (CD) groups were synthesized. PnvpCD formed soluble graft‐like polymer complex with adamantane (AD) end‐capped poly(ε‐caprolactone) (PclAD) in their common solvent N‐methyl‐2‐pyrrolidone driven by the inclusion interactions between the CD and AD groups. The formation of the graft complex has been confirmed by viscometry, dynamic light scattering (DLS), and isothermal titration calorimeter. The graft complex self‐assembled further into noncovalently connected micelles in water, which is a selective solvent for the main chain PnvpCD. Transmission electron microscopy, DLS, and atomic force microscopy have been used to investigate the structure and morphology of the resultant micelles. A unique “multicore” structure of the micelles, in which small PclAD domains scattered within the micelles, was obtained under nonequilibrium conditions in the preparation. However, the micelles prepared in a condition close to equilibrium possess an ordinary core‐shell structure. In both cases, the core and shell are believed to be connected by the AD‐CD inclusion complexation. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 4267–4278, 2009     

Encapsulation of AGE‐Breaker Alagebrium by Cucurbit[7]uril Improved the Stability of Both Its Carbonyl α‐Hydrogen and Thiazolium C2‐Hydrogen

As determined by both ¹H NMR and UV/Vis spectroscopic titration, ESI‐MS, isothermal titration calorimetry, and DFT molecular modeling, advanced glycation end products (AGE) breaker alagebrium (ALA) formed 1:1 guest–host inclusion complexes with cucurbit[7]uril (CB[7]), with a binding affinity, K_a, in the order of magnitude of 10⁵ m ^?1, thermodynamically driven by both enthalpy (ΔH=?6.79 kcal mol^?1) and entropy (TΔS=1.21 kcal mol^?1). For the first time, a dramatic inhibition of keto–enol tautomerism of the carbonyl α‐hydrogen of ALA has been observed, as evidenced by over an order of magnitude decrease of both the first step rate constant, k₁, and the second step rate constant, k₂, during hydrogen/deuterium exchange in D₂O. Meanwhile, as expected, the reactivity of C2‐hydrogen was also inhibited significantly, with an upshift of 2.09 pK_a units. This discovery will not only provide an emerging host molecule to modulate keto–enol tautomerism, but also potentially lead to a novel supramolecular formulation of AGE‐breaker ALA for improved stability and therapeutic efficacy.     

Modulating the Nucleated Self‐Assembly of Tri‐β3‐Peptides Using Cucurbit[n]urils

The modulation of the hierarchical nucleated self‐assembly of tri‐β³‐peptides has been studied. β³‐Tyrosine provided a handle to control the assembly process through host‐guest interactions with CB[7] and CB[8]. By varying the cavity size from CB[7] to CB[8] distinct phases of assembling tri‐β³‐peptides were arrested. Given the limited size of the CB[7] cavity, only one aromatic β³‐tyrosine can be simultaneously hosted and, hence, CB[7] was primarily acting as an inhibitor of self‐assembly. In strong contrast, the larger CB[8] can form a ternary complex with two aromatic amino acids and hence CB[8] was acting primarily as cross‐linker of multiple fibers and promoting the formation of larger aggregates. General insights on modulating supramolecular assembly can lead to new ways to introduce functionality in supramolecular polymers.