The relationship between the chemical structures of dihydropyrazine derivatives and DNA strand-breakage activity

Dihydropyrazine, a compound derived from sugars, possesses DNA strand-breakage activity. The relationship between the activity as assayed using pBR 322 ccc-DNA and the chemical structures of derivatives of dihydropyrazine (DHPs) has been investigated. The addition of Cu(2+) enhanced the activity remarkably. The introduction of a methyl or phenyl group onto the DHP ring or a cyclohexyl group fused onto the DHP ring also increased the activity. These properties indicated that the activity was due to the facility of electron release from the DHP ring, followed by radical generation. The determination of ionization potential and electrostatic potential values, and bond dissociation energy via semi-empirical MO calculations suggested strongly that the activity is induced by a DHP ring structure that contains a configuration suitable for hyperconjugation.     

The Synthesis and Herbicidal Evaluation of Fluorine-Containing Phenoxyacetoxyalkylphosphonate Derivatives

To investigate the influence of a fluorine moiety on the biological activity of phenoxyacetoxyalkylphosphonates, a series of fluorine-containing phenoxyacetoxyalkylphosphonates were synthesized and screened for herbicidal activity in a greenhouse. The majority of the title compounds showed better preemergence activity than postemergence activity against the test plants, especially on monocotyledon. Compound 5l exhibited notable activity. Results showed that by introducing a fluorine moiety to the parent structure of phenoxyacetoxyalkylphosphonates, a series of new compounds with satisfactory herbicidal activity could be synthesized. A reasonable combination of a fluorine moiety and other substituents on the benzene ring had a great influence on the herbicidal activity.     

Water Activity Dependence of Lipases in Non-aqueous Biocatalysis

Eleven lipases are tested and it was found that lipases can be divided into three types according to water activity dependence. The first type is lipase that has low water activity dependence and works in a low water activity, its performance changes little with the change of water activity. The optimum water activity is 0.19 and Newlase F (Rhizopus niveus), lipase FAP-15 (Rhizopus oryzae) belong to this type. The second type is lipase that has medium water activity dependence and its performance changes with the change of water activity. Most lipases belong to this type and the optimum water activity in this type is about 0.60. The third type is lipase that has a high water activity dependence and works only in a high water activity (a _w  > 0.75). WGL (wheat germ) belongs to this type and the optimum water activity is 0.90. The relationship between enantioselectivity and water activity is also discussed and the enantioselectivity seems to be independent of water activity. And we also compared the two control methods of water activity, it was found that the method which add solid salt hydrates to the reaction mixture (method II) is more stable and effective throughout the reaction than the method that pre-equilibrate via the vapor phase (method I). The addition concentration of salt hydrates is also investigated and the optimum concentration is 1 g/l.     

Endo- and aminopeptidase activities of rat cathepsin H.

Employing soluble denatured protein substrates and their derivatives, the proteolytic activity of rat cathepsin H was investigated. The enzyme showed aminopeptidase activity which sequentially released amino acid from the N-terminal of the substrate. The aminopeptidase activity did not act on N alpha-acetylated peptides and showed moderate ionic-strength dependence when methionyl-methylcoumarylamide was employed as a substrate. These results indicate that the activity essentially requires an N-terminal free amino group of the substrate and recognizes it electrostatically to some extent. On the other hand, the enzyme was also indicated to exhibit endopeptidase activity by employing appropriate N alpha-acetylated peptide substrates. In contrast to the aminopeptidase activity, the endopeptidase activity showed rather strict specificity, preferring hydrophobic residues at P2 and P3 sites. Because of the broad specificity and high efficiency of the aminopeptidase activity, it was difficult to directly observe endopeptidase activity in the digestion of large peptide substrates with a free alpha-amino terminal. Thus, this is the first experimental evidence that indicates endopeptidase activity by assigning internal peptide bonds cleaved by this activity. From this data, we proposed a model of the binding site of this enzyme.     

Towards the understanding of the activity of G9a inhibitors: an activity landscape and molecular modeling approach

In this work, we analyze the structure–activity relationships (SAR) of epigenetic inhibitors (lysine mimetics) against lysine methyltransferase (G9a or EHMT2) using a combined activity landscape, molecular docking and molecular dynamics approach. The study was based on a set of 251 G9a inhibitors with reported experimental activity. The activity landscape analysis rapidly led to the identification of activity cliffs, scaffolds hops and other active an inactive molecules with distinct SAR. Structure-based analysis of activity cliffs, scaffold hops and other selected active and inactive G9a inhibitors by means of docking followed by molecular dynamics simulations led to the identification of interactions with key residues involved in activity against G9a, for instance with ASP 1083, LEU 1086, ASP 1088, TYR 1154 and PHE 1158. The outcome of this work is expected to further advance the development of G9a inhibitors.

     

Design of multitarget activity landscapes that capture hierarchical activity cliff distributions

An activity landscape model of a compound data set can be rationalized as a graphical representation that integrates molecular similarity and potency relationships. Activity landscape representations of different design are utilized to aid in the analysis of structure-activity relationships and the selection of informative compounds. Activity landscape models reported thus far focus on a single target (i.e., a single biological activity) or at most two targets, giving rise to selectivity landscapes. For compounds active against more than two targets, landscapes representing multitarget activities are difficult to conceptualize and have not yet been reported. Herein, we present a first activity landscape design that integrates compound potency relationships across multiple targets in a formally consistent manner. These multitarget activity landscapes are based on a general activity cliff classification scheme and are visualized in graph representations, where activity cliffs are represented as edges. Furthermore, the contributions of individual compounds to structure-activity relationship discontinuity across multiple targets are monitored. The methodology has been applied to derive multitarget activity landscapes for compound data sets active against different target families. The resulting landscapes identify single-, dual-, and triple-target activity cliffs and reveal the presence of hierarchical cliff distributions. From these multitarget activity landscapes, compounds forming complex activity cliffs can be readily selected.     

From activity cliffs to activity ridges: informative data structures for SAR analysis

The extraction of SAR information from structurally diverse compound data sets is a challenging task. One of the focal points of systematic SAR analysis is the search for activity cliffs, that is, structurally similar compounds having large potency differences, from which SAR determinants can be deduced. The assessment of SAR information is usually based on pairwise similarity and potency comparisons of data set compounds. As a consequence, activity cliffs are mostly evaluated at a compound pair level. Here, we present an extension of the activity cliff concept by introducing "activity ridges" that are formed by overlapping "combinatorial" activity cliffs between participating compounds, giving rise to ridge-like structures in activity landscapes. Activity ridges are rich in SAR information. In a systematic analysis of 242 compound data sets, we have identified well-defined activity ridges in 71 different sets. In addition, an information-theoretic approach has been devised to characterize the structural composition of activity ridges. Taken together, our results show that activity ridges frequently occur in sets of active compounds and that different categories of ridges can be distinguished on the basis of their structural content. The computational identification of activity ridges provides access to compound subsets having high priority for SAR analysis.     

Interpretation of the measurement results near the detection limit in gamma-ray spectrometry using Bayesian statistics

The requirement that the true value of an activity cannot be negative is used for the transformation of raw observed values, which can be positive or negative, into the expected activity values. The probability distribution of the activity values is a truncated Gaussian distribution, and the expected value and the variance of the activity values are derived from the observed value and its standard deviation. It has been shown that the standard deviation of the activity values is smaller than the standard deviation of the observed value and that the ratio of the standard deviation of the activity values and the expected value is less than unity. Since the expected activity value is larger than the original observed value, and the standard deviation of the activity values is smaller than the standard deviation of the observed value, the additional information, that the activity cannot be negative, leads to an improvement in the result. However, since the expected activity value depends on the standard deviation of the observed value, conservatively assessed standard deviation lead to a bias of the expected activity values.     

导致旋光性根本原因的探讨

旋光性是由结构决定的，手性是一种抽象概念，抽象概念不能决定旋光性，旋光性具有明确的方向性，它必然是由具有明确方向性的结构特征所决定。螺旋结构是具有明确方向性的结构，它是实体不是抽象概念，它与旋光方向和旋光度大小可以联系在一起，螺旋结构才是导致旋光性的根本原因。     

Hydrogenation of olefins by π-arene ruthenium complexes : A role of π-arene ligand in catalytic activity

The divalent ruthenium complexes bearing benzene, mesitylene triphenylbenzene as a π-ligand were prepared and their catalytic activity for olefin hydrogenation was examined. They showed activity in the presence of a small amount of base. Particularly, the complex with triphenylbenzene was found to have extremely high activity. Discussion here is on a role of a π-arene ligand in the activity.     

不同活性焦载体对V2O5/AC催化剂脱硫活性的影响

活性焦载体的选择是制备高活性烟气脱硫催化剂的关键.以四种煤制活性焦(AC)为载体,制得了系列V2O5/AC催化剂.通过脱硫活性评价、催化氧化能力测试和孔结构分析表明,AC表面的高活性氧化位较少,担载V2O5使AC表面产生了新的高活性氧化位,其脱硫活性显著提高;V2O5在具有高比表面积和较大孔容的载体上分散性较好,能够形...     

Transferase and hydrolase activities of phospholipase D from the roots ofAconitum arcuatum

The phospholipase D fromAconitum arcuatum has been studied. The optimum pH values have been determined: 6.3 for the hydrolase activity and 8.0 for the transferase activity. Calcium ions activate the phospholipase D: the hydrolase activity most strongly at 8 and 30 µmole and the transferase activity at 30 µmole. The hydrolase activity of the phospholipase D is not activated by low concentrations of sodium dodecyl sulfate, while the transferase activity is activated to a considerable degree. The results obtained are compared with those on the activation of cabbage phospholipase D.     

Polymer-supported bases. 7. Nucleophilic acyl rearrangements catalyzed by polymer-supported aminopyridine or imidazole bases

Polymer-supported aminopyridine or imidazole catalysts were effective for acyl rearrangements of O-acylated substrates to C-acylated products. Some of the aminopyridine catalysts, which had much higher activity than the imidazole catalyst, exhibited high activity comparable to that of the corresponding soluble catalyst, 4-N, N-dimethylaminopyridine. The activity of the immobilized aminopyridines was studied as a function of the percentage of ring substitution, spacer-chain length, and solvents. The affinity of the substrates for the immobilized catalysts played an important role for the rearrangements. The increased catalytic activity resulted from the increased affinity of the substrates for the catalysts. The activity of the immobilized bases decreased gradually owing to the reaction of the active site with the products as the catalysts were used repeatedly. The treatment of the used catalysts with nucleophiles restored the activity to some extent. The activity decrease can be minimized by shortening a contact time between the catalysts and the products.     

Activation and stabilization of enzymes entrapped into reversed micelles

Observations of the activity of two hydrolyzing enzymes—protease and α-amylase—entrapped inside the reversed micelles formed by surfactants in hexane, benzene, and cyclohexane are reported. The surfactants chosen for this study are: Tween 80, a nonionic surfactant, Cetyl pyridinium chloride, a cationic surfactant, and two anionic surfactants, sodium lauryl sulfate and Aerosol OT. Tween 80 enhances the activity of both protease and α-amylase. Sodium lauryl sulfate and Aerosol OT, which are ionic surfactants, enhance the activity of protease, but inhibit the activity of α-amylase. Cetyl pyridinium chloride, however, enhances the activity of α-amylase, but inhibits the activity of protease. Enhanced activity is generally severalfold greater in comparison to the activity observed in the usual aqueous system in the absence of reversed micelles. It has also been observed that the enhanced activity of the enzymes entrapped inside the reversed micelles remains preserved for a much longer period of time in comparison to the activity in the usual aqueous systems. These observations, which support the view that with proper choice of surfactant and the organic solvent, reversed micelles act like a microreactor that provides a favorable aqueous microenvironment for enzyme activity, have biotechnological overtones.     

电解煤浆制氢阳极的制备及电催化活性研究

将钛片进行预处理, 用处理后的钛片作为电极基体, 然后用循环伏安法在钛基体上沉积制备了Pt/Ti, Pt-Ru/Ti, Pt-Ir/Ti, Pt-Ru-Ir/Ti催化电极, 通过扫描电镜(SEM)、X射线衍射(XRD)、电子能谱(EDS)以及等离子发射光谱(ICP)等方法对所制备电极进行了表征, 包括电极表面形貌、组分的沉积状态、催化层成分组成以及电极寿命等; 在煤浆电解过程中, 采用两电极体系, 对所制备电极的电催化活性进行了测试. 结果表明: 所制备的电极催化活性都高于同面积的铂片电极, 含有Ru, Ir的二元催化电极的活性好于镀铂催化电极. 在一定范围内, 随着Ru元素比例增大, 电极活性增强, 而Ir元素含量过大, 电极活性反而稍微降低, 所以Pt-Ir(1∶0.5)/Ti, Pt-Ru(1∶5)/Ti两电极的催化活性相对较好. 本文所制备的三元催化电极的催化活性低于二元催化电极. Pt-Ru/Ti电极催化活性最好, 相同条件下具有最大的电解电流, H₂的电解效率可达95%以上.     

Production of Mixed-Linkage Beta-Oligosaccharides from Lichenan Using Immobilized Bacillus licheniformis UEB CF Lichenase

Lichenase from Bacillus licheniformis UEB CF was immobilized on Amberlite IR120 H. The immobilization yield and lichenase activity were 87 and 92.81?% of initial activity, respectively. The immobilized enzyme exhibited a shift in the optimal pH from 5.0 to 3.0, but the activity optimal temperature was not affected. The immobilized enzyme showed a residual activity of 50?% after five uses. It also exhibited high storage stability and retained 50?% of its initial activity after 120?days at 4?°C. The main hydrolysis products yielded from lichenan were trisaccharide and tetrasaccharide. The resulting mixed-linkage beta-oligosaccharides could be used as a special nutriment for lactic bacteria.     

Inhibitory analysis of the effect of polycyclic aromatic hydrocarbons on the activity of chitinase by means of liquid chromatography-mass spectrometry of chitin oligosaccharides

The analytical method of determining enzyme activity by liquid chromatography-mass spectrometry (LC/MS) was developed and applied for investigation of the effect of polycyclic aromatic hydrocarbons (PAHs) on the enzyme activity of chitinase. The measurement of chitinase activity by LC/MS is useful in order to use the nonderivatized substrate, which can show in vivo chitinase activity. Substrate consumption and product formation were monitored in order to determine chitinase activity. It was shown that, for the first time, in vitro addition of PAHs inhibited the activity of chitinase in a noncompetitive manner. The IC₅₀ value of benzo[a]pyrene was 1.4 μM, and PAHs containing four or more aromatic rings showed the same or higher inhibitory effect, whereas PAHs with a lower number of aromatic rings showed lower inhibition of the chitinase activity than benzo[a]pyrene.     

Activity Coefficients of Individual Ions from Titration Data

It is shown that the activity coefficients of the anions resulting from the dissociation of a weak polyprotic acid can be obtained from titration data. Activity coefficients are determined in terms of the activity coefficient of the undissociated acid. The extracted activity coefficients are also dependent on the pH scale adopted in the titration process and are considered as operational coefficients. The computational procedure uses an exact equation representing the titration curve and a nonlinear least-squares fitting procedure. As an illustration, the activity coefficients of the anions of succinic acid are determined. The method also allows study of the variation of the activity coefficients with the ionic strength in a straightforward manner.     

Nematocidal activity of long alkyl chain amides, amines, and their derivatives on dog roundworm larvae.

The nematocidal activity of amides and amines having a long alkyl chain against the second-stage larva of dog roundworm, Toxocara canis, was examined. Long chain acyl amides with smaller substituents on the nitrogen showed stronger activity and the activity of cyclic amine amides was stronger than that of acyclic ones. In a series of homologous amides, the activity was dependent on the alkyl chain length: it reached a maximum at an optimal chain length and decreased in both shorter and longer homologues. The relationship between the activity and hydrophobicity of the homologues was analysed by the use of the bilinear model. The hydrophobicity of a compound, which gives a maximal activity, was similar for all neutral amides, but amides which have an additional amine group in the molecule had different values. Tertiary amines and their salts having a long alkyl chain also showed nematocidal activities comparable to those of the corresponding amides. The salts killed the larva at concentrations lower than their critical micell concentration, suggesting that they behave as a single molecule for the nematocidal action.     

氯过氧化物酶活性中心结构域中Mn2+与酶催化行为的关系

通过乙二胺四乙酸二钠(EDTA)配位竞争反应结合石墨炉原子吸收及电感耦合等离子体发射检测结果,为氯过氧化物酶(CPO)活性中心血红素丙酸根与金属Mn2+配位结合提供了更直接的证据;基于Mn2+移除前后CPO的紫外特征吸收光谱、圆二色谱以及氯化活性和过氧化活性的变化,阐明了Mn2+的存在对于保持酶活性中心的结构域、稳定CPO的优势构象具有一定作用,是酶分子表现活力所必需的结构元素.本研究还发现移除Mn2+前后CPO血红素活性中心微环境的变化是一个可逆过程,重新引入Mn2+后活性可恢复,并且以外源性Ag+和Cr3+替代Mn2+后,CPO的氯化活性和过氧化活性分别比天然态的酶有所改善,为通过化学修饰提高CPO的催化活性提供了新的途径.