Intramolecular Oxidative O‐Demethylation of an Oxoferryl Porphyrin Complexed with a Per‐O‐methylated β‐Cyclodextrin Dimer

The intramolecular oxidation of ROCH₃ to ROCH₂OH, where the latter compound spontaneously decomposed to ROH and HCHO, was observed during the reaction of the supramolecular complex (met‐hemoCD3) with cumene hydroperoxide in aqueous solution. Met‐hemoCD3 is composed of meso‐tetrakis(4‐sulfonatophenyl)porphinatoiron(III) (Fe^IIITPPS) and a per‐O‐methylated β‐cyclodextrin dimer having an ‐OCH₂PyCH₂O‐ linker (Py=pyridine‐3,5‐diyl). The O=Fe^IVTPPS complex was formed by the reaction of met‐hemoCD3 with cumene hydroperoxide, and isolated by gel‐filtration chromatography. Although the isolated O=Fe^IVTPPS complex in the cyclodextrin cage was stable in aqueous solution at 25 °C, it was gradually converted to Fe^IITPPS (t_1/2=7.6 h). This conversion was accompanied by oxidative O‐demethylation of an OCH₃ group in the cyclodextrin dimer. The results indicated that hydrogen abstraction by O=Fe^IVTPPS from ROCH₃ yields HO‐Fe^IIITPPS and ROCH₂^.. This was followed by radical coupling to afford Fe^IITPPS and ROCH₂OH. The hemiacetal (ROCH₂OH) immediately decomposed to ROH and HCHO. This study revealed the ability of oxoferryl porphyrin to induce two‐electron oxidation.     

Hemoglobin as a nitrite anhydrase: modeling methemoglobin-mediated N2O3 formation

Nitrite has recently been recognized as a storage form of NO in blood and as playing a key role in hypoxic vasodilation. The nitrite ion is readily reduced to NO by hemoglobin in red blood cells, which, as it happens, also presents a conundrum. Given NO’s enormous affinity for ferrous heme, a key question concerns how it escapes capture by hemoglobin as it diffuses out of the red cells and to the endothelium, where vasodilation takes place. Dinitrogen trioxide (N₂O₃) has been proposed as a vehicle that transports NO to the endothelium, where it dissociates to NO and NO₂. Although N₂O₃ formation might be readily explained by the reaction Hb‐Fe³⁺+NO₂^?+NO?Hb‐Fe²⁺+N₂O₃, the exact manner in which methemoglobin (Hb‐Fe³⁺), nitrite and NO interact with one another is unclear. Both an “Hb‐Fe³⁺‐NO₂^?+NO” pathway and an “Hb‐Fe³⁺‐NO+NO₂^?” pathway have been proposed. Neither pathway has been established experimentally. Nor has there been any attempt until now to theoretically model N₂O₃ formation, the so‐called nitrite anhydrase reaction. Both pathways have been examined here in a detailed density functional theory (DFT, B3LYP/TZP) study and both have been found to be feasible based on energetics criteria. Modeling the “Hb‐Fe³⁺‐NO₂^?+NO” pathway proved complex. Not only are multiple linkage‐isomeric (N‐ and O‐coordinated) structures conceivable for methemoglobin–nitrite, multiple isomeric forms are also possible for N₂O₃ (the lowest‐energy state has an N? N‐bonded nitronitrosyl structure, O₂N? NO). We considered multiple spin states of methemoglobin–nitrite as well as ferromagnetic and antiferromagnetic coupling of the Fe³⁺ and NO spins. Together, the isomerism and spin variables result in a diabolically complex combinatorial space of reaction pathways. Fortunately, transition states could be successfully calculated for the vast majority of these reaction channels, both M_S=0 and M_S=1. For a six‐coordinate Fe³⁺‐O‐nitrito starting geometry, which is plausible for methemoglobin–nitrite, we found that N₂O₃ formation entails barriers of about 17–20 kcal mol^?1, which is reasonable for a physiologically relevant reaction. For the “Hb‐Fe³⁺‐NO+NO₂^?” pathway, which was also found to be energetically reasonable, our calculations indicate a two‐step mechanism. The first step involves transfer of an electron from NO₂^? to the Fe³⁺–heme–NO center ({FeNO}⁶) , resulting in formation of nitrogen dioxide and an Fe²⁺–heme–NO center ({FeNO}⁷). Subsequent formation of N₂O₃ entails a barrier of only 8.1 kcal mol^?1. From an energetics point of view, the nitrite anhydrase reaction thus is a reasonable proposition. Although it is tempting to interpret our results as favoring the “{FeNO}⁶+NO₂^?” pathway over the “Fe³⁺‐nitrite+NO” pathway, both pathways should be considered energetically reasonable for a biological reaction and it seems inadvisable to favor a unique reaction channel based solely on quantum chemical modeling.     

Pulsed EPR Dipolar Spectroscopy on Spin Pairs with one Highly Anisotropic Spin Center: The Low-Spin FeIII Case

Pulsed electron paramagnetic resonance (EPR) dipolar spectroscopy (PDS) offers several methods for measuring dipolar coupling constants and thus the distance between electron spin centers. Up to now, PDS measurements have been mostly applied to spin centers whose g-anisotropies are moderate and therefore have a negligible effect on the dipolar coupling constants. In contrast, spin centers with large g-anisotropy yield dipolar coupling constants that depend on the g-values. In this case, the usual methods of extracting distances from the raw PDS data cannot be applied. Here, the effect of the g-anisotropy on PDS data is studied in detail on the example of the low-spin Fe³⁺ ion. First, this effect is described theoretically, using the work of Bedilo and Maryasov (Appl. Magn. Reson. 2006 , 30, 683–702) as a basis. Then, two known Fe³⁺/nitroxide compounds and one new Fe³⁺/trityl compound were synthesized and PDS measurements were carried out on them using a method called relaxation induced dipolar modulation enhancement (RIDME). Based on the theoretical results, a RIDME data analysis procedure was developed, which facilitated the extraction of the inter-spin distance and the orientation of the inter-spin vector relative to the Fe³⁺ g-tensor frame from the RIDME data. The accuracy of the determined distances and orientations was confirmed by comparison with MD simulations. This method can thus be applied to the highly relevant class of metalloproteins with, for example, low-spin Fe³⁺ ions.     

Ultrasound mediated green synthesis of rhodanine derivatives: Synthesis,chemical behavior,and antibacterial activity

A variety of rhodanine derivatives were synthesized via a three-component reaction of carbon disulfide, amines, and dialkyl acetylenedicarboxylate in polyethylene glycol under conventional stirring or ultrasound irradiation. The sonochemical-assisted procedure provides an improved and accelerated conversion when compared to the conventional reaction, with increased rate of reaction and quality of product obtained. The product formed, 2a, could be readily converted to bis-rhodanine under microwave conditions. Moreover, the pyranothiazoles 9a,b were prepared from the corresponding rhodanines 2a,b and malononitrile. Fifteen compounds were screened for their antibacterial activities against nine human, animal and plant pathogenic Gram-positive and Gram-negative bacteria using the agar well diffusion method. Out of these derivatives, compounds 2g and 2h were the most effective against all tested bacteria.     

Ox-SLIM: Synthesis of and Site-Specific Labelling with a Highly Hydrophilic Trityl Spin Label

The combination of pulsed dipolar electron paramagnetic resonance spectroscopy (PDS) with site-directed spin labelling is a powerful tool in structural biology. Rational design of trityl-based spin labels has enabled studying biomolecular structures at room temperature and within cells. However, most current trityl spin labels suffer either from aggregation with proteins due to their hydrophobicity, or from bioconjugation groups not suitable for in-cell measurements. Therefore, we introduce here the highly hydrophilic trityl spin label Ox-SLIM. Engineered as a short-linked maleimide, it combines the most recent developments in one single molecule, as it does not aggregate with proteins, exhibits high resistance under in-cell conditions, provides a short linker, and allows for selective and efficient spin labelling via cysteines. Beyond establishing synthetic access to Ox-SLIM, its suitability as a spin label is illustrated and ultimately, highly sensitive PDS measurements are presented down to protein concentrations as low as 45 nm resolving interspin distances of up to 5.5 nm.     

CHARMM general force field: A force field for drug‐like molecules compatible with the CHARMM all‐atom additive biological force fields

The widely used CHARMM additive all‐atom force field includes parameters for proteins, nucleic acids, lipids, and carbohydrates. In the present article, an extension of the CHARMM force field to drug‐like molecules is presented. The resulting CHARMM General Force Field (CGenFF) covers a wide range of chemical groups present in biomolecules and drug‐like molecules, including a large number of heterocyclic scaffolds. The parametrization philosophy behind the force field focuses on quality at the expense of transferability, with the implementation concentrating on an extensible force field. Statistics related to the quality of the parametrization with a focus on experimental validation are presented. Additionally, the parametrization procedure, described fully in the present article in the context of the model systems, pyrrolidine, and 3‐phenoxymethylpyrrolidine will allow users to readily extend the force field to chemical groups that are not explicitly covered in the force field as well as add functional groups to and link together molecules already available in the force field. CGenFF thus makes it possible to perform “all‐CHARMM” simulations on drug‐target interactions thereby extending the utility of CHARMM force fields to medicinally relevant systems. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

Five-membered ring systems with one heteroatom: Synthetic routes,chemical reactivity,and biological properties of furan-carboxamide analogues

This review described the synthetic methods, chemical reactivity and biological applications of furan carboxamide compounds. Furan-carboxamides are reported to have important and variable biological properties. The aim of this review is to highlight the chemistry and biological importance of this class of bioactive compounds. The basic sections covers: structure studies, synthetic methods pathways, synthesis of different heterocycles, reactions and biological applications. The reactions mechanisms of the unexpected products are discussed. The present study covers all the published work on the furan-carboxamides until now.     

Novel methacrylate copolymers with fluorine containing: Synthesis, characterization, reactivity ratios, thermal properties and biological activity

New methacrylate based monomers 2-(4-benzoylphenoxy)-2-oxoethyl-2-methylacrylate (BOEMA), 2-(4-acetylphenoxy)-2-oxoethyl-2-methylacrylate (AOEMA), and 2-[(4-fluorophenyl)amino]-2-oxoethyl-2-methylacrylate (FPAMA), were synthesized first time. The free-radical-initiated copolymerization of AOEMA and BOEMA with FPAMA were carried out in 1,4-dioxane solution at 65 °C using 2,2′-azobisisobutyronitrile (AIBN) as an initiator with different monomer-to-monomer ratios in the feed. The monomers and copolymers were characterized by FTIR, ¹H NMR and ¹³C NMR spectral studies. The copolymer compositions were evaluated by nitrogen content in polymers. The reactivity ratios of the monomers were determined by the application of Fineman-Ross and Kelen-Tudos methods. The analysis of reactivity ratios revealed that BOEMA and AOEMA are less reactive than FPAMA, and copolymers formed are statistically in nature. The molecular weights ( and ) and polydispersity index of the polymers were determined using gel permeation chromatography. Thermogravimetric analysis of the polymers reveals that the thermal stability of the copolymers increases with an increase in the mole fraction of FPAMA in the copolymers. Glass transition temperatures of the copolymers were found to decrease with an increase in the mole fraction of FPAMA in the copolymers. The prepared homo and copolymers were tested for their antimicrobial activity against bacteria, fungi and yeast.     

Long-wavelength boradiazaindacene derivatives with two-photon absorption activity and strong emission: versatile candidates for biological imaging applications

Novel D-π-D-type boradiazaindacene dyes exhibit considerable two-photon absorption cross-section and strong red emission. Cell stained with these dyes show bright intracellular fluorescence. These properties qualify them as competitive candidates for fluorescent bioimaging applications     

Octahedral adducts of dichlorosilane with substituted pyridines: synthesis, reactivity and a comparison of their structures and (29)si NMR chemical shifts

H(2)SiCl(2) and substituted pyridines (Rpy) form adducts of the type all-trans-SiH(2*)Cl(2)2 Rpy. Pyridines with substituents in the 4- (CH(3), C(2)H(5), H(2)C=CH, (CH(3))(3)C, (CH(3))(2)N) and 3-positions (Br) give the colourless solids 1 a-f. The reaction with pyrazine results in the first 1:2 adduct (2) of H(2)SiCl(2) with an electron-deficient heteroaromatic compound. Treatment of 1 d and 1 e with CHCl(3) yields the ionic complexes [SiH(2)(Rpy)(4)]Cl(2*)6 CHCl(3) (Rpy=4-methylpyridine (3 d) and 4-ethylpyridine (3 e)). All products are investigated by single-crystal X-ray diffraction and (29)Si CP/MAS NMR spectroscopy. The Si atoms are found to be situated on centres of symmetry (inversion, rotation), and the Si-N distances vary between 193.3 pm for 1 c (4-(dimethylamino)pyridine complex) and 197.3 pm for 2. Interestingly, the pyridine moieties are coplanar and nearly in an eclipsed position with respect to the SiH(2) units, except for the ethyl-substituted derivative 1 e, which shows a more staggered conformation in the solid state. Calculation of the energy profile for the rotation of one pyridine ring indicates two minima that are separated by only 1.2 kJ mol(-1) and a maximum barrier of 12.5 kJ mol(-1). The (29)Si NMR chemical shifts (delta(iso)) range from -145.2 to -152.2 ppm and correlate with the electron density at the Si atoms, in other words with the +I and +M effects of the substituents. Again, compound 1 e is an exception and shows the highest shielding. The bonding situation at the Si atoms and the (29)Si NMR tensor components are analysed by quantum chemical methods at the density functional theory level. The natural bond orbital analysis indicates polar covalent Si-H bonds and very polar Si-Cl bonds, with the highest bond polarisation being observed for the Si-N interaction, which must be considered a donor-acceptor interaction. An analysis of the topological properties of the electron distribution (AIM) suggests a Lewis structure, thereby supporting this bonding situation.     

Tributyltin(IV) Schiff base complexes with amino acid derivatives: synthesis,characterization and biological activity

The synthesis in one‐pot reactions and structural characterization of six new tri‐n‐butyltin(IV) derivatives of Schiff bases are reported. The compounds are derived from a condensation reaction between l ‐alanine, l ‐valine, l ‐isoleucine, l ‐methionine, l ‐phenylalanine or l ‐tryptophan and 3,5‐di‐tert‐butyl‐2‐hydroxybenzaldehyde. Characterization was completed using elemental analysis, infrared spectroscopy, mass spectrometry, one‐ and two‐dimensional solution NMR (¹H, ¹³C and ¹¹⁹Sn) as well as solid‐state ¹¹⁹Sn NMR. In addition, the crystal structures of three of the compounds were confirmed using single‐crystal X‐ray diffraction. Although five‐coordinated and polymeric in the solid state, the tin compounds are four‐coordinated and monomeric in solution. The coordination environment around the triorganotin units comprises three carbon atoms and two oxygen atoms from two ligands in a trigonal bipyramidal geometry. The anti‐proliferative effect of these compounds on the cervical carcinoma cell lines HeLa, CaSki and ViBo was screened in vitro, the compounds showing cytotoxic activity against all three strains and null or low cytotoxic activity (necrotic) as well. Copyright © 2016 John Wiley & Sons, Ltd.     

Two novel Ag(I) coordination polymers with triazoles derivatives: synthesis,crystal structures and biological activity

Two novel coordination polymers, [Ag(L₁)(NO₃)]_n 1 and [Ag(L₂)₂(ClO₄)]_n 2 [L₁ = 1‐(1‐benzotriazole‐yl‐)triazole, L₂ = 1‐(4‐chloro‐pyridazine‐yl‐)triazole] have been synthesized and characterized. Single‐crystal X‐ray analyses show that the Ag(I) atom is in a four‐coordinated distorted tetrahedron environment, which are linked by the coordinated nitrate group and L₁ into a two‐dimensional network in complex 1 . While in the complex 2 , the Ag(I) is also in a distorted tetrahedron environment consisting of four N atoms to present a one‐dimensional infinite chain, the intermolecular π? π stacking action extends further the repeated units into three‐dimensional topological framework. The biological activities of the title compounds have been studied. The results indicate that two ligands exhibit excellent radical‐scavenging activities and certain fungicidal activities, and both Ag(I) complexes only have good antibacterial activities. Furthermore, the studies on luminescent properties of the complexes in the solid state indicate that the Ag(I) complexes exhibit weaker fluoresce intensity than that of ligands at room temperature. Copyright © 2008 John Wiley & Sons, Ltd.