红外光谱法分析酵母蛋白质的二级结构

采用红外光谱法分析了酵母蛋白质的二级结构。测定了不同温度下酵母酰胺Ⅲ带的一维红外光谱、二阶导数红外光谱及去卷积红外光谱。结果表明:随着测量温度的升高,酵母中的蛋白质α-螺旋结构的红外吸收强度降低;而β-转角结构、无规卷曲结构和β-折叠结构红外吸收强度均有所增加。还研究了酵母酰胺Ⅲ带的二维红外光谱,以确定酵母中蛋白质红外吸收强度的变化次序,进一步证明了酵母蛋白质的β-折叠结构的热不稳定性。     

Pb~(2+)-牛血清白蛋白复合体系中蛋白质二级结构的研究

采用紫外光谱、红外光谱和圆二色谱法研究了Pb2+与牛血清白蛋白(BSA)之间的相互作用和蛋白质微观结构的变化。紫外光谱表明,Pb2+与BSA肽链上的CO存在相互作用,并使蛋白质疏水结构的微环境发生变化;红外光谱研究表明,Pb2+与BSA结合位点可能为—OH和—NH基团,利用二阶导、退卷积和谱线拟合技术对蛋白质红外谱图的酰胺Ⅰ带进行处理推测蛋白质二级结构的变化,结果表明蛋白质α螺旋和β折叠二级结构含量降低,β转角二级结构含量增加;圆二色谱(CD)也表明Pb2+与BSA的结合使蛋白质的构象发生了改变。     

Hg^2＋ -牛血清白蛋白复合体系中蛋白质微观结构的研究

研究了Hg2+在生物体内与牛血清白蛋白相互作用的毒性机理以及蛋白质的微观结构变化.测定了Hg2+与牛血清白蛋白(BSA)复合体系的红外光谱(FT-IR)和圆二色谱(CD),并对图谱进行拟合解析处理.红外光谱实验数据表明Hg2+与BSA发生作用的结合位点可能包括-SH、-OH和-NH基团,采用红外拟合技术对BSA二级结构的变化进行了研究,结果表明蛋白质α-螺旋结构含量降低,β-折叠结构含量升高.圆二色谱图也表明由于一定浓度的Hg2+与BSA结合,从而导致蛋白质的二级结构被破坏,这与拟合红外光谱得到的蛋白质二级结构数据相吻合.Hg2+与牛血清蛋白作用致使蛋白质的构象改变,形成金属离子与蛋白质作用的复合物,因而蛋白质失去活性导致生物体发生病变.     

红外和拉曼光谱用于对丝蛋白构象的研究

动物丝纤维和相关丝蛋白材料的性能与丝蛋白本身的二级结构即构象密切相关。红外光谱和拉曼光谱是研究蛋白质构象的有力手段,因此在丝蛋白结构的研究中也有广泛的应用。本文综述了红外光谱和拉曼光谱在家蚕、野蚕(主要是柞蚕)和蜘蛛丝蛋白研究方面的应用,并对表征丝蛋白各种构象的红外和拉曼特征峰进行了较为全面的归纳总结。     

大豆蛋白的中红外和近红外光谱研究*

大豆蛋白在各领域的应用已得到广泛的关注,因此大豆蛋白及其改性材料在结构性能方面的研究显得越来越重要。中红外光谱(mid-infrared spectroscopy,MIR)和近红外光谱(near-infrared spectroscopy,NIR)正是对蛋白质进行定性定量分析的有力手段。中红外光谱可以有效地分析大豆蛋白在溶液和薄膜中的二级结构以及大豆衍生材料内蛋白质的结构变化情况。近红外光谱则在蛋白质定量分析方面有着独特的优势。本文介绍了运用这两种光谱技术进行研究的一些工作,这些实例表明了中红外和近红外光谱在大豆蛋白研究领域的重要应用价值。     

圆二色光谱分析蛋白质构象的方法及研究进展

介绍了远紫外圆二色光谱数据计算蛋白质二级结构,辨认蛋白质三级结构类型的原理、拟合方法、实验技术。对近紫外圆二色作为光谱探针,研究蛋白质中芳香氨基酸残基、二硫键微环境的变化作了简单介绍。     

蛋白质结构的FT-IR研究进展

随着蛋白质使用领域的增加,迫切需要知道它在不同环境中的结构特征及生物活性。目前,测定蛋白质结构的方法很多,包括X射线衍射技术、圆二色光谱(CD)、质谱、FT-IR等。FT-IR(傅立叶变换光谱)法不仅能够测定不同环境中的蛋白质结构及生物活性,而且能够测定其二级结构的相对含量。本文简要综述FT-IR技术用于蛋白质结构的研究进展。     

利用红外光谱和窗口因子分析研究加热导致的牛血清白蛋白的二级结构变化

用红外光谱和窗口因子分析(WFA)对加热导致的D2O中牛血清白蛋白(BSA)的二级结构变化进行了研究. 常规光谱分析和WFA的结果表明, BSA的结构变化开始于56 ℃, 而二级结构的剧烈变化发生在68~82 ℃, 与α-螺旋片断相连的短链变化发生的温度比其它二级结构变化的发生温度低10 ℃左右. 研究结果表明, WFA在解析溶液里蛋白质的温度相关红外光谱中起重大作用.     

顺磁共振和傅里叶变换红外光谱法研究高温对荒漠苔藓质膜结构影响

运用顺磁共振波谱和原位傅立叶变换显微红外光谱研究了高温对荒漠植物刺叶墙藓不同叶龄水合组织质膜透性和膜蛋白二级结构的影响。自旋标记法研究质膜透性结果表明,处理前野生叶质膜透性普遍高于室内培养获得的原丝体和次生叶,处理后次生叶膜透性变化最大,比处理前增加4倍,其次为原丝体。质膜透性随叶龄增加,变化幅度逐渐降低。红外光谱的二阶求导、傅立叶自解卷积及拟合分峰等结果显示,各叶龄间蛋白质二级结构含量差异较大,表明各龄组织蛋白成分不完全相同;高温处理后次生叶和原丝体α螺旋含量分别比对照增加40%和16%;其它叶龄组织二级结构含量变化范围小,表明热胁迫下老龄组织蛋白质二级结构稳定。膜透性和膜蛋白二级结构分析证明,膜透性和蛋白质稳定性呈正相关,指示蛋白质组成和含量不同是造成各龄组织不同耐热性的主要原因之一。     

圆二色性测定蛋白质在超细粒子上吸附的构象变化

研究了蛋白质在超细粒子固体表面吸附过程中构象的变化;选择的吸附剂粒径很小,可以直接应用圆二色性光谱测定蛋白质吸附层的二级结构变化;研究了pH、固体吸附表面在蛋白质吸附过程中对蛋白质构象的影响,得到了较好的实验数据,为进一步进行蛋白质吸附机理的理论研究提供了基础。     

Infrared and circular dichroism spectroscopic characterisation of secondary structure components of a water treatment coagulant protein extracted from Moringa oleifera seeds

The secondary structure of a water treatment coagulant protein extracted from Moringa oleifera (MO) seeds has been investigated by Fourier transform infrared spectroscopy (FTIR) in the dried state, and by circular dichroism (CD) spectroscopy. The FTIR and CD spectra indicate that the secondary structure of the protein is dominated by alpha-helix. The FTIR spectrum recorded two distinct and strong absorption bands at 1656 cm(-1) and 1542 cm(-1), in the usual range of absorption of helices of proteins. The CD spectrum showed the shape of mainly alpha-helical secondary structure (estimated to be 58+/-4%) characteristic of negative ellipticity bands near 222 nm and 208 nm and a positive band at 192 nm. The beta-sheet structure composition was estimated to be 10+/-3% whereas unordered structures were around 33%. Changes in solution pH affected the protein secondary structure significantly only at pH values above 10, as indicated by CD spectra, whereas ionic strength had minimal effect. CD data also showed that sodium dodecyl sulphate (SDS) interacts with the coagulant protein and modifies the protein conformation. The surfactant-induced conformational change of the coagulant protein was confirmed by quenching of tryptophan fluorescence of the protein.     

Incorporation of FT-IR spectral data in a computer-assisted prediction of globular protein structure

Currently, much effort is being directed to the determination of the three-dimensional structure of proteins. Two classes of research are of interest; spectrometric techniques which include Fourier transform infrared (FT-IR) spectrometry, and non-spectrometric prediction schemes. The spectra obtained using FT-IR spectrometry, are analyzed to determine the percentages of alpha-helices, beta-pleated sheets, and non-structured coils in a protein. Unfortunately, FT-IR, as well as other spectrometric techniques, cannot be used to determine the exact secondary structure of a protein reliably. Non-spectrometric prediction methods yield information on the exact secondary structure, but are not always accurate. Most prediction methods relate the primary amino acid sequence to the secondary structure of a protein, allowing sequential secondary structure information for the protein examined to be obtained. The goal of this research is to incorporate FT-IR with a prediction method, resulting in an improvement in the accuracy of the prediction.     

Measuring hydrogen–deuterium exchange in protein monolayers

A Fourier transform infrared (FTIR) spectroscopy assay to measure hydrogen–deuterium exchange (HDX) in surface‐adsorbed protein monolayers is developed to provide information on protein tertiary structure, because the typical secondary structural analysis of our surface and solution protein samples proved to be very similar. Adsorbed protein HDX is quantified by exposing the protein to a 50% deuterated NaPO₄ buffer solution and then measuring the normalized intensity change of the amide II band in the FTIR reflection spectrum. When collected as a function of exchange time, this intensity follows the kinetics of the exposure of the protein amides to solvent. HDX kinetics have been obtained for bovine serum albumin (BSA) in solution and adsorbed to gold surfaces. Using experiments designed to allow comparisons between protein in solution and on surfaces, the extent of HDX was found to increase over that observed for BSA in solution, consistent with an increase in the exposure of albumin amide groups and protein unfolding upon adsorption. We also show that BSA adsorbs to the surface of gold in multilayers and that the increase in amide exposure is present only in the first adsorbed monolayer. Published in 2009 by John Wiley & Sons, Ltd.     

Effects of Paraffin Emulsion on the Structure and Properties of Soy Protein Films

In this work, the water-repellent capacity of the paraffin emulsion?covered soy flour (SF) substrate has been studied. Effect of paraffin emulsion content on the structure and properties of the resulting films were studied using laser particle size distribution analyzer, water absorption test, x-ray diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), thermogravimetric analysis (TGA), and tensile testing. Study on the emulsion particle size and stability revealed that the particle size distribution and stability were strongly dependent on the pH of the system. And the optimum pH was 9.9. The incorporation of paraffin emulsion produced at pH 9.9 could markedly enhance the water resistance of films. However, the improvement was realized at the expense of decreased thermal stability and tensile strength of SF?paraffin emulsion films. The addition of paraffin emulsion could destroy the crystalline domains of soy protein and change the protein secondary structure.     

The adsorbed conformation of globular proteins at the air/water interface

External reflection FTIR spectroscopy and surface pressure measurements were used to compare conformational changes in the adsorbed structures of three globular proteins at the air/water interface. Of the three proteins studied, lysozyme, bovine serum albumin and beta-lactoglobulin, lysozyme was unique in its behaviour. Lysozyme adsorption was slow, taking approximately 2.5 h to reach a surface pressure plateau (from a 0.07 mM solution), and led to significant structural change. The FTIR spectra revealed that lysozyme formed a highly networked adsorbed layer of unfolded protein with high antiparallel beta-sheet content and that these changes occurred rapidly (within 10 min). This non-native secondary structure is analogous to that of a 3D heat-set protein gel, suggesting that the adsorbed protein formed a highly networked interfacial layer. Albumin and beta-lactoglobulin adsorbed rapidly (reaching a plateau within 10 min) and with little change to their native secondary structure.     

Fourier transform infrared spectroscopy as a tool to study structural properties of cytochromes P450 (CYPs)

Cytochrome P450 proteins (CYPs) are a big class of heme proteins which are involved in various metabolic processes of living organisms. CYPs are the terminal catalytically active components of monooxygenase systems where the substrate binds and is hydroxylated. In order to be functionally competent, the protein structures of CYPs possess specific properties that must be explored in order to understand structure–function relationships and mechanistic aspects. Fourier transform infrared spectroscopy (FTIR) is one tool that is used to study these structural properties. The application of FTIR spectroscopy to the secondary structures of CYP proteins, protein unfolding, protein–protein interactions and the structure and dynamics of the CYP heme pocket is reviewed. A comparison with other thiolate heme proteins (nitric oxide synthase and chloroperoxidase) is also included. Figure The protein secondary structure, protein unfolding, redox-partner protein–protein interaction, structural changes induced by the reduction of the heme iron, and the structure and dynamics of the active site of cytochromes P450 (CYP) can be studied using Fourier transform infrared spectroscopy (FTIR). FTIR spectroscopy is a good approach for gaining a deeper insight into structure–function relationships in CYPs. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The characterization of biomolecular secondary structures by surface plasmon resonance

Recently there has been considerable interest in using surface plasmon resonance (SPR) for the measurement of conformational changes of immobilized biomolecules that are induced by an exogenous analyte. While a number of studies have shown the analytical utility of such measurements, there has been no report which characterizes the specific secondary structure that actuates the change in SPR signal. The use of SPR to indicate the type of secondary structure present in two immobilized polypeptides, poly-L-lysine (PL) and poly-L-glutamic acid (PGA), and a globular protein, concanavalin A (Con A) is described in this report. The PL, PGA and Con A were modified with N-succinimidyl 3-(2-pyridyldithiol) propionate (SPDP) to introduce disulfide groups to facilitate the attachment onto gold-coated surfaces via self-assembly. Ethanol and 2,2,2-trifluoroethanol (TFE) were used to induce changes in the secondary structure of the immobilized polypeptides and the protein respectively. Using both circular dichroism (CD) and Fourier transform infrared (FTIR) spectroscopies, it has been demonstrated that it is possible to correlate the signal changes observed in SPR to the secondary conformation of the biomolecule. Both CD and FTIR showed that a decrease in SPR signal corresponded to a high content of beta, turn or unordered structures while an increase corresponded to a high alpha-helical content. The sensitivity of the SPR technique is comparable to that obtained in solution with CD and FTIR spectroscopies. These results are the first demonstration that SPR can be used to characterize secondary structures. There is potential, therefore, for SPR to be used as a technique to study secondary conformational changes of immobilized polypeptides and proteins.     

Adsorption-induced conformational changes of proteins onto ceramic particles: differential scanning calorimetry and FTIR analysis

Three model proteins, bovine serum albumin, hen's egg lysozyme and bovine serum fibrinogen, were adsorbed from aqueous solution onto finely dispersed ceramic particles, namely different kinds of alumina and hydroxyapatite particles. The influence of adsorption on protein secondary structure was investigated. The FTIR spectroscopic findings were compared with the results of DSC measurements. In almost all cases it was found that adsorption results in destabilisation and structural loss of the bound protein. A decrease in transition enthalpy is correlated with a loss in alpha-helical structure, which seems to be the most sensitive structure on adsorption-induced rearrangements. A total collapse of structure in the adsorbed proteins was not determined on any ceramic surface. Some residual structure is always retained. Structural changes in the D- or E-domains of fibrinogen could be independently observed by two different calorimetric signals. The two techniques applied in the present study -- micro-DSC and FTIR spectroscopy -- can be concluded to provide complementary information on adsorption-induced structural changes on both the molecular (thermal stability, overall structure) and the sub-molecular level (secondary structure).     

2D representation of protein secondary structure sequences and its applications

In terms of the classification of the protein secondary structures, we propose a 2D representation of protein secondary structure sequences. The representation are used to display, analyze, and compare the secondary structure sequences. Based on this representation, we assign the structural class to the protein, and verify the advantage or disadvantage of the methods of predicted protein second structure.     

Characterizing protein activities on the lysozyme and nanodiamond complex prepared for bio applications

Recently, nanodiamond particles have attracted increasing attention as a promising nanomaterial for its biocompatibility, easy functionalization and conjugation with biomolecules, and its superb physical/chemical properties. Nanodiamonds are mainly used as markers for cell imaging, using its fluorescence or Raman signals for detection, and as carriers for drug delivery. For the success of these applications, the biomolecule associated with the nanodiamond has to retain its functionality. In this work, the protein activities of egg white lysozyme adsorbed on nanodiamond particles of different sizes is investigated. The lysozyme nanodiamond complex is used here as a protein model for analyzing its structural conformation changes and, correspondingly, its enzymatic activity after the adsorption. Fourier-transform infrared spectroscopy (FTIR) is used for the analysis of the sensitive protein secondary structure. To access the activities of the adsorbed lysozyme, a fluorescence-based assay is used. The process of adsorption is also analyzed using UV-visible spectroscopic measurements in combination with analysis of nanodiamond properties with FTIR, Raman spectroscopy, and ζ-potential measurements. It is found that the activity of lysozyme upon adsorption depends on the nanodiamond's size and surface properties, and that the nanodiamond particles can be selected and treated, which do not alter the lysozyme functional properties. Such nanodiamonds can be considered convenient nanoparticles for various bioapplications.