Preparing metal-complex surfaces based on self-assembled monolayers of thiols and disulfides on gold

The complexation of monolayers of sulfur-containing ligands self-assembled on surface of gold with Co(II) and Cu(II) ions is studied using quartz crystal microbalance (QCM) and wetting measurements. The optimum conditions for obtaining metal-complex surfaces and the compositions of the resulting monolayers are determined.     

Decaborane thiols as building blocks for self-assembled monolayers on metal surfaces

Three nido-decaborane thiol cluster compounds, [1-(HS)-nido-B(10)H(13)] 1, [2-(HS)-nido-B(10)H(13)] 2, and [1,2-(HS)(2)-nido-B(10)H(12)] 3 have been characterized using NMR spectroscopy, single-crystal X-ray diffraction analysis, and quantum-chemical calculations. In the solid state, 1, 2, and 3 feature weak intermolecular hydrogen bonding between the sulfur atom and the relatively positive bridging hydrogen atoms on the open face of an adjacent cluster. Density functional theory (DFT) calculations show that the value of the interaction energy is approximately proportional to the number of hydrogen atoms involved in the interaction and that these values are consistent with a related bridging-hydrogen atom interaction calculated for a B(18)H(22)·C(6)H(6) solvate. Self-assembled monolayers (SAMs) of 1, 2, and 3 on gold and silver surfaces have been prepared and characterized using X-ray photoelectron spectroscopy. The variations in the measured sulfur binding energies, as thiolates on the surface, correlate with the (CC2) calculated atomic charge for the relevant boron vertices and for the associated sulfur substituents for the parent B(10)H(13)(SH) compounds. The calculated charges also correlate with the measured and DFT-calculated thiol (1)H chemical shifts. Wetting-angle measurements indicate that the hydrophilic open face of the cluster is directed upward from the substrate surface, allowing the bridging hydrogen atoms to exhibit a similar reactivity to that of the bulk compound. Thus, [PtMe(2)(PMe(2)Ph)(2)] reacts with the exposed and acidic B-H-B bridging hydrogen atoms of a SAM of 1 on a gold substrate, affording the addition of the metal moiety to the cluster. The XPS-derived stoichiometry is very similar to that for a SAM produced directly from the adsorption of [1-(HS)-7,7-(PMe(2)Ph)(2)-nido-7-PtB(10)H(11)] 4. The use of reactive boron hydride SAMs as templates on which further chemistry may be carried out is unprecedented, and the principle may be extended to other binary boron hydride clusters.     

Polymorphism in biphenyl-based self-assembled monolayers of thiols

Self-assembled monolayers of omega-(4'-methylbiphenyl-4-yl) butanethiol (H3C-C6H4-C6H4-(CH2)n-SH) on Au(111) substrates were investigated with scanning tunneling microscopy and contact angle measurements. A striking polymorphism was observed upon annealing, and structural changes were paralleled by a switch in stability against exchange by other thiols from unstable to stable. The phase formed at temperatures above 413 K was characterized by a very high structural perfection over areas exceeding 105 nm2. The results suggest an additional dimension in the control of structure and properties of thiol monolayers if different factors contributing to the energetics of SAMs enter in a competing rather than a cooperative way.     

Synthesis of model long-chain ω-alkenyltrichlorosilanes and triethoxysilanes for the formation of self-assembled monolayers

The synthesis of model long-chain hydrocarbons (C₁₃ and C₁₉) carrying a vinyl group and a trichloro- or a triethoxysilyl group at each end is reported. These compounds are suitable for linkage to a hydroxylated silicon surface and at the other end with vinyl group for further functionalization and multilayer formation.     

Measurement of the charge number per adsorbed molecule and packing densities of self-assembled long-chain monolayers of thiols

We have applied a recently developed method (Langmuir 2006, 22, 5509-5519) to determine charge numbers per adsorbed molecule and packing densities in self-assembled monolayers (SAMs) of octadecanethiol (C18SH), a representative long-chain thiol. Our method yields values of area per molecule that are physically reasonable, in contrast to the popular reductive desorption method, which gives molecular areas that are smaller than those determined by the van der Waals radii. In a nonadsorbing electrolyte, we were able to model the dependence of the charge number per adsorbed molecule on the electrode potential, taking into account that the desorption process is a substitution reaction between the solvent and the adsorbate. We have also shown that the charge number per adsorbed thiol is affected by the specific adsorption of the anion of the electrolyte. In the latter case, the thiol competes for adsorption sites at the surface not only with water but also with the anion of the electrolyte, and this competition has an effect on the measured charge number.     

Electric field driven protonation/deprotonation of self-assembled monolayers of acid-terminated thiols

Using electrochemical impedance spectroscopy (EIS), we provide an explanation for the pH dependence of the voltammetric peak height for the electric-field-driven protonation and deprotonation of carboxylic acid-terminated thiol self-assembled monolayers (SAMs). The current flowing through the interface can be divided into a purely capacitive current and a protonation/deprotonation current that is directly related to the rate of change of the SAM's protonation (or deprotonation). We demonstrate that at applied potentials close to those corresponding to half-ionization of the SAM and pHs near the pK(1/2), the equivalent circuit describing the interface consists of a Helmholtz film capacity in parallel with a "protonation/deprotonation" impedance which is further shown to be a series combination of a resistor, Rp, and capacitor Cp. Explicit expressions for Rp and Cp are derived in terms of the rate constants for the forward (protonation) and reverse (deprotonation) reactions. Simulated EIS data demonstrate the agreement between our model of the interface and experimental impedance and voltammetric data.     

Competition as a design concept: polymorphism in self-assembled monolayers of biphenyl-based thiols

Self-assembled monolayers (SAMs) of two omega-(4'-methylbiphenyl-4-yl)alkanethiols (CH(3)(C(6)H(4))(2)(CH(2))(n)SH, BPn, n = 4, 6) on Au(111) substrates, prepared from solution at room temperature and subsequently annealed at temperatures up to 493 K under a nitrogen atmosphere, were studied using scanning tunneling microscopy (STM), high-resolution X-ray photoelectron spectroscopy (HRXPS), and near-edge X-ray absorption fine structure spectroscopy (NEXAFS). In striking contrast to BPn SAMs with n = odd, for which only one phase is observed, the even-numbered BPn SAMs exhibit polymorphism. Irreversible phase transitions occur which involve three phases differing substantially in density and stability. Upon annealing, BP4 and BP6 transform into a beta-phase, which is characterized by an exceptionally high structural quality with virtually defect-free domains exceeding 500 nm in diameter. Exchange experiments, monitored by contact angle measurement, reveal that the beta-phase exhibits a dramatically improved stability. The fundamental differences in the phase behavior of even- and odd-numbered BPn SAMs are discussed in terms of two design strategies based on cooperative and competitive effects.     

Thermal characterization of self-assembled monolayers of dialkyl disulfides containing the urea moiety

Thermal behaviors of urea-containing dialkyl disulfides 4-(3-octadecylureido)phenyl disulfide (ODPD) and 3-(octadecylureido)ethane disulfide (ODED) and octadecyl disulfide (ODDS) self-assembled monolayers (SAMs) were investigated by infrared reflection-absorption spectroscopy (IRRAS). Among the SAMs, the alkyl chain of ODPD is thermally reversible in the temperature region between 30 and 138 degrees C, whereas alkyl chains of ODED and ODDS are irreversible. With regard to the thermal stability of alkyl chains, ODED is superior to ODPD and ODDS. It is considered that the good thermal reversibility of the ODPD SAM is due to the rigid phenyl ring and the good thermal stability of the ODED SAM is due to the flexible ethylene linker. Moreover, 2D correlation analysis provides an enhancement of spectral resolution in amide II and CH2 antisymmetric stretching bands and suggests from the comparison of sequences of spectral events of ODPD and ODED SAMs that the last reorientation of the phenyl ring in the ODPD SAM is responsible for the good thermal reversibility.     

Characterization of self-assembled monolayers of thiols on Au(111)

Self-assembled monolayers (SAMs) of n-butanethiol, n-dodecanethiol and their equimolar mixture on Au(111) were prepared and characterized by ellipsometry, contact angle measurement, scanning electron microscopy (SEM), X-ray photoelectron spectroscopy (XPS) and atomic force microscopy (AFM). Results revealed that these SAMs are oriented ultrathin films with the thickness of nanometer scale, and the SAMs were influenced by the molecular chain length, the lattice orientation and cleanliness of the substrates. The surface of the longer chain SAM is hydrophobic. The thicknesses of three SAMs of n-butanethiol, n-dodecanethiol and their mixture revealed by ellipsometry and XPS are about 0.59 - 0.67nm, 1.60- 1.69 nm and 1.23 - 1.32nm, respectively. AFM images further demonstrated that the SAM formed by the mixture has some microdomains with two different thicknesses.     

Nanoscale clustering of carbohydrate thiols in mixed self-assembled monolayers on gold

Self-assembled monolayers (SAMs) bearing pendant carbohydrate functionality are frequently employed to tailor glycan-specific bioactivity onto gold substrates. The resulting glycoSAMs are valuable for interrogating glycan-mediated biological interactions via surface analytical techniques, microarrays, and label-free biosensors. GlycoSAM composition can be readily modified during assembly by using mixed solutions containing thiolated species, including carbohydrates, oligo(ethylene glycol) (OEG), and other inert moieties. This intrinsic tunability of the self-assembled system is frequently used to optimize bioavailability and antibiofouling properties of the resulting SAM. However, until now, our nanoscale understanding of the behavior of these mixed glycoSAMs has lacked detail. In this study, we examined the time-dependent clustering of mixed sugar + OEG glycoSAMs on ultraflat gold substrates. Composition and surface morphologic changes in the monolayers were analyzed by X-ray photoelectron spectroscopy (XPS) and atomic force microscopy (AFM), respectively. We provide evidence that the observed clustering is consistent with a phase separation process in which surface-bound glycans self-associate to form dense glycoclusters within the monolayer. These observations have significant implications for the construction of mixed glycoSAMs for use in biosensing and glycomics applications.     

Solid-phase synthesis of alkanethiols for the preparation of self-assembled monolayers

Self-assembled monolayers (SAMs) of alkanethiols (ATs) on gold can be used to fabricate surfaces for nanoscience and biology. The chemical structure of the interface can be tailored simply by modifying the AT headgroup. To streamline access to different precursor ATs, we developed a general solid-phase synthetic route. A key feature of this route is the use of a modified resin containing an AT linker ("AT resin") because it minimizes purification steps. The precursor to the AT resin was prepared in five steps, and all of the synthetic intermediates are stable solids that can be purified by crystallization. Accordingly, the AT resin can be prepared on a multigram scale. The utility of the AT resin was evaluated by using it to generate a variety of ATs. For example, ATs presenting different types of integrin-binding ligands (linear and cyclic RGD derivatives) were prepared and used to form arrays of SAMs that support cell adhesion. Additionally, the AT resin also provides a starting point for the synthesis of ATs presenting reactive groups (e.g., an amine-reactive AT or a maleimide-containing alkanedisulfide) or protein immobilization tags (e.g., biotin-AT). Thus, our synthetic strategy provides a convenient and flexible means for the synthesis of the necessary building blocks for custom SAMs and SAM arrays.     

Formation of double helix self-assembled monolayers of ethynylhelicene oligomer disulfides on gold surfaces

Optically active ethynylhelicene pentamers and hexamers linked by disulfide bonds were synthesized. They formed self-assembled monolayers (SAMs) with double helix structure on gold surfaces, which were analyzed by infrared reflection-absorption spectroscopy (IR-RAS), quartz crystal microbalance (QCM), surface plasmon resonance (SPR), and circular dichroism (CD). Double helix SAMs could be formed on gold surfaces either from double helices or random coils in solution. The double helices on the surface were more stable than in solution. This result suggested the presence of strong intercomplex interactions between double helix complexes on the surface.     

An efficient and convenient method for preparation of disulfides from thiols using air as oxidant catalyzed by Co-Salophen

Disulfides have been synthesized by oxidation of thiols using air as oxidant catalyzed by Co-Salophen with high yields,mild and neutral conditions,and easy procedures of the catalyst.The products were confirmed by ~1H NMR and IR.     

Synthesis, electrochemistry and self-assembled monolayers of novel tetrathiafulvalene (TTF) and pi-extended TTF (exTTF) disulfides

The synthesis of a new series of tetrathiafulvalene (TTF) and pi-extended TTF (exTTF) disulfides and the electrochemical properties of self-assembled monolayers derived from these compounds are described. When the intermediate bromides 3 and 7 were reacted with thiourea, followed by basic hydrolysis, the expected thiol formation was not observed and only disulfides were obtained. A mechanism is proposed to explain the self-oxidation process of these compounds. For the first time SAMs of exTTF derivatives were prepared. Electrochemical data for SAMs of 6 and 8 reveal a single two-electron chemically reversible oxidation process to form a dicationic state, typical of the exTTF system. The SAMs are stable over extended periods of time and show electrochemical stability upon repeated potential scans.     

m-Terphenyl thiols: rigid and bulky molecules for the formation of bioactive self-assembled monolayers on gold

The m-terphenyl 4-mercaptomethyl-2,6-diphenylbenzoic acid (3), was prepared and shown to form omega-carboxyl terminated self-assembled monolayers (SAMs) on gold with high surface pKa(10.1 +/- 0.2) and low density favourable for the binding of biological macromolecules.     

Stress in self-assembled monolayers: omega-biphenyl alkane thiols on Au(111)

Self-assembled monolayers of omega-(4'-methylbiphenyl-4-yl) alkane thiols CH3(C6H4)2(CH2)(n)SH (BPn, n = 2, 3, and 5) on Au(111) substrates, prepared at room and elevated temperatures, were studied using scanning tunneling microscopy. In contrast to the biphenyl thiol analogues with n = 0 or 1, ordered domains of large size are formed which exhibit small, periodic height variations on a length scale of several nanometers. These are attributed to solitons (or domain walls), resulting from structural mismatch between the molecular adlayer and the gold substrate. The implications of these results for the design of aromatic thiols to cope with stress and yield low-defect density self-assembled monolayers are discussed.     

An efficient and convenient method for the preparation of disulfides from thiols using oxygen as oxidant catalyzed by tert-butyl nitrite

An efficient and convenient tert-butyl nitrite-catalyzed selective aerobic oxidation of thiols has been developed. Under the optimal reaction conditions, a number of thiol derivatives including aromatic thiols, heteroaromatic thiols and aliphatic thiols can be converted into their corresponding disulfides in good to excellent yields.     

Photochemical desulfurization of thiols and disulfides

A visible light-induced desulfurization process for thiols and disulfides using triethylphosphite and triethylborane is reported. The reaction can be effected on a range of organic molecules having either primary, secondary or tertiary thiol groups and disulfides without the need of protecting groups. Thus, after treating l-cystine 7, l-cystine dimethylester 8, thioctic amide 9 and glutathione disulfide 10, first with tributylphosphine, later with triethylborane/triethylphosphite under irradiation in a one-pot reaction, the corresponding desulfurized compounds l-Ala, l-Ala, 1-octanamide and γ-l-Glu-l-Ala-Gly, respectively, are prepared in high yields with retention of configuration.     

Electrochemically deposited palladium as a substrate for self-assembled monolayers

The vast majority of reports of self-assembled monolayers (SAMs) on metals focus on the use of gold. However, other metals, such as palladium, platinum, and silver offer advantages over gold as a substrate. In this work, palladium is electrochemically deposited from PdCl2 solutions on glassy carbon electrodes to form a substrate for alkanethiol SAMs. The conditions for deposition are optimized with respect to the electrolyte, pH, and electrochemical parameters. The palladium surfaces have been characterized by scanning electron microscopy (SEM) and the surface roughness has been estimated by chronocoulometry. SAMs of alkane thiols have been formed on the palladium surfaces, and their ability to suppress a Faradaic process is used as an indication for palladium coverage on the glassy carbon. The morphology of the Pd deposit as characterized by SEM and the blocking behavior of the SAM formed on deposited Pd delivers a consistent picture of the Pd surface. It has been clearly demonstrated that, via selection of experimental conditions for the electrochemical deposition, the morphology of the palladium surface and its ability to support SAMs can be controlled. The work will be applied to create a mixed monolayer of metals, which can subsequently be used to create a mixed SAM of a biocomponent and an alkanethiol for biosensing applications.     

Mixed alkanethiol self-assembled monolayers as substrates for microarraying applications

In current microarraying experiments, data quality is in large part determined by the quality of the spots that compose the microarray. Since many microarrays are made with contact printing techniques, microarray spot quality is fundamentally linked to the surface characteristics of the microarray substrate. In this work, surface coatings, consisting of self-assembled monolayers (SAMs) of mixed alkanethiol molecules, were used to control the surface properties of the microarray substrate. X-ray photoelectron spectroscopy and equilibrium contact angle measurements were performed in order to confirm the chemical content and wettability of these surface coatings. To test their performance in microarraying applications, sample microarrays were printed on these mixed alkanethiol films and then characterized with a noncontact visual metrology system and a fluorescence scanner. This work demonstrates that utilizing mixed alkanethiol SAMs as a surface coating provides spatially homogeneous surface characteristics that are reproducible across multiple microarray substrates as well as within a substrate. In addition, this paper demonstrates that these films are stable and robust as they can maintain their surface characteristics over time. Overall, it is demonstrated that SAMs of mixed alkanethiols serve as a useful surface coating, which enhances spot and therefore data quality in microarraying applications.