Charge transport and electronic properties of N-heteroquinones: quadruple weak hydrogen bonds and strong π–π stacking interactions

The charge transport and photophysical properties of N-heteroquinones, which can function as n-type organic semiconductors in organic field-effect transistors (OFETs) with high electron mobility, were systematically investigated using hopping model, band theory, and time-dependent density functional theory (TDDFT). The calculated absorption spectra and electron mobility are in good agreement with experimental results. To the studied compounds, subtle structural modifications can greatly reduce the reorganization energy. There are two main kinds of intermolecular interaction forces of the studied compounds in the crystal, which result from intermolecular π–π and hydrogen bonds interactions, respectively. The results of hopping model show that the electron transport properties are mainly determined by pathways containing intermolecular π–π interactions, and hole transport properties are mainly determined by pathways containing intermolecular hydrogen bonds from the standpoint of transfer integral. Moreover, electronic transfer integral value increases with the enhancement of intermolecular overlap corresponding to the overlap extent of π–π packing. Hole transfer integral value decreases with decreasing the number of hydrogen bonds. This means that charge transport properties can be efficiently tuned by controlling the relative positions of the molecules and the number of hydrogen bonds. The analysis of band structure also supports the conclusion of hopping model.     

Electronic structure, geometry, and reactivity of arylsilenes: a quantum-chemical study

The geometry and electronic structure of 1,4-di(silaethen-1-yl)benzene (2), itsmeta- andbrtho-isomers (3 and4, respectively), and its carbon analog, 1,4-divinylbenzene (5), were studied by the semiempirical MNDO-PM3 method. Unlike5, two pairs of the frontier MOs in isomers2–4 are mainly π-orbitals of Si=C bonds, while the structure of the lowest occupied π-MO indicates delocalization of π-electrons of the entire system. The main characteristic features of the double Si=C bonds (the high polarity and narrow HOMO-LUMO energy gap, which favors the [2+2]-cycloaddition reaction) remain in arylsilenes2–4. The interaction between π-electrons of benzene fragment and the double Si=C bonds results in violation of the benzene ring symmetry, which is most pronounced in structure5. Weakening of the C−H bonds in theortho-positions of the aromatic nucleus in the compounds under study is observed. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 256–260, February, 1999.     

Azabicyclo[3.3.1]nonanone: a case when weak interactions are preferred over strong hydrogen bonds

Derivatives of azabicyclo[3.3.1]nonanone tend to prefer for weak interactions in the crystal over strong N–H···O hydrogen bonds. The main stabilizing forces in the investigated azatricyclo[7.3.1.0^2,7]trideca-trienone derivatives are C–H···O, N–H···π and C–H···π interactions, leading to interesting structural patterns. The azabicyclo[3.3.1]nonanone ring adopts chair-envelope conformation having exo-C2,C4-aromatic substituents. Amino NH is in trigonal pyramidal configuration. The interesting stereochemistry of azabicyclo[3.3.1]nonanone, driving exceptional preference for weaker interactions over strong hydrogen bonds serves a useful example toward engineering and design strategy, and structure prediction methodologies.     

Experimental and computational studies on zwitterionic (E)-2-(1-(2-(4-methylphenylsulfonamido)ethyliminio)ethyl) phenolate

The Schiff base compound (E)-2-(1-(2-(4-methylphenylsulfonamido)ethyliminio)ethyl) phenolate has been synthesised and characterized by IR, UV–Vis, and X-ray single-crystal determination. Ab initio calculations have been carried out for the title compound using the density functional theory (DFT) and Hartree–Fock (HF) methods at 6-31G(d) basis set. The calculated results show that the DFT/B3LYP and HF can well reproduce the structure of the title compound. Using the TD-DFT and TD-HF methods, electronic absorption spectra of the title compound have been predicted and a good agreement with the TD-DFT method and the experimental ones is determined. Molecular orbital coefficient analyses reveal that the electronic transitions are mainly assigned to n → π* and π → π* electronic transitions. To investigate the tautomeric stability, optimization calculations at B3LYP/6-31G(d) level were performed for the NH and OH forms of the title compound. Calculated results reveal that the OH form is more stable than NH form. In addition, molecular electrostatic potential and NBO analysis of the title compound were performed at B3LYP/6-31G(d) level of theory.     

Redox induced reactions of transition metal π- and σ,π-complexes

In this review, redox-induced reactions of π- and σ,π-complexes leading to the selective formation (or cleavage) of C–H, C–C, and C–O bonds have been summarized. To illustrate the synthetic potential of such methodology, the following representative reactions studied in our group are discussed: (1) oxidatively induced hydrogen elimination from “open” cyclic diene and dienyl complexes resulting in formation of “closed” dienyl and arene complexes, respectively; (2) reductive activation of C–H bonds in diene, vinylidene, and carbyne complexes forming new multiple C–C bonds; (3) oxidative dehydrodimerization of vinylidene complexes into binuclear μ-divinylidene species; and (4) oxidatively induced addition of oxygen nucleophiles to μ-divinylidene complexes affording cyclic μ-dicarbene derivatives. Oleg V. Gusev, deceased on October 31.     

IR spectrum and normal mode analysis of the antiAlzheimer’s disease natural product Huperzine A: A quantum chemistry density-functional theory (DFT) investigation

Quantum chemistry density-functional theory (DFT)B3LYP method with 6-31G basis set has been empolyed to study the electronic structure and IR spectrum of Huperzine A. The calculation result showed that the characteristic of the predicted IR bands was in general consistent with the experimental spectrum. 45 vibration modes were assigned clearly from the total of 102 vibration bands. The strongest IR-intensive band corresponds to the stretching vibration of the C=O bond of the pyridone ring, and the highest frequency band belongs to the pyridone N-H stretch. The investigation showed that the obvious differences between the calculated bands and the experimental spectrum existed at the bands involving the hydrogen atoms of amino and pyridone amide groups, which could form intermolecular hydrogen bond with other Huperzine A in the crystal structure. The hydrogen bonds can not only affect the orientation of these hydrogen atoms, but also can affect the force property of the chemical bond, which can change the vibrational frequencies. Project supported by the “863” High Technology Program of China (No. 863-103-04-01) and the National Natural Science Foundation of China (Grant No. 29403027).     

The Lewis basicity of nitrido complexes. Theoretical investigation of the structure and bonding of Cl2 (PH3)3ReN–X (X = BH3, BCl3, BBr3, AlH3, AlCl3, AlBr3, GaH3, GaCl3, GaBr3, O, S, Se, Te)

Quantum chemical calculations using gradient-corrected density functional theory (B3LYP) and ab initio methods at the MP2 level are reported for the geometries and bond energies of the nitrido complexes Cl₂ (PH₃)₃ReN–X (X = BH₃, BCl₃, BBr₃, AlH₃, AlCl₃, AlBr₃, GaH₃, GaCl₃, GaBr₃, O, S, Se, Te). The theoretical geometries are in excellent agreement with experimental values of related complexes which have larger phosphine ligands. The parent nitrido complex Cl₂(PH₃)₃ReN is a very strong Lewis base. The calculated bond dissociation energy of Cl₂(PH₃)₃ReN–AlCl₃ is D _e = 43.7 kcal/mol, which is nearly as high as the bond energy of Me₃N–AlCl₃. The donor-acceptor bonds of the other Cl₂(PH₃)₃ReN–AY₃ complexes are also very strong. Even stronger N–X bonds are predicted for most of the nitrido-chalcogen complexes, which exhibit the trend X = O ≫ S > Se > Te. Analysis of the electronic structure shows that the parent compound Cl₂(PH₃)₃ReN has a Re–N triple bond. The Re–N σ bond is clearly polarized towards nitrogen, while the two π bonds are nearly nonpolar. The Re–N σ and π bonds become more polarized toward nitrogen when a Lewis acid or a chalcogen atom is attached. Bonding in AY₃ complexes should be described as Cl₂(PH₃)₃ReE≡N→AY₃, while the chalcogen complexes should be written with double bonds Cl₂(PH₃)₃Re=N=X. The charge-decomposition analysis indicates that the nitrogen-chalcogen bonds of the heavier chalcogen complexes with X = S, Se, Te can also be interpreted as donor-acceptor bonds between the nitrido complex acting as a Lewis base and the chalcogen atom with an empty p(σ) orbital acting as a Lewis acid. The nitrido oxo complex Cl₂(PH₃)₃ Re=N=O has a covalent N–O double bond. Received: 27 July 1998 / Accepted: 26 October 1998 / Published online: 16 March 1999     

Structure of associates of vinyl molecules and maleic anhydride in CCl<Subscript>4</Subscript> solution

The self-association of styrene, acrylonitrile, methylmethacrylate, N-vinylpyrrolidone, and maleic anhydride molecules is considered in dependence on the nature of the monomer, i.e., on the conjugation between functional groups. The AM1, Hartree-Fock (RHF), and density functional theory (DFT) methods of calculation are used in our investigations. Charge distributions on the atoms of interacting groups and contributions from overlapping molecular orbitals to the energy of formation of self-associates are found. The calculated parameters are compared with experimental data on absorption band shifts in IR spectra and on chemical shifts Δ_H and Δ_C for the hydrogen and carbon atoms of =CH, =CH₂, C=O groups of bound molecules in ¹H and ¹³C NMR spectra. The formation of π-H, CH…O, and CH…N bonds is proved. Analysis of CCl₄/monomer dependences shows that dimers are present in dilute solutions, while the presence of trimers in concentrated solutions cannot be excluded. Self-association constants are determined along with the degree of self-association, which lies within the range of 40–60% for 50 mol% of a monomer in solution.     

Structure and hydrogen bonding in polyhydrated complexes of guanine

Abstract Molecular structure of complexes of guanine with 12, 13, 16, and 17 water molecules were calculated using B3LYP/6-311G(d,p) level of theory. Interaction with water results in some deformation of geometrical parameters of guanine, which can be described as contribution of zwitter-ionic resonant form into the structure of DNA base. Saturation of water binding sites within guanine creates possibilities for the formation of the N···H–O hydrogen bond where the nitrogen atom of amino group acts as proton acceptor. The NBO analysis of guanine–water interactions reveals that hydrogen bonds involving the N(3) and N(7) atoms of guanine represent a case of mixed N···H–O/π···H–O hydrogen bonds where contribution of π-system into total energy of interaction varies from 3% to 41%. This contribution significantly depends on orientation of the hydrogen atom of water molecule with respect to plane of purine bicycle and influence of neighboring water molecules. Graphical Abstract      

The synthesis,crystal structure and thermal studies of a mixed-ligand 1,10-phenanthroline and hexamethylenetetramine complex of lanthanum nitrate. Insight into coordination sphere geometry changes of lanthanide(III) 1,10-phenanthroline complexes

The structure of tetraaqua-bis(nitrato-O,O′)-(1,10-phenanthroline-N,N′)-lanthanum(III) 1,3,5,7-tetraazatricyclo[3.3.1.1^3,7]decane nitrate dihydrate, [La(NO₃)₂ · phen · (H₂O)₄]⁺ · hmt · NO ₃ ⁻ · 2H₂O, is presented. The lanthanum ion exhibits tenfold coordination and the polyhedron can be described as tetradecahedron. The complex cations, nitrate ions, water and hexamethylenetetramine molecules are assembled via hydrogen bonds, H–π rings and π–π stacking interactions into 3D supramolecular network. The bond strength of coordination sphere was calculated by means of the bond-valence method. The influence of La:phen stoichiometry and additional ligand on the changes of lanthanum(III) coordination sphere geometry in ten-coordinated complexes with 1,10-phenanthroline was discussed. The infrared spectrum of structure optimised by means of quantum mechanical calculations was analysed and compared with measured one. The obtained compound was characterised by thermogravimetric analysis in conjunction with evolved gases in the air atmosphere.     

Electronic structure and hydrogen bond in the crystal of paracetamol drugs

We study the density of state (DOS), band structure (BS), and atomic orbit projected density of state (PDOS) of paracetamol crystal adopting the density functional theory (DFT) technique in the local density approximation (LDA). The band structure around the Fermi level and the contributions from p-type orbit of C, N, O, and s-type orbit of H to the total density of state (TDOS) are addressed, and we find that the electronic characteristic is the key to form the hydrogen bond between O and H atoms. We show that the structure of paracetamol crystal consists of the –OH···O=C and –NH···OH hydrogen-bonding cycle by studying a single paracetamol molecule as well as the PDOS graph of O and H atoms in the crystal.     

Calculation of the vibronic spectra of adenine

The vibrational structure of the absorption spectra of the first two π-π* singlet transitions of adenine is calculated in the Franck-Condon approximation including Herzberg-Teller interactions. The effect of excitation-induced changes in molecular angles on the intensities of the vibrational components is estimated. Structural models of the adenine molecule in the excited states are constructed. The theoretical and absorption spectra of the first π-π* transition are compared. The results of the electronic structure calculations of adenine by different CNDO/S methods are discussed. Translated fromZhumal Struktumoi Khimii, Vol. 38, No. 2, pp. 334–344, March–April, 1997.     

Exploration of conformations and quantum chemical investigation of l-tyrosine dimers, anions, cations and zwitterions: a DFT study

Conformational analysis of tyrosine (YN) and its ionized counter parts cations (YC), anions (YA) and biologically relevant zwitterionic form (YZ) has been carried out. An exhaustive and systematic exploration of l-tyrosine dimer (YD) conformations resulted in about 59 distinct minima on the potential energy surface. The hydrogen bonds and a variety of non-covalent interactions such as OH–π, NH–π, CH–π, CH–O and π–π interactions stabilized the different forms of tyrosine and its dimers. Atoms in molecules analysis was performed to evaluate the nature and strength of the non-covalent interactions. Over all the NH–O, hydrogen bonds have showed higher stability than other non-covalent interactions in this study. The most stable dimers predominantly possess hydrogen bonding interactions, while the ones with aromatic side chain interactions are less stable. A delicate balance of non-covalent interactions governed the stability of different forms of tyrosine and its dimers.     

DFT and TD-DFT studies on symmetrical squaraine dyes for nanocrystalline solar cells

Abstract  

The ground-state geometries, electronic structures, and electronic absorption spectra of symmetrical squaraine dyes SQ1–SQ4 were investigated using density functional theory and time-dependent DFT at the B3LYP level. The calculated geometries indicate that strong conjugation effects occur in the dyes. The highest occupied molecular orbital energy levels were calculated to be −4.95, −5.22, −5.09, and −5.06 eV, and the lowest unoccupied molecular orbital energies were −2.72, −3.05, −2.80, and −2.80 eV for SQ1–SQ4, respectively. Taking the conduction band energy of TiO₂ into account, these data reveal the sensitized mechanism: the interfacial electron transfer between the semiconductor TiO₂ electrode and the dye sensitizers SQ1–SQ4 are electron-injection processes from excited dyes to the semiconductor conduction band. The intense calculated absorption bands are assigned to π → π* transitions, which exhibit appreciable blue-shift compared with the experimental absorption maxima due to the inherent approximations in the TD-DFT.     

Moisture uptake in native cellulose – the roles of different hydrogen bonds: a dynamic FT-IR study using Deuterium exchange

This paper aims at a better understanding of the interaction between cellulose and moisture. In particular, the role of different hydrogen bonds in moisture uptake is investigated. Dynamic Fourier transform infrared spectroscopy (FT-IR) has been used in combination with deuterium exchange, which permits the labelling of cellulose domains with different accessibilities. The static spectra indicate a marked exchange of deuterium for the O2–H⋯O6 bonds, but only a limited exchange for the O3–H⋯O5 bonds. In the dynamic FT-IR spectra, deuteration gives rise to the growth of a broad band at wavenumbers around 2500 cm⁻¹. The rather unstructured appearance of the band suggests that deuteration is occurring only on the surface of the cellulose crystallites, i.e. in more or less non-load-carrying parts. This is corroborated by the lack of split peaks related to OD bonds in this band. In agreement with these observations, the split peak related to O3–H⋯O5 bonds and assigned to the load carrying cellulose structure increases during both H₂O and D₂O moisture conditioning, indicating a shift of the load transfer towards the backbone of the cellulose structure.     

Electronic structure and chemical bonding of δ-Bi2O3

The band structure of the fluorite-type δ-Bi₂O₃ was calculated by the linear LMTO methods in the approximation of overlapping atomic spheres using the basis set of orthogonal orbitals (LMTO-ASA) and by the full-potential LMTO method (LMTO-FP) for two vacancy orientations over a wide range of oxygen concentrations. The calculated parameters of chemical bonds—the binding energy E_bin and the pressure of the electron-nuclear system—show that the most stable compound is that with two vacancies per unit cell, oriented predominantly along the (111) direction. The hybrid Bi−O bonds are weak, and mostly the Bi−Bi bonds are responsible for the structural stabilization of δ-Bi₂O₃. The mechanism of the formation of a semiconductor gap in the band structure of δ-Bi₂O₃ is discussed. Institute of Solid State Chemistry, Ural Branch, Russian Academy of Sciences. Translated fromZhurnal Strukturnoi Khimii, Vol. 37, No. 1, pp. 48–58, January–February, 1996. Translated by I. Izvekova     

Aromaticity in heterocycles: new HOMA index parametrization

Abstract  

A new parametrization for the Harmonic Oscillator Model of Aromaticity (HOMA) index to determine aromaticity of heterocycles is introduced. The new HOMA for Heterocycle Electron Delocalization (HOMHED) is based on the experimental data from electron diffraction X-ray for the reference molecules used to estimate the simple, double, and optimal bond lengths. Bond length of “pure” single and double bonds of non-conjugated systems or systems without π-electrons and/or n-electron delocalization were considered. The HOMHED index was determined for a series of five and six heterocycles with C–C, C–N, C–O, C–S, N–N, N–O, and N–S bonds. The π-electron delocalization of these heterocycles was determined by Krygowski-reformulated HOMA and HOMHED and it was proved that HOMHED worked in line with HOMA for all heterocycles, except those containing oxygen, which were found to be weak aromatic from Krygowski rHOMA calculations.     

Theoretical study of phenol adsorption on the (8, 0) silicon carbide nanotube

Phenol adsorptions on solid surfaces have attracted considerable attention due to their potential applications. Through density functional theory (DFT) methods, we study phenol adsorption on a semiconducting (8, 0) silicon carbide nanotube (SiCNT). We find that the hydroxyl group of phenol prefers to attach to the Si atom of SiCNT. The calculated adsorption energy is −0.494 eV, and 0.208 electrons are transferred from the adsorbate to the nanotube. Interestingly, the O–H bond of the adsorbed phenol can be split on the SiCNT, in which the H atom of the O–H group in the phenol is transferred from the Si atom to its neighboring C atom. Furthermore, we also explore the π–π interaction between the aromatic ring of the phenol and the hexagons of the SiCNT. The calculated adsorption energy is about −0.285 eV with a neglectable charge transfer (0.064 e). On the basis of the calculated band structures, we find that the electronic properties of the adsorbed SiCNT by the phenol are little changed. The present results might be helpful not only to provide an effective way to convert or remove phenol but also to widen the application fields of the SiCNT.     

On the relationships between molecular conformations and intermolecular contacts toward crystal self-assembly of mono-, di-, tri-, and tetra-oxygenated xanthone derivatives

Oxygenated xanthones have been extensively investigated over the years, but there are few reports concerning their crystal structure. Our chemical investigations of Brazilian plants resulted in the isolation of four natural products named 1-hydroxyxanthone (I), 1-hydroxy-7-methoxyxanthone (II), 1,5-dihydroxy-3-methoxyxanthone (III), and 1,7-dihydroxy-3,8-dimethoxyxanthone (IV). The structures of these compounds were established on the basis of single crystal X-ray diffraction. The xanthone nucleus conformation is essentially planar with the substituents adopting the orientations less sterically hindered. In addition, classical intermolecular hydrogen bonds (O–H···O) present in III and IV give rise to infinite ribbons. However, the xanthone I does not present any intermolecular hydrogen bonds, meanwhile the xanthone II presents only a non-classical one (C–H···O). The crystal packing of all xanthone structures is also stabilized by π–π interactions. The fingerprint plots, derived from the Hirshfeld surfaces, exhibited significant features of each crystal structures.     

Hydrothermal syntheses and characterization of cobalt(II) and nickel(II) complexes of 1,3-adamantanedicarboxylic acid and 1,10-phenanthroline

Two coordination complexes, namely [Co(phen)(H₂O)L]·H₂O and [Ni₂(phen)₂(H₂O)₂L₂]·4H₂O (phen = 1,10-phenanthroline, H₂L = 1,3-adamantanedicarboxylic acid) have been hydrothermally synthesized and structurally characterized by single crystal X-ray diffraction. [Co(phen)(H₂O)L]·H₂O consists of 1D chains of the complex plus lattice H₂O molecules. Interchain hydrogen bonds and π–π stacking interactions assemble the 1D chains into 2D layers. [Ni₂(phen)₂(H₂O)₂L₂]·4H₂O is a binuclear complex which is assembled into a 3D supramolecular structure by strong hydrogen bonds and π–π stacking interactions. Both complexes were characterized by physico-chemical and spectroscopic methods.