Theoretical study on the protonation of cucurbit[6]uril

Abstract  

The most probable structures of the cucurbit[6]uril·H₃O⁺ and cucurbit[6]uril·(H₃O⁺)₂ cationic complex species have been derived by quantum mechanical DFT calculations. In these two complexes, each of the H₃O⁺ ions is bound by three strong linear hydrogen bonds to three carbonyl oxygen atoms of the parent macrocycle.     

Experimental evidence, stability, and the most probable structure of protonated p-tert-butylcalix[4]arenetetrakis(N,N-dimethylacetamide)

Abstract  

From extraction experiments and γ-activity measurements, the extraction constant corresponding to the equilibrium H₃O⁺(aq) + 1·Na⁺(nb) \leftrightarrows \leftrightarrows 1·H₃O⁺ (nb) + Na⁺ (aq) taking place in the two-phase water–nitrobenzene system (1 = p-tert-butylcalix[4]arenetetrakis(N,N-dimethylacetamide); aq = aqueous phase, nb = nitrobenzene phase) was evaluated as log K _ex (H₃O⁺, 1·Na⁺) = −0.1 ± 0.1. Further, the stability constant of the 1·H₃O⁺ complex in water-saturated nitrobenzene was calculated for a temperature of 25 °C as log β _nb (1·H₃O⁺) = 10.9 ± 0.2. By using quantum mechanical DFT calculations, the most probable structure of the 1·H₃O⁺ cationic complex species was derived. In this complex, the hydroxonium ion H₃O⁺ is bound partly to one phenoxy oxygen atom and partly to two carbonyl oxygens of 1 by strong hydrogen bonds and obviously by other electrostatic interactions.     

Structure of Dibenzocrown Ethers and their H-bonded Adducts. 3. Isolation of Oxonium Ions by Biphenyl-20-crown-6 and [1.5]Dibenzo-18-Crown-6 in Complexes with [NbF6]− and [TaF6]−

The reaction of Nb₂O₅ and Ta₂O₅ with an aqueous solution of hydrofluoric acid, HF in the presence of biphenyl-20-crown-6 (BP20C6, L¹) or [1.5]dibenzo-18-crown-6 ([1.5]DB18C6, L²) results in the complexes [L¹·(H₃O)][NbF₆] (1), [L¹ (H₃O)][TaF₆] (2), [2L²·(H₇O₃)][NbF₆] (3) and [2L²·(H₇O₃)][TaF₆] (4). Complexes 1–4 were identified by the elemental and X-ray structural analysis and IR spectroscopy. Complexes 1 and 2 are isostructural, with the H₃O⁺ oxonium ion embedded in one crown molecule via OH···O hydrogen bonds. Complexes 3 and 4 represent the supramolecular isomers distinctive by the crown conformations and crystal packing, with the (H₇O₃)⁺ cation enclosed in the cage of two crown molecules. Being poor H-bond acceptors, NbF₆⁻ and TaF₆⁻ anions do not compete with the crown oxygen atoms for the oxonium hydrogen atoms, but are involved in the numerous C–H···F short contacts responsible for the extended supramolecular architectures in all cases. A change of crown ethers’ conformation in complexes 1–4 and a correlation between the degree of proton hydration and an accessibility of the crown ether oxygen atoms is observed. Electronic Supplementary Material Supplementary material is available for this article at and is accessible for authorized users.     

Theoretical study on the complexation of bambus[6]uril with the chloride, bromide, and iodide anions

Abstract  

By using quantum mechanical DFT calculations, the most probable structures of the bambus[6]uril·Cl⁻, bambus[6]uril·Br⁻, and bambus[6]uril·I⁻ anionic complex species were derived. In these three complexes, each of the considered univalent halide anions, included in the center of the macrocyclic cavity, is bound by 12 weak C–H⋯X⁻ (X⁻ = Cl⁻, Br⁻, I⁻) hydrogen bonds between methine hydrogen atoms on the convex face of the glycoluril units and the respective anion. The lengths of the C–H⋯X⁻ hydrogen bonds increase in the order Cl⁻ < Br⁻ < I⁻.     

Potassium salts of hypodiphosphoric acid

The synthesis and crystal structures of a series of six crystalline potassium salts of hypodiphosphoric acid, H₄P₂O₆, are reported, namely potassium hydrogen phosphonophosphonate, K⁺·H₃P₂O₆⁻, (I), dipotassium dihydrogen hypodiphosphate monohydrate, 2K⁺·H₂P₂O₆²⁻·H₂O, (II), dipotassium dihydrogen hypodiphosphate dihydrate, 2K⁺·H₂P₂O₆²⁻·2H₂O, (III), pentapotassium hydrogen hypodiphosphate dihydrogen hypodiphosphate dihydrate, 5K⁺·HP₂O₆³⁻·H₂P₂O₆²⁻·2H₂O, (IV), tripotassium hydrogen hypodiphosphate tetrahydrate, 3K⁺·HP₂O₆³⁻·4H₂O, (V), and tetrapotassium hypodiphosphate tetrahydrate, 4K⁺·P₂O₆⁴⁻·4H₂O, (VI). All the hypodiphosphate anions, viz. H₃P₂O₆⁻, H₂P₂O₆²⁻, HP₂O₆³⁻ and P₂O₆⁴⁻, adopt a staggered conformation. The P—P bond lengths [2.1722 (7)–2.1892 (10) Å] do not depend on the basicity of the anion. The compounds are organized into different types of one‐, two‐ or three‐dimensional polymeric hydrogen‐bonded networks, or simply exist in the form of isolated or dimeric units. The coordination numbers of the K⁺ cations range from 6 to 9, and the cationic sublattices are polymeric one‐, two‐ or three‐dimensional networks, or isolated [KO₆] or dimeric [K₂O₁₂] polyhedra.     

Syntheses and X-Ray Crystal Structures of Novel Oxonium Ion-12-Crown-4 Complexes Isolated From Liquid Clathrate Media

Abstract

The reactions of Mo(CO)₆ and W(CO)₆ with HCl_(g) in the presence of 12-crown-4 and H₂O have been investigated in toluene. For both reactions, two products were isolated, depending on the oxidation of the metal center. For molybdenum, the Mo^III species, [H₃O⁺ · 12-crown-4]₃[Mo₂Cl₉ ^3-], 1, was obtained from the liquid clathrate layer in the reaction mixture. Upon air oxidation of the reaction mixture, the Mo^v complex, [H₇O₃ ^? · H₄O₂ ⁺ · (12-crown-4)₂][MoOCl₄(H₂O)^?]₂, 2, rapidly formed. For tungsten, the W^II species, [(H₅O₂ ⁺)₂ · 12-crown-4][W(CO)₄Cl^? ₃]₂, 3, deposited from the liquid clathrate layer which upon oxidation formed the W^v complex, [H₃O⁺· 12-crown-4][WOCl₄(H₂O)^?], 4. These reactions were promoted by UV radiation and formed liquid clathrates almost immediately upon reaction. X-ray crystal structures were performed on each compound. Complexes 1 and 4 have H₃O⁺ oxonium ions involved in complex hydrogen bonded arrays with the 12-crown-4 acceptor molecules. The H₅O₂ ⁺ oxonium ions in 2 and 3 contain extremely short O…O separations, equivalent to the shortest O-H…O bonds known. Also isolated in complex 2 was the H₇O₃ ⁺ oxonium ion which contains an unusual linear O…O…O core.     

Three organic–inorganic hybrid complexes based on the Wells–Dawson polyoxoanion

Three new organic–inorganic hybrid complexes based on the Wells–Dawson polyoxoanion, namely (H₂bpp)[Ni₂(bpp)₂(H₂O)₄(P₂W₁₈O₆₂)]·H₂O 1, [Cu₆(Hbpy)₆(bpy)₃(P₂W₁₈O₆₂)₂]·2H₂O 2 and (Him)₅[Cu(im)₂(P₂W₁₈O₆₂)]·4H₂O 3 [bpp = 1,3-bis (4-pyridyl) propane, bpy = 4,4′-bipyridine, im = imidazole] have been synthesized and characterized. Complex 1 exhibits a three-dimensional (6, 3)-connected framework with anatase topology constructed from [α-P₂W₁₈O₆₂]⁶⁻ clusters and [Ni(bpp)]²⁺ fragments. Each [α-P₂W₁₈O₆₂]⁶⁻ anion links to six nickel atoms through six terminal oxygen atoms from four polar and two equatorial WO₆ octahedra, which shows a novel coordination mode of a Wells–Dawson cluster with a transition-metal atom. Complex 2 displays an interesting one-dimensional double-chain structure built from [α-P₂W₁₈O₆₂]⁶⁻ clusters and [Cu₂(bpy)(Hbpy)₂]²⁺ fragments. To our knowledge, complex 2 represents the first double-chain organic–inorganic hybrid complex based on a Wells–Dawson-type cluster. Complex 3 possesses a one-dimensional zigzag chain structure constructed from [α-P₂W₁₈O₆₂]⁶⁻ anions and [Cu(im)₂]⁺ units through weak Cu···O interactions.     

N–H···O=P hydrogen-bonded dimers as the main structural motif of aminophosphonate diesters

Abstract  

Crystal and molecular structures of three aminophosphonate diesters, diethyl and dibutyl [α-(quinolin-3-ylamino)-N-benzyl]phosphonates (1 and 2) and dibutyl [α-anilino-(quinolin-3-yl)methyl]phosphonate (3) were reported and comparatively discussed. Characteristic structural features for these compounds are strong N–H···O=P hydrogen bonds that connect two organophosphorus molecules in cyclic centrosymmetric dimer. Phosphoryl oxygen forms additional interaction with a C–H donor from the nearby aromatic group. Dimer formation in solution was also confirmed using electrospray ionization mass spectrometry. Mass spectra of six structurally similar aminophosphonate derivatives, 1–3 along with diethyl [α-anilino-(quinolin-3-yl)methyl]phosphonate (4), diethyl and dibutyl [α-anilino-(quinolin-2-yl)methyl]phosphonates (5 and 6) were studied and dimolecular ions [2M + Na]⁺ and [2M + H]⁺ were observed.     

Supramolecular inclusion of a pillared double-layered host by an anion-directed second-sphere coordination

In this paper, we have illustrated the utilisation of a second-sphere coordination approach to construct supramolecular inclusion solids with varieties of guest molecules. A flexible molecule N,N,N′,N′-tetra-p-methylbenzyl-ethylenediamine (L1) bearing doubly protonated H-bond donors was designed, capable of forming N–H…Cl hydrogen bonds with a crystallographically unique chloride anion, to construct an anion-directed ligand. The pillared double-layered host framework was constructed by an anion-directed ligand and primary coordination sphere [CoCl₄]^2 ?  through weak C–H…Cl hydrogen-bonding interactions. A variety of guest molecules, such as p-anisaldehyde, 1,4-dimethoxy-2,5-bis(methoxymethyl)benzene, can be included, leading to the formation of novel supramolecular inclusion solids: [L1]·4[H]⁺·[CoCl₄]^2 ? ·2Cl^? ·1.5[C₈H₈O₂]·0.25[CH₃OH] (1) and [L1]·4[H]⁺·[CoCl₄]^2 ? ·2Cl^? ·1.5[C₁₂H₂₀O₄]·0.5[CH₃OH] (2).

We have presented herein the utilisation of a second-sphere coordination approach to construct supramolecular inclusion solids with a variety of guest molecules. A novel type of a pillared double-layered host framework was constructed by a second-sphere coordination between the anion-directed ligand (L1 = N,N,N′,N′-tetra-p-methylbenzyl-ethylenediamine) and [CoCl₄]^2 ?  through weak C–H…Cl hydrogen-bonding interaction, and a variety of guest molecules, such as p-anisaldehyde, 1,4-dimethoxy-2,5-bis(methoxymethyl)benzene, can be included, leading to the formation of supramolecular inclusion solids: [L1]·4[H]⁺·[CoCl₄]^2 ? ·2Cl^? ·1.5[C₈H₈O₂]·0.25[CH₃OH] (1) and [L1]·4[H]⁺·[CoCl₄]^2 ? ·2Cl^? ·1.5[C₁₂H₂₀O₄]·0.5[CH₃OH] (2)

     

Photodissociation of protonated β-diketones in the gas phase

The gas phase photodissociation spectra of four protonated β-diketones were obtained and compared with the absorption spectra of the corresponding ions in solution. Protonated 2,4-pentanedione was observed to undergo the photodissociation process [C₅H₉O₂]⁺ +hν → [CH₃CO]⁺ +C₃H₆O with a λmax at 276±10 nm compared with a solution absorption maximum at 286 nm. Protonated 2,4-hexanedione was observed to undergo the photodissociation processes [C₆H₁₁O₂]⁺ +hν → [CH₃CO]⁺ +C₄H₈O and [C₆H₁₁O₂]⁺ +hν → [C₂H₅CO]⁺ +C₃H₆O with a λmax at 279±10 nm compared with a solution absorption maximum at 288 nm. Protonated 3-methyl-2,4-pentanedione was observed to undergo the photodissociation process [C₆H₁₁O₂]⁺ +hν → [CH₃CO]⁺ +C₄H₈O with a λmax at 295±10 nm compared with a solution absorption maximum at 305 nm. Protonated 1,1,1-trifluoro-2,4-pentanedione was observed to undergo the photodissociation process [C₅H₆F₃O₂]⁺ +hν → CF₃H+[C₄H₅O₂]⁺ with a λmax at 273±10 nm compared with a solution absorption maximum at 288 nm. The [CH₃CO]⁺ and [C₂H₅CO]⁺ produced photochemically with the first three ions react to regenerate the protonated β-diketone leading to a photostationary state. Photodissociation of the protonated alkyl β-diketones is believed to occur from the protonated keto form, whereas photodissociation of protonated 1,1,1-trifluoro-2,4-pentanedione is believed to occur from the protonated enol form. Mechanisms for the observed photodissociation processes are proposed and comparisons with results from related techniques are presented.     

Stability constants of the Li+, Na+, H3O+, NH4+, Ag+, and K+ complexes of the cone conformer of tetraethyl p-tert-butyltetrathiacalix[4]arene tetraacetate in nitrobenzene saturated with water

Abstract  

From extraction experiments in the two-phase water–nitrobenzene system and γ-activity measurements, the stability constants of the tetraethyl p-tert-butyltetrathiacalix[4]arene tetraacetate (cone)·M⁺ complexes (M⁺ = Li⁺, H₃O⁺, NH₄ ⁺, Ag⁺, or K⁺) were determined in water-saturated nitrobenzene. It was found that these constants increase in the cation order NH₄ ⁺ < K⁺ < H₃O⁺ < Ag⁺ < Li⁺ < Na⁺.     

Cooperative N–H···N,N–H···O,and O–H···N bonded molecular dimers of two new 3,5-diaryl-1<Emphasis Type="Italic">H</Emphasis>-pyrazoles

Two new 3,5-diaryl-1H-pyrazoles: 3(5)-(4-tert-butylphenyl)-5(3)-(naphthalene-2-yl)-1H-pyrazole (1) and 5-(4-(benzyloxy)phenyl)-3-(furan-2-yl)-1H-pyrazole (2) were synthesized and characterized. Two strong ions peaks [2M]⁺ and [2M + Na]⁺ observed in the ESI–MS spectra are attributed to the dimerization process in solution formed by intermolecular N–H···N hydrogen bonds. The crystal structures have been determined by X-ray crystal structure analysis. Compound 1 exists as a pair of tautomers 1a and 1b, and its dimer [R ₂²(6) motif] is formed by the tautomers 1a and 1b. Compound 2 only exists as a 2a tautomer, and interesting intermolecular N–H···O and O–H···N hydrogen bonds link two pyrazoles and two methanol molecules, leading to the formation of an R ₄⁴(10) dimer motif.     

Structures of decomposing and non-decomposing gas-phase [C4H6O]+· radical cations,and their [C2H2O]+· and [C3H6]+· product ions

The structures of gas-phase [C₄H₆O]^+· radical cations and their daughter ions of composition [C₂H₂O]^+· and [C₃H₆]^+· were investigated by using collisionally activated dissociation, metastable ion measurement, kinetic energy release and collisional ionization tandem mass spectrometric techniques. Electron ionization (70 eV) of ethoxyacetylene, methyl vinyl ketone, crotonaldehyde and 1-methoxyallene yields stable [C₄H₆O]^+· ions, whereas the cyclic C₄H₆O compounds undergo ring opening to stable distonic ions. The structures of [C₂H₃O]^+· ions produced by 70-eV ionization of several C₄H₆O compounds are identical with that of the ketene radical cation. The [C₃H₆]^+· ions generated from crotonaldehyde, methacrylaldehyde, and cyclopropanecarboxaldehyde have structures similar to that of the propene radical cations, whereas those ions generated from the remainder of the [C₄H₆O]^+· ions studied here produced a mixed population of cyclopropane and propene radical cations.     

Hydrothermal Synthesis and Crystal Structure of a New 2-D Organic–Inorganic Hybrid Wells–Dawson-Type Polyoxometalate

Abstract  

A new 2-D organic–inorganic hybrid Wells–Dawson-Type polyoxotungstate K[Cu(Im)₂]₆P₂W₁₈O₆₂·2H₂O·(OH) (Im = Imidazole) (1) has been synthesized under hydrothermal conditions and characterized by IR spectroscopy, TG, and single crystal X-ray structural analysis. Crystal data for 1: triclinic, P-1, a = 15.3676(12) ?, b = 15.5059(14) ?, c = 24.6437(19) ?, α = 98.088(2)°, β = 96.930(2)°, γ = 119.312(2)°, Z = 2. Single crystal X-ray structural analysis reveals that the [P₂W₁₈O₆₂]⁶⁻ polyoxoanion is linked by [Cu(Im)₂]⁺ cation to form a 1-D chain along the a axis which is connected by K⁺ cation down the c axis to form a 2-D layer.     

On the protonation of dibenzo-18-crown-6

Abstract  

The stability constant of the dibenzo-18-crown-6·H₃O⁺ cationic complex species dissolved in nitrobenzene saturated with water has been determined from extraction experiments in the two-phase water–nitrobenzene system and from γ-activity measurements. Various structures of protonated dibenzo-18-crown-6 are discussed.     

Two Chain Like B-Type-Anderson-Based Hybrids Synthesized in Choline Chloride/Urea Eutectic Mixture

Two new chain like B-Anderson type polyoxomolybdates based hybrids {Na[(CH₃)₃N(CH₂)₂OH]₂}[Al(OH)₆Mo₆O₁₈]·2(NH₂CONH₂)·6H₂O (1) and {Na[(CH₃)₃N(CH₂)₂OH]₂}[Cr(OH)₆Mo₆O₁₈]·2(NH₂CONH₂)·6H₂O (2) were synthesized in choline chloride/urea eutectic mixture and characterized by element analysis, IR, UV–vis, TG, single-crystal X-ray analysis, and power X-ray diffraction. Through the linkage [Na(H₂O)₂(NH₂CONH₂)₂]⁺, the [X(OH)₆Mo₆O₁₈]³⁻ (X = Al, Cr) units are arranged into a chain. Considering hydrogen bonding interactions between the chains, compound 1 and 2 are all well-arranged into 3-D supermolecular assembly. The structure is first obtained in the choline chloride/urea eutectic mixture.     

Polyoxidovanadate complexes: synthesis,structures and catalytic oxidative bromination of phenol red

By selecting appropriate ligands, two polyoxidovanadate complexes, [Ni(en)₂]₃[V₁₈O₄₂Cl]·7H₂O·2H₃O⁺ (1) and [H₂N(CH₃)₂]₃[PV₁₄O₄₂]·2TMP·6H₃O⁺ (2), have been synthesized at different pH values using V₂(SO₄)₃, Ni(CH₃COO)₂, and H₆TTHA (for 1), VO(acac)₂ and TPP (for 2) (en = C₂H₈N₂, TPP = thiamine pyrophosphate, TMP = thiamine monophosphate, H₆TTHA = 1,3,5-triazine-2,4,6-triamine hexaacetic acid). The complexes have been characterized by elemental analysis, IR spectroscopy, thermogravimetric analysis (TG), and single crystal X-ray diffraction. The complexes catalyze the oxidation of the organic substrate phenol red in the presence of H₂O₂ and bromide, and the reaction system is considered as a model for hydrogen peroxide determination. The reaction rate constants (k) for 1 and 2 are calculated as 3.729 × 10³ and 4.083 × 10³ (mol L)^?2 s^?1. The maximum conversion rate of phenol red for 1 is 83.32%, while for 2 is 81.12%.     

A New 1D Chain-like Complex Built Up of Cu-containing Sandwich Tungstogermanate

Two new tungstogermanates K₂Na₁₀[Cu₄(GeW₉O₃₄)₂] · 15.5H₂O (1) and K₄Na₆[Cu_3.5W_0.5(H₂O)₂(GeW₉O₃₄)₂] · 17H₂O (2) have been obtained by the conventional aqueous solution methods and characterized by IR, element analysis, electrochemistry and single-crystal X-ray analysis. Compound 1 is composed of the [Cu₄(GeW₉O₃₄)₂]¹²⁻ anions linked by two equivalent bonds of Cu–O–W, representing the first one-dimensional chain-like structure based on sandwich-type polyoxometalates by direct condensation to form oxo-bridged arrays of clusters. Compound 2 is a sandwich structure, consisting of two trivacant [GeW₉O₃₄]¹⁰⁻ units linked by a [Cu_3.5W_0.5(H₂O)₂] cluster, and the anions are linked by the K⁺ and Na⁺ to form a three-dimensional structure. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Thermal behaviour of new Cu(II) complexes with Schiff bases functionalised with 1,3,5-triazine moieties as potential antibacterial agents

New complexes of type [Cu(L¹)₂(OH₂)]·4H₂O (1), [Cu(L²)(OH₂)]·0.5H₂O (2) and [Cu₃(L³)₂(OH₂)₃]·0.5H₂O (3) were synthesized by [1 + 1], [1 + 2] and [1 + 3], respectively, template condensation of 2,4,6-triamino-1,3,5-triazine and salicylic aldehyde in the presence of copper(II). The features of complexes have been established from microanalytical, IR and UV–Vis data. The thermal analyses have evidenced the thermal intervals of stability and also the accompanying thermodynamic effects. Processes as water elimination and oxidative degradation of the organic ligands were observed. After water elimination, complexes revealed a similar thermal behaviour. The final product of decomposition was copper(II) oxide as powder X-ray diffraction indicated.     

The Protonation of Acetamide and Thioacetamide in Super­acidic Solutions: Crystal Structures of [H3CC(OH)NH2]+AsF6– and [H3CC(SH)NH2]+AsF6–

Acetamide and thioacetamide react with the superacid solutions HF/MF₅ (M = As, Sb) under formation of the corresponding salts [H₃CC(OH)NH₂]⁺MF₆^– and [H₃CC(SH)NH₂]⁺MF₆^– (M = As, Sb), respectively. The reaction of DF/AsF₅ with acetamide and thioacetamide lead to the corresponding deuterated salts [H₃CC(OD)ND₂]⁺AsF₆^– and [H₃CC(SD)ND₂]⁺AsF₆^–, respectively_. The salts are characterized by vibrational and NMR spectroscopy, and in the case of [H₃CC(OH)NH₂]⁺AsF₆^– and [H₃CC(SH)NH₂]⁺AsF₆^– also by single‐crystal X‐ray analyses. The [H₃CC(OH)NH₂]⁺AsF₆^– ( 1 ) salt crystallizes in the triclinic space group P$\bar{1}$ with two formula units per unit cell, and the [H₃CC(SH)NH₂]⁺AsF₆^– ( 2 ) salt crystallizes in the monoclinic space group P2₁/c with four formula units per unit cell. In both crystal structures three‐dimensional networks are observed which are formed by intra‐ and intermolecular N–H ··· F and O–H ··· F or S–H ··· F hydrogen bonds, respectively. For the vibrational analyses, quantum chemically calculated spectra of the cations [H₃CC(OH)NH₂ · 3HF]⁺ and [H₃CC(SH)NH₂ · 2HF]⁺ are considered.