FTIR, Raman spectra and ab initio calculations of 2-mercaptobenzothiazole

FTIR and Raman spectra of a rubber vulcanization accelerator, 2-mercaptobenzothiazole (MBT), were recorded in the solid phase. The harmonic vibrational wavenumbers, for both the toutomeric forms of MBT, as well as for its dimeric complex, have been calculated, using ab initio RHF and density functional B3LYP methods invoking different basis sets upto RHF/6-31G** and B3LYP/6-31G** and the results were compared with the experimental values. Conformational studies have been also carried out regarding its toutomeric monomer forms and its dimer form. With all the basis sets the thione form of MBT (II) is predicted to be more stable than thiol form (I) and dimeric conformation (III) is predicted to be more stable with monomeric conformations (I) and (II). Vibrational assignments have been made, and it has been found that the calculated normal mode frequencies of dimeric conformation (III) are required for the analysis of IR and Raman bands of the MBT. The predicted shift in NH- stretching vibration towards the lower wave number side with the B3LYP/6-31G** calculations for the most stable dimer form (III), is in better agreement with experimental results. The intermolecular sulfur-nitrogen distance in N-H...S hydrogen bond was found to be 3.35 angstroms from these calculations, is also in agreement to the experimental value.     

Conformational studies of n-propylamine by combined ab initio MO calculations and Raman spectroscopy

The results of ab initio SCF-MO calculations performed with a 3-21G(N*) basis set, for fully optimized geometries of five conformations of n-propylamine, are presented. The calculated relative order of total energies for these conformers is TT≈GG′>TG>GT>GG. At 300 K, the Boltzmann distribution of populations is 18, 37, 20, 19 and 7%, respectively.Raman spectra of n-propylamine and n-propylamine-N-d₂ in the liquid phase exhibit a number of bands whose temperature-dependent intensities clearly suggest the occurrence of different conformers in simultaneous equilibria. Deuteration of the amine group originates pairs of Raman bands at 428 and 440 cm⁻¹ and at 863 and 885 cm⁻¹. The bands at 428 and 885 cm⁻¹ are favoured by reduction of temperature. Normal coordinate calculations permit the assignment of the Raman and i.r. spectra in good agreement with experimental evidence. Among the five possible conformers of n-propylamine, it is possible to detect the presence of at least three conformations in the liquid phase, corresponding to the skeletal trans (TT and GT) and at least one of the skeletal gauche (TG, GG or GG′) forms. In the solid phase, only the bands ascribed to the TT form were observed.The ab initio results for the isolated molecule show that the all-trans conformation, TT, and the conformation GG′ have the smallest energies. On the other hand, the vibrational results for the liquid and solid phases indicate that the all-trans conformation, TT, is the more populated form. In addition, this conformer presents the highest calculated dipole moment, in good agreement with the liquid phase Raman spectroscopic results which point out that this conformation is favoured by polar solvents. Intermolecular interactions operating in the liquid n-propylamine, possibly of the hydrogen bonding type, are responsible for altering the relative order of conformational stability as predicted by the ab initio SCF-MO results for the isolated molecule.     

Infrared and Raman spectra, conformational stability, ab initio calculations of structure, and vibrational assignment of 2-hexyne

The infrared spectra (3500–50 cm⁻¹) of the gas and solid and the Raman spectra (3500–50 cm⁻¹) of the liquid and solid have been recorded for 2-hexyne, CH₃–CC–CH₂CH₂CH₃. Variable temperature studies of the infrared spectrum (3500–400 cm⁻¹) of 2-hexyne dissolved in liquid krypton have also been recorded. Utilizing four anti/gauche conformer pairs, the anti(trans) conformer is found to be the lower energy form with an enthalpy difference of 74±8 cm⁻¹ (0.88±0.10 kJ/mol) determined from krypton solutions over the temperature range −105 to −150 °C. At room temperature it is estimated that there is 42% of the anti conformer present. Equilibrium geometries and energies of the two conformers have been determined by ab initio (HF and MP2) and hybrid DFT (B3LYP) methods using a number of basis sets. Only the HF and DFT methods predict the anti conformer as the more stable form as found experimentally. A vibrational assignment is proposed based on the force constants, relative intensities, depolarization ratios from the ab initio and DFT calculations and on rotational band contours obtained using the calculated equilibrium geometries. From calculated energies it is shown that the CH₃ group exhibits almost completely free rotation which is in agreement with the observation of sub-band structure for the degenerate methyl vibrations from which values of the Coriolis coupling constants, ζ, have been determined. The results are compared to similar properties of some corresponding molecules.     

Syntheses, crystal structure and ab initio calculations of two new phosphoric triamides

The reaction of N-benzoylphosphoramidic dichloride with piperidine and 4-methylpiperidine lead to PhC(O)N(H)P(O)R₂ with R=piperidine (1) and R=4-methylpiperidine (2) as N-benzoyl-N′,N″-bis(piperidine) phosphoric triamide and N-benzoyl-N′,N″-bis(4-methylpiperidine) phosphoric triamide, respectively. The products have been characterized by ¹H, ¹³C, ³¹P NMR spectra, and by elemental analysis. The crystalline solid for (1) and (2) consists surprisingly of four and two independent molecules, respectively. There is a disorder in one amine group due to ring inversion in each conformer in compound 1. In the solid state, comparable magnitudes for the stabilization of the stable conformers for the more or less discrete molecules, the polarization effects, hydrogen bonding and the packing effects could be anticipated.

The geometry of compound (1) optimized by density functional calculations at the B3LYP/6-31++G* (d,p) level, is in good agreement with data obtained from X-ray crystallography.     

3,5-Difluorobenzonitrile: ab initio calculations,FTIR and Raman spectra

Geometry, vibrational wavenumbers and several thermodynamic parameters were calculated using ab initio quantum chemical methods for the 3,5-difluorobenzonitrile molecule. The results were compared with the experimental values. With the help of three specific scaling procedures, the observed vibrational wavenumbers in FTIR and Raman spectra were analysed and assigned to different normal modes of the molecule. Most of the modes have wavenumbers in the expected range and the error obtained was in general very low. Using PEDs the contributions were determined for the different modes to each wavenumber. From the PED, it is apparent that the frequency corresponding to C[triple bond]N stretching contains 87% contribution from the C[triple bond]N stretching force constant and it mixes with the C-CN stretching mode 13 to the extent of 12%. Other general conclusions were also deduced.     

Infrared and Raman spectra, ab initio calculations of structure and vibrational assignment of 1-fluoro-2-butyne.

The infrared spectra (3500-50 cm(-1)) of the gas and solid and the Raman spectra (3500-50 cm(-1)) of the liquid and solid have been recorded for 1-fluoro-2-butyne, CH3-C-triple bond-C-CH2F. Equilibrium geometries and energies have been determined by ab initio and hybrid DFT methods using a number of basis sets. A vibrational assignment is proposed based on the force constants, relative intensities, depolarization ratios from the ab initio and DFT calculations and on vibrational-rotational band contours obtained using the calculated equilibrium geometries. From calculated energies it is shown that the CH3 group exhibits almost completely free rotation which is in agreement with the observation of Coriolis sub-band structure in two of the degenerate methyl vibrations. The results are compared to the corresponding quantities for some similar molecules.     

Fourier transform-infrared and Raman spectra, ab initio calculations and assignments for 6-methyl-4-bromomethylcoumarin

Fourier transform-infrared (4000-400 cm-1) and Raman (3500-50 cm-1) spectral measurements have been made for 6-methyl-4-bromomethylcoumarin. Equilibrium structures, harmonic vibrational frequencies, infrared intensities, and depolarization ratios have been computed at RHF/6-31G* and B3LYP/6-31G* levels of theory. Twisting CH2Br moiety in the geometry optimization leads to the most stable conformer lacking symmetry (C1). This is reflected in the richness of bands in the experimental spectra. A complete assignments of the bands, aided by the ab initio calculations, has been proposed for the 6-methyl-4-bromomethylcoumarin. Due to lack of symmetry, several normal vibrations have been found to be mixed ones.     

Probing the structure and bonding in Al6N- and Al6N by photoelectron spectroscopy and ab initio calculations

The electronic and geometrical structure of a nitrogen-doped Al6- cluster (Al6N-) is investigated using photoelectron spectroscopy and ab initio calculations. Photoelectron spectra of Al6N- have been obtained at three photon energies with seven resolved spectral features. The electron affinity of Al6N has been determined to be 2.58 +/- 0.04 eV. Global minimum structure searches for A6N- and its corresponding neutral form are performed using several theoretical methods. Vertical electron detachment energies, calculated using three different methods for the lowest energy structure and a low-lying isomer, are compared with the experimental data. The ground-state structure of Al6N- is established from the joint experimental and theoretical study to consist of an Al2 dimer bonded to the top of a quasi-planar tetracoordinated N unit, Al4N-, or it can be viewed as a distorted trigonal prism structure with the N atom bonded in one of the prism faces. For neutral Al6N, three low-lying isomers are found to compete for the global minimum, two of which are built from the tetracoordinated Al4N unit. The chemical bonding in Al6N- is discussed on the basis of molecular orbital and natural bond analyses.     

Flexible H2O2 in water: electronic structure from photoelectron spectroscopy and ab initio calculations

The effect of hydration on the electronic structure of H(2)O(2) is investigated by liquid-jet photoelectron spectroscopy measurements and ab initio calculations. Experimental valence electron binding energies of the H(2)O(2) orbitals in water are, on average, 1.9 eV red-shifted with respect to the gas-phase molecule. A smaller width of the first peak was observed in the photoelectron spectrum from the solution. Our experiment is complemented by simulated photoelectron spectra, calculated at the ab initio level of theory (with EOM-IP-CCSD and DFT methods), and using path-integral sampling of the ground-state density. The observed shift in ionization energy upon solvation is attributed to a combination of nonspecific electrostatic effects (long-range polarization) and of the specific interactions between H(2)O(2) and H(2)O molecules in the first solvation shell. Changes in peak widths are found to result from merging of the two lowest ionized states of H(2)O(2) in water due to conformational changes upon solvation. Hydration effects on H(2)O(2) are stronger than on the H(2)O molecule. In addition to valence spectra, we report oxygen 1s core-level photoelectron spectra from H(2)O(2)(aq), and observed energies and spectral intensities are discussed qualitatively.     

l-Cysteine: Neutron spectroscopy, Raman, IR and ab initio study

Inelastic incoherent neutron scattering (IINS) spectra were obtained at 10K for normal and deuterated l-cysteine. Raman and infrared spectra were also recorded. Geometry of l-cysteine molecule was optimized for the zwitterion form using ab initio HF/6-31G* level. The theoretical frequencies of normal and d(4)-l-cysteine were compared with INS, Raman and IR spectra. Normal coordinate analysis and band assignments based on ab initio calculations and experimental data are presented.     

Molecular structure and rotational isomerism in glyoxylicacid from microwave spectroscopy and ab initio calculations

An improved substitution structure for glyoxylic acid in the hydrogen bonded trans-1 form is presented. By means of microwave double resonance spectroscopy, the trans-2 form, with a zig-zag chain of atoms HOCCH, was identified. Using trans-2 dipole moment components calculated by ab initio SCF theory, the energy of the trans-2 form is found to be 1.2 ± 0.5 kcal mole^?1 higher than that of the trans-1 form. The ab initio energy difference (?1.0 kcal mole^?1) has the wrong sign.     

Synthesis, high-resolution millimeter-wave spectroscopy, and ab initio calculations of ethylmercury hydride

The millimeter-wave rotational spectrum of an organomercury compound, ethylmercury hydride, has been recorded and assigned for the first time. The spectroscopic study is complemented by quantum chemical calculations taking into account relativistic effects on the mercury atom. The very good agreement between theoretical and experimental molecular parameters validates the chosen ab initio method, in particular its capability to predict accurate quartic centrifugal distortion constants related to this type of compound. Estimations of the nuclear quadrupole coupling constants have less predictive power than those of the structural parameters, but are good enough to satisfy the spectroscopic needs. In addition, the orientation of the axis of the H-Hg-C bonds deduced from the experimental nuclear quadrupole coupling constants compares well with the corresponding ab initio value. From the good agreement between experimental and theoretical results, together with the observation of the six most abundant isotopes of mercury, ethylmercury hydride is unambiguously identified as the product of the chemical reaction described here, and its calculated equilibrium geometry is confirmed.     

Infrared and Raman spectra, conformational stability, ab initio calculations and vibrational assignment of 2-fluorobutane

The infrared spectra (3500-50 cm-1) of gas and solid and the Raman spectrum (3500-50 cm-1) of liquid 2-fluorobutane, CH3CHFCH2CH3, have been recorded. Variable temperature studies over the range -105 to -150 degrees C of the infrared spectra (3500-400 cm-1) of the sample dissolved in liquid krypton have also been recorded. By utilizing the relative intensities of six conformer pairs each for both Me-trans/F-trans and Me-trans/H-trans, the Me-trans conformer is found to be the lowest energy form with an enthalpy difference to the F-trans conformer of 102 +/- 10 cm-1 ( 1.21+/- 0.12 kJmol-1) whereas the H-trans conformer is the highest energy form with an enthalpy difference of 208 +/- 21 cm-1 ( 2.49 +/- 0.25 kJmol-1) higher than the Me-trans form. At ambient temperature, it is estimated that there is 50 +/- 2% of the Me-trans form, 31 +/- 1% of the F-trans form, and 19 +/- 1% of the H-trans conformer present. Equilibrium geometries and total energies of the three conformers have been determined by ab initio calculations with full electron correlation by the perturbation method to second order using a number of basis sets. A complete vibrational assignment is proposed for the Me-trans conformer and many of the fundamentals have been identified for the other two forms based on the force constants, relative infrared and Raman intensities, and depolarization ratios obtained from MP2/6-31Gd ab initio calculations. The spectroscopic and theoretical results are compared to the corresponding properties for some similar molecules.     

Identification of synthetic precursors of amphetamine-like drugs using Raman spectroscopy and ab initio calculations: beta-Methyl-beta-nitrostyrene derivatives

The present work reports a vibrational spectroscopic study of several beta-methyl-beta-nitrostyrene derivatives, which are important intermediates in the synthesis of illicit amphetamine-like drugs, such as 3,4-methylenedioxymethamphetamine (MDMA), 3,4-methylenedioxyamphetamine (MDA), p-methoxyamphetamine (PMA) and 4-methylthioamphetamine (4-MTA). A complete conformational analysis of 3,4-methylenedioxy-beta-methyl-beta-nitrostyrene (3,4-MD-MeNS), 4-methoxy-beta-methyl-beta-nitrostyrene (4-MeO-MeNS), 4-methylthio-beta-methyl-beta-nitrostyrene (4-MeS-MeNS), was carried out by Raman spectroscopy coupled to ab initio MO calculations--both complete geometry optimisation and harmonic frequency calculation. The Raman spectra show characteristic features of these precursors, which allow their ready differentiation and identification. It was verified that the conformational behaviour of these systems is mainly determined by the stabilising effect of pi-electron delocalisation.     

Lithium cluster anions: photoelectron spectroscopy and ab initio calculations

Structural and energetic properties of small, deceptively simple anionic clusters of lithium, Li(n)(-), n = 3-7, were determined using a combination of anion photoelectron spectroscopy and ab initio calculations. The most stable isomers of each of these anions, the ones most likely to contribute to the photoelectron spectra, were found using the gradient embedded genetic algorithm program. Subsequently, state-of-the-art ab initio techniques, including time-dependent density functional theory, coupled cluster, and multireference configurational interactions methods, were employed to interpret the experimental spectra.     

MP2, DFT and ab initio calculations on thioxanthone

Density functional theory (DFT), HF and MP2 calculations have been carried out to investigate thioxanthone molecule using the standard 6-31+G(d,p) basis set. The results of MP2 calculations show a butterfly structure for thioxanthone. The calculated results show that the predicted geometry can well reproduce the structural parameters. The predicted vibrational frequencies were assigned and compared with experimental IR spectra. A good harmony between theory and experiment is found. The theoretical electronic absorption spectra have been calculated using CIS method. ¹³C and ¹H NMR of the title compound have been calculated by means of B3LYP density functional method with 6-31+G(d,p) basis set. The comparison of the experimental and the theoretical results indicate that density functional B3LYP method is able to provide satisfactory results for predicting NMR properties.     

Fourier-transform infrared and Raman spectra,and ab initio calculations for cadmium-n-di-iso-propylphosphorylguanidine-di-chloride (CdDPGCl2) complex

Cadmium-n-di-isopropylphosphorylguanidine-di-chloride (CdDPGCl2) was synthesized in the solid phase and characterized previously. The Fourier transform infrared and Raman spectra of (CdDPGCl2) in the solid state were recorded and analyzed. Emphasis was placed on the vibrational assignment of the [(O2P=O-[CdCl2]-HN=C) fragment of the complete molecular structure. With the aim of assisting the vibrational assignment of the experimental spectra, a comparison with the spectra of N-di-isopropylphosphorylguanidine ligand was carried out and ab initio calculations have been performed with several effective core potentials and valence basis sets (Hay-Wadt (HW) and Stevens-Basch-Krauss (SBK)). Due to our limited computational resources, hydrogen atoms replaced the isopropyl groups. The calculated geometrical parameters showed excellent agreement with the experimental, as well as the RHF/MP2 calculated infrared wave numbers, when compared to the IR/Raman experimental wave numbers.     

Raman and infrared spectra, conformational stability, ab initio calculations and vibrational assignments for 2-chloroethyl silane

The infrared (3500–30 cm⁻¹) spectra of gaseous and solid and the Raman (3500–10 cm⁻¹) spectra of liquid with quantitative depolarization ratios and solid 2-chloroethyl silane, ClCH₂CH₂SiH₃, have been recorded. Similar data have been recorded for the Si–d₃ isotopomer. These data indicate that two conformers, trans and gauche, are present in the fluid states but only one conformer, trans, is present in the solid. The mid-infrared spectra of the sample dissolved in liquified xenon as a function of temperature (−55 to −100°C) has been recorded. The enthalpy difference between the conformers has been determined to be 181±12 cm⁻¹ (2.17±0.14 kJ/mol) with the trans rotamer the more stable form. From the isolated Si–H frequencies from the Si–d₂ isotopomer the r_o Si–H distances of 1.484 and 1.483 Å for the trans and 1.481 for the gauche conformers have been obtained. Ab initio calculations have been carried out with several different basis sets up to MP2/6-311+G** from which structural parameters and conformational stabilities have been determined. With all the basis sets the trans form is predicted to be the more stable conformer which is consistent with the experimental results. These results are compared to the corresponding quantities for the carbon analogue.     

Pulsed-field ionization electron spectroscopy and ab initio calculations of copper-diazine complexes

Copper complexes of pyrazine (1,4-C4H4N2), pyrimidine (1,3-C4H4N2), and pyridazine (1,2-C4H4N2) are produced in laser-vaporization supersonic molecular beams and studied by pulsed-field ionization zero electron kinetic energy (ZEKE) spectroscopy and second-order Moller-Plesset perturbation theory. Both sigma and pi complexes are considered by these ab initio calculations; only sigma structures are identified in these experiments. Adiabatic ionization energies and metal-ligand vibrational frequencies of the sigma complexes are measured from the ZEKE spectra. Metal-ligand bond dissociation energies of these complexes are obtained from a thermochemical cycle. The ionization energies follow the trend of Cu pyridazine (43,054 cm(-1)) < Cu pyrimidine (45,332 cm(-1)) < Cu pyrazine (46,038 cm(-1)); the bond energies are in the order of Cu pyridazine (56.2 kJ mol(-1)) > Cu pyrazine (48.5 kJ mol(-1)) approximately Cu pyrimidine (46.4 kJ mol(-1)). The stronger binding of pyridazine is due to its larger electric dipole moment and possibly bidentate binding.