A quantum chemical study of the molecular structure of zinc(II) and boron(II) complexes with monoiodo and dibromo substituted dipyrrines

The geometric parameters of the molecular structures of 4-monoiododipyrrine, 4,4′- and 5,5′-dibromodipyrrine complexes with zinc(II) and boron(III) of the composition [ZnL₂] and [BF₂L] respectively are determined at the M06 and B3LYP levels of density functional theory with the Def2-SVP basis set. The lengths of Zn–N, B–N, and B–F coordination bonds, N–X–N, F–B–F, C–C–C bond angles, the dihedral angles between the planes of pyrrole rings in the dipyrrine ligand, dipyrrine planes in [ZnL₂], dipyrrine core and the plane passing through the atoms of the BF₂ group are optimized. The effect of structural factors on the geometric parameters and the widths of the HOMO–LUMO energy gap in halogen substituted dipyrrinates is analyzed.     

Effect of the formation of silver nano‐binuclear complex on the refinement of cytotoxic and antibacterial potency of coumarin Schiff base: Spectroscopy,thermal, X‐ray diffraction analyses and density functional theory calculations

A new Schiff base (SCH) was prepared using 8‐acetyl‐7‐hydroxy‐4‐methylcoumarin and sulfaclozine. Its silver complex was also synthesized. These compounds were subjected to elemental and spectral analyses. The silver complex was also subjected to thermogravimetric analysis, molar conductance measurements, scanning electron microscopy, energy‐dispersive X‐ray analysis and X‐ray diffraction measurements. The formula of the complex was determined as [(Ag₂SCH(NO₃)₂]. The molar conductance indicates its non‐electrolyte character. The electronic structure and nonlinear optical parameters of SCH and its complex were investigated theoretically at the B3LYP/GENECP level. The geometry of the studied complex is non‐planar as indicated from the dihedral angles between central Ag metal ion and coordinated centres of SCH. Density functional theory calculations were also carried out to calculate the global properties of hardness, global softness and electronegativity. The calculated energy gap between HOMO and LUMO energies shows that charge transfer occurs within the studied complex. The total static dipole moment, the mean polarizability, the anisotropy of the polarizability and the mean first‐order hyperpolarizability were calculated and compared with those of urea as a reference material. The results of the mean first‐order hyperpolarizability showed that SCH and its silver complex are excellent candidates as nonlinear optical materials. The compounds were screened for their antimicrobial effect against various species of bacteria and fungi. Their anticancer activities were evaluated in vitro against the human cancer cell line MCF‐7 (human breast adenocarcinoma).     

DFT Theoretical Calculation of the Site Selectivity of Dihydroxylated (5, 0) Zigzag Carbon Nanotube

Functionalization is an important method to change electrical and thermodynamic properties of carbon nanotubes. In this study, the effect of functionalization of a single-walled carbon nanotube (SWCNT) was investigated with the aid of density functional theory. For this case, a (5, 0) zigzag SWCNT model containing 60 C atoms with 10 hydrogen atoms added to the dangling bonds of the perimeter carbons was used. To model hydroxyl CNT two terminal H atoms were replaced by two –OH groups. All the functionalized CNTs are thermodynamically more stable and have higher dipole moment with respect to the pristine CNT. Depending on the positions of hydroxyl groups on CNT five isomers of C₆₀H₈(OH)₂ were obtained. The structure of these five isomers and molecular properties such as the HOMO–LUMO gaps, the dipole moments, and the density of state were calculated. Our results indicate that the HOMO–LUMO gap strongly depends on the placement of the hydroxyl groups on the nanotubes. The isomers were hydroxyl groups locate on the anti-position show the highest distortions in the structure of the CNT.

     

Superalkali Cations with Trivalent Anion MF<Subscript>6</Subscript><Superscript>3−</Superscript> (M = Al,Ga, Sc) as Central Core

A new series of polynuclear cations MF₆Li₄⁺ (M?=?Al, Ga, Sc) have been theoretically investigated based on density functional theory calculations. The regular octahedral MF₆ groups, although maintained their integrity, distorted to some degree upon the introduction of Li ligands. It has been found that the Li ligands prefer to occupy the bridge- or hollow-site of the MF₆ core. According to the MP2 results, the MF₆Li₄⁺ cations have lower vertical electron affinities (EA_vert, 2.618–3.212 eV) than the threshold of 3.89 eV, verifying their superalkali identity. Besides, the MF₆Li₄⁺ configurations with more dispersive Li ligands possess lower EA_vert values. More importantly, large HOMO–LUMO gaps, binding energies per atom (E_b), and positive fragmentation energies ensure the stability of these cations.     

DFT studies on nonlinear optical properties of neutral nest-shaped heterothiometallic [MOS3Py5Cu3X] (M = Mo, W; X = F, Cl, Br, I) clusters

Theoretical calculations were carried out on some neutral nest-shaped heterothiometallic cluster compounds [MOS₃Py₅Cu₃X] (M = Mo, W; X = F, Cl, Br, I) with the high first static hyperpolarizabilities β values. The geometries of these cluster compounds were optimized by the restricted DFT method at B3LYP level with LanL2DZ base set without any constrains. In order to understand the relationship between the first static hyperpolarizabilities and the compositions of these clusters, the frontier orbital compositions and energy gaps between the HOMO and LUMO orbitals were calculated and analysed. In these clusters the HOMO orbitals are mainly composed of halogen atoms and the first static hyperpolarizability increases from F to I atom. The LUMO orbitals of clusters [MoOS₃Py₅Cu₃X] are comprised of Mo, O and S atoms while the LUMO orbitals of clusters [WOS₃Py₅Cu₃X] composed of W atom and pyridine ring. The energy gaps between the HOMO and LUMO orbitals of the clusters [MoOS₃Py₅Cu₃X] are smaller than those of the clusters [WOS₃Py₅Cu₃X]. As a result the first static hyperpolarizability values of the clusters [MoOS₃Py₅Cu₃X] are higher than those of the clusters [WOS₃Py₅Cu₃X].     

Molecular structure,vibrational spectra,NBO analysis,first hyperpolarizability,and HOMO,LUMO studies of mesityl chloride by density functional methods

The FT-IR and FT-Raman vibrational spectra of mesityl chloride (2,4,6-trimethylbenzyl chloride) were recorded. The optimized geometry and wavenumbers in the ground state were calculated using density functional (B3LYP, and B3PW91) methods with standard 6-311G(d,p) basis set. The computed B3PW91/6-311G(d,p) results show the best agreement with the experimental values over the other methods. Natural bond orbital analysis of mesityl chloride is also carried out, which confirms the occurrence of strong intermolecular bonding, stability of the molecule arising from hyperconjugative interactions, and charge delocalization. The electric dipole moment (μ), polarizability (α), and first hyperpolarizability (β₀) which results also show that the mesityl chloride might have microscopic non-linear optical behavior with non-zero values. The calculated HOMO and LUMO energies show that charge transfer occur in the molecule. The results of the calculations were applied to simulated spectra of the title compound, which show excellent agreement with observed spectra.     

Synthesis, molecular conformation, vibrational and electronic transition, isometric chemical shift, polarizability and hyperpolarizability analysis of 3-(4-methoxy-phenyl)-2-(4-nitro-phenyl)-acrylonitrile: a combined experimental and theoretical analysis

This work presents the synthesis and characterization of a novel compound, 3-(4-Methoxy-phenyl)-2-(4-nitro-phenyl)-acrylonitrile (abbreviated as 3-(4MP)-2-(4-NP)-AN, C₁₆H₁₂N₂O₃). The spectroscopic properties of the compound were examined by FT-IR, UV–vis and NMR (¹H and ¹³C) techniques. FT-IR spectrum in solid state was observed in the region 4000–400 cm⁻¹. The UV–vis absorption spectrum of the compound which dissolved in chloroform was recorded in the range of 200–800 nm. The ¹H and ¹³C NMR spectra were recorded in CDCl₃ solution. To determine lowest-energy molecular conformation of the title molecule, the selected torsion angle is varied every 10° and molecular energy profile is calculated from 0° to 360°. The structural and spectroscopic data of the molecule in the ground state were calculated using density functional theory (DFT) employing B3LYP/6-31G(d,p) basis set. The dipole moment, linear polarizability and first hyperpolarizability values were also computed using the same basis set. A study on the electronic properties, such as HOMO and LUMO energies, were performed by time-dependent DFT (TD-DFT) approach. The HOMO and LUMO analysis were used to elucidate information regarding charge transfer within the molecule. The vibrational wavenumbers were calculated and scaled values were compared with experimental FT-IR spectrum. The complete assignments were performed on the basis of the experimental results and total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. Isotropic chemical shifts were calculated using the gauge-invariant atomic orbital (GIAO) method. Comparison of the calculated frequencies, NMR chemical shifts, absorption wavelengths with the experimental values revealed that DFT and TD-DFT method produce good results. The linear polarizabilities and first hyperpolarizabilities of the studied molecule indicate that the title compound can be used as a good nonlinear optical material. The thermodynamic properties of the studied compound at different temperatures were calculated, revealing the correlations between standard heat capacity, standard entropy, standard enthalpy changes and temperatures.     

Electronic and Chemical Characterization of Aluminum–Nitrogen (AlN) Substituted Fullerenes: C58AlN to C24Al12N12

Density functional theory calculations (B3LYP/6-311G*) are applied to devise a series of AlN-substituted C₆₀ fullerenes, avoiding weak homonuclear Al–Al and N–N bonds. The substitutional structures, energy gaps between the highest occupied molecular orbital and the lowest unoccupied molecular orbital, ionization potentials, binding energies, as well as dipole moments have been systematically investigated. The band gap (HOMO–LUMO gap) is larger for all the AlN-substituted fullerenes than C₆₀. The properties of heterofullerenes, especially, the HOMO–LUMO strongly depend on the number of AlN units. Natural charge analyses indicate that doping of fullerene with AlN units exerts electronic environment diversity to the cage. High charge transfer on the surfaces of our heterofullerenes provokes more studies on their possible application for hydrogen storage.     

Structural and electronic properties of heptachlor

In this work, the molecular geometry of heptachlor is investigated using ab initio HF, DFT, LDA, and GGA methods. The natural bond orbital (NBO) analysis is performed at the B3LYP/6-311++G(d,p) level of theory. The first order hyperpolarizability β_total, the mean polarizability Δα, the anisotropy of the polarizability Δα, and the dipole moment μ, are calculated by B3LYP/6-311++G(d,p) and HF/6- 311++G(d,p) methods. The first order hyperpolarizability (β_total) is calculated based on the finite field approach. UV spectral parameters along with HOMO, LUMO energies for heptachlor are determined in vacuum and the solvent phase using HF, DFT, and TD-DFT/B3LYP methods implemented with the 6-311++G(d,p) basis set. Atomic charges and electron density of heptachlor in vacuum and ethanol are calculated using DFT/B3LYP and TD-DFT/B3LYP methods and the 6-311++G(d,p) basis set. In addition, after the frontier molecular orbitals (FMOs), the molecular electrostatic potential (MEP), the electrostatic potential (ESP), the electron density (ED), and the solvent accessible surface of heptachlor are visualized as a results of the B3LYP/6-311++G(d,p) calculation. Densities of states (DOS), the external electric field (EF) effect on the HOMO-LUMO gap, and the dipole moment are investigated by LDA and GGA methods.     

Über die Darstellung der N-Chlor-N-Methylammoniumsalze (CH3)nNCl4–n+MF6− (n = 1–3; M = As,Sb) und (CH3)2NCIX+MF6− (X = F,Br)

About the Preparation of N-Chloro-N-Methylammonium Salts (CH₃)_nNCl_4–n⁺MF₆^? (n = 1–3; M = As, Sb) and (CH₃)₂NClX⁺MF₆^? (X = F, Br) Simple one-step methods for the preparation of the methylated chloroammonium salts (CH₃)_nNCl_4–n⁺MF₆^? (n = 1–3; M = As, Sb) and for (CH₃)₂NClX⁺MF₆^? (X = F, Br) are reported. Their vibrational and NMR-spectroscopical data are discussed in comparison.     

Global Reactivity of Heterostructure Armchair BC2N‐(4,4) Nanotubes: A Density Functional Theory Investigation

Electronic structures of three types of heterostructure armchair BC₂N nanotube besides armchair (4,4)CNT and (4,4)BNNT were calculated by the B3LYP method of density functional theory. The reactivities of nanotubes were discussed by means of obtained vertical ionization potentials and electron affinity potentials. The corresponding electrophilicity values are well correlated with those obtained from the HOMO and LUMO energies of the nanotubes. The good linear correlation found between ω(I,A) and ω(H,L) allows to confirm the use of the easily available B3LYP/6‐31G(d) HOMO and LUMO energies to obtain reasonable values of the global electrophilicity index of nanotubes at a lower computational cost. © 2013 Wiley Periodicals, Inc. Heteroatom Chem 24:168–173, 2013; View this article online at wileyonlinelibrary.com . DOI 10.1002/hc.21078     

Geometrical structure and nonlinear response variations of metal (M = Ni2+, Pd2+, Pt2+) octaphyrin complex derivatives: A DFT study

Nonlinear optical response of designed organometallic complexes of Ni²⁺, Pd²⁺, and Pt²⁺ metal ions with octaphyrin (OP) as ligand were explored by using DFT at CAM-B3LYP/6–311G++(d, p)/LANL2DZ/DEF2SV level of theory. The geometries of these organometallic complexes were studied in terms of effect on molecular framework by metal ion and substituent groups. The optimized geometry of free ligand displays that one of the four pyrrole rings orients out of plane to reduce the steric hindrance. The effect of the substituents on the geometry was found more prominent in the Ni²⁺-OP complexes. The calculations reveal enhancement in the values of dipole moment and hyperpolarizability on introducing electron withdrawing and electron donating groups in ligand framework with maximum enhancement in case of Pt²⁺-OP derivatives. In this study no regular trend was observed for the HOMO and LUMO energies with the second-order hyperpolarizability of M²⁺-OP complexes. However, we have observed that the excited-state properties calculated by using TD-DFT correlate well with the second-order hyperpolarizability values and the dependence was rationalized in terms of two-level model. Thus, from overall calculations we have observed that the designed organometallic complexes display higher polarizability and hyperpolarizability values and can be effective candidates for nonlinear response.     

Crystal structure and NMR study of 4-amino-1,2,4-triazolium hexafluoridoniobate(V) and hexafluoridotantalate(V)

4-Amino-1,2,4-triazolium hexafluoridoniobate(V) and hexafluoridotantalate(V) (C₂H₅N₄)MF₆ (M = Nb, Ta) crystallizing in the monoclinic system (space group P2₁/n) are synthesized for the first time and their crystal structures and spectroscopic features are studied by single crystal X-ray diffraction and ¹H and ¹⁹F NMR spectroscopy. The crystal structures of isostructural (C₂H₅N₄)MF₆ compounds are formed of octahedral complex [MF₆]^– anions (M = Nb, Ta) and monoprotonated heterocyclic 4-amino-1,2,4-triazolium cations (C₂H₅N₄)⁺ organized in a three-dimensional structure via N–H···F and N–H···N hydrogen bonds. The character and types of ion motions in the fluoride sublattice of (C₂H₅N₄)MF₆ are determined in a wide temperature range.     

Structure,spectroscopy and electronic properties of neutral lattice-like (MgO) n clusters: a study based on a blending of DFT with stochastic algorithms inspired by natural processes

In this article, we explore the feasibility of using stochastic optimization techniques, which are inspired by natural processes, namely simulated annealing (SA) and genetic algorithm (GA) in association with DFT, to find out the global minimum structures of (MgO) _n clusters with n being in the range of 2–15. To check whether the structures are indeed the correct ones, we proceed to do several property calculations like IR-spectroscopic modes, vertical excitation energy, cluster-formation energy, vertical ionization potential, the HOMO–LUMO gap as well as polarizability and hyperpolarizability—both static and dynamic. We emphasize on the point that an initial determination of structure using SA/GA leads to very quick relaxation to structures which are very close to the structures predicted from quantum chemical calculations done from the outsets like DFT. The general pattern of these systems to form beautiful three-dimensional lattice networks is also evident from our study.     

Effects of different basis sets and donor‐acceptor groups on linear and second‐order nonlinear optical properties and molecular frontier orbital energies

The calculation of molecular hyperpolarizability, molecular frontier orbital energies of some donor‐acceptor oxadiazoles ( 5a – f , 8a – f , and 9a – f ) have been investigated using ab initio methods and different basis sets. Ab initio optimizations were performed at the Hartree–Fock (HF) and density functional (Beckee‐3–Lee–Yang–Parr; B3LYP) levels of theory with 6‐31G basis set. The polarizability (<α>), anisotropy of polarizability (Δα), and ground‐state dipole moment (μ), first hyperpolarizability (β), and molecular frontier orbital (HOMO, highest occupied molecular orbital and LUMO, lowest unoccupied molecular orbital) energies of 5a – f , 8a – f , and 9a – f have been calculated at the HF and B3LYP methods with 6‐31G, 6‐31G(d), 6‐31+G(d), 6‐31++G(d,p), 6‐311G, 6‐311G(d), 6‐311+G(d), and 6‐311++G(d,p) basis sets. Also, the molecular hardness (η) and electronegativity (χ) parameters have been obtained using molecular frontier orbital energies. The <α>, Δα, μ, β, HOMO, LUMO energies, η and χ parameters have been investigated as dependence on the choice of method and basis set. The variation graphics of <α>, Δα, μ, β, η, and χ parameters using HF and B3LYP methods with different basis sets are presented. We have examined the frontier molecular orbital pictures of 5a – f , 8a – f , and 9a – f using B3LYP/6‐31++G(d,p) level. The 5a – f , 8a – f , and 9a – f display significant linear, second‐order molecular nonlinearity, and molecular parameters and provide the basis for future design of efficient nonlinear optical materials having the 1,3,4‐oxadiazole core. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

ChemInform Abstract: Quantum‐Chemical Calculations and IR Spectra of the (F2)MF2 Molecules (M: B,Al, Ga,In, Tl) in Solid Matrices: A New Class of Very High Electron Affinity Neutral Molecules.

The new class of neutral adduct molecules (F₂)MF₂ (M: B, Al, Ga, In, Tl) forms by reaction of laser‐ablated group 13 metal atoms with F₂ in excess Ar and Ne during condensation at 5 K.     

Modeling of the electronic,optoelectronics, photonic and thermodynamics properties of 1,4-bis(3-carboxyl-3-oxo-prop-1-enyl) benzene molecule

The modeling of the molecule 1,4-bis(3-carboxyl-3-oxo-prop-1-enyl) benzene has been carried out to study the electronic, optoelectronics, photonic and thermodynamics properties using Hartree–Fock, density functional theory (B3LYP) and MP2 (Möller–Plesset perturbation theory second-order) with the 6-31G and 6-31+G** basis sets. The dipole moment (µ), polarizability (〈α〉), first hyperpolarizability (β _mol), dielectric constant (ε), electric susceptibility (χ), refractive index (η) and thermodynamics properties of this molecule have been calculated using the same level of theory. The small values of ε, and LUMO–HOMO energy gap, and the high values of χ, η, MR, 〈α〉 and (β _mol) show that the molecule has very good electronic, optoelectronic and photonic applications. The results of this study show that this molecule is an interesting pi-conjugated molecule whose electronic structure and properties can be regulated over a wide range by variation in backbone structure, by side group substitution, and through intramolecular hydrogen bonding.     

Reactivity of a Tetra(o‐tolyl)diborane(4) Dianion as a Diarylboryl Anion Equivalent

Lithium and magnesium salts of tetra(o‐tolyl)diborane(4) dianion, having B=B double bond character, were synthesized. It was clarified that the lithium salt of the dianion has a high‐lying HOMO and a narrow HOMO–LUMO gap, which were perturbed by dissociation of Li⁺ cation, as judged by UV/Vis spectroscopy and DFT calculations. The lithium salt of the dianion reacted as two equivalents of a diarylboryl anion with CH₂Cl₂ or S₈ to give boryl‐substituted products.     

2,2′‐[(Disulfanediyl)bis{5‐[(1E)‐(2‐hydroxybenzylidene)amino]‐1,3‐thiazole‐4,2‐diyl}]diphenol: synthesis,crystal structure and calculation of molecular hyperpolarizability

The title Schiff base compound {systematic name: 2‐[5‐[(E )‐(2‐hydroxybenzylidene)amino]‐4‐(2‐{5‐[(E )‐(2‐hydroxybenzylidene)amino]‐2‐(2‐hydroxyphenyl)‐1,3‐thiazol‐4‐yl}disulfanyl)‐1,3‐thiazol‐2‐yl]phenol}, C₃₂H₂₂N₄O₄S₄, incorporating a disulfanediyl (dithio) linkage, was obtained from the condensation reaction between two equivalents of salicylaldehyde and one equivalent of dithiooxamide in dimethylformamide, and was characterized by elemental analysis, IR spectroscopic analysis and single‐crystal X‐ray diffraction. A one‐dimensional chain is formed along the b axis via double intermolecular C—H…S hydrogen bonds. The HOMO (highest occupied molecular orbital) and LUMO (lowest unoccupied molecular orbital) energies and some related molecular parameters were calculated at the B3LYP/6‐311G(d,p) level of theory. The molecular hyperpolarizability was also calculated.