3D sensitivity encoded ellipsoidal MR spectroscopic imaging of gliomas at 3T

Purpose

The goal of this study was to implement time efficient data acquisition and reconstruction methods for 3D magnetic resonance spectroscopic imaging (MRSI) of gliomas at a field strength of 3T using parallel imaging techniques.

Methods

The point spread functions, signal to noise ratio (SNR), spatial resolution, metabolite intensity distributions and Cho:NAA ratio of 3D ellipsoidal, 3D sensitivity encoding (SENSE) and 3D combined ellipsoidal and SENSE (e-SENSE) k-space sampling schemes were compared with conventional k-space data acquisition methods.

Results

The 3D SENSE and e-SENSE methods resulted in similar spectral patterns as the conventional MRSI methods. The Cho:NAA ratios were highly correlated (P<.05 for SENSE and P<.001 for e-SENSE) with the ellipsoidal method and all methods exhibited significantly different spectral patterns in tumor regions compared to normal appearing white matter. The geometry factors ranged between 1.2 and 1.3 for both the SENSE and e-SENSE spectra. When corrected for these factors and for differences in data acquisition times, the empirical SNRs were similar to values expected based upon theoretical grounds. The effective spatial resolution of the SENSE spectra was estimated to be same as the corresponding fully sampled k-space data, while the spectra acquired with ellipsoidal and e-SENSE k-space samplings were estimated to have a 2.36–2.47-fold loss in spatial resolution due to the differences in their point spread functions.

Conclusion

The 3D SENSE method retained the same spatial resolution as full k-space sampling but with a 4-fold reduction in scan time and an acquisition time of 9.28 min. The 3D e-SENSE method had a similar spatial resolution as the corresponding ellipsoidal sampling with a scan time of 4:36 min. Both parallel imaging methods provided clinically interpretable spectra with volumetric coverage and adequate SNR for evaluating Cho, Cr and NAA.     

Post-processing central k-space subtraction for high-resolution arterial peripheral MR angiography

Peripheral MR angiography requires high resolution and arterial contrast. Neither can be obtained simultaneously due to the short arterial phase of the contrast agent. To improve temporal resolution, keyhole imaging was developed, which combines high resolution and arterial k-spaces at the time of image acquisition. Here, a related approach is introduced for image post-processing in the Fourier domain. It is demonstrated that simple substitution of the central k-space with low-resolution data leads to severe distortion. Hence, a dedicated calculation scheme is necessary for composite k-space post-processing. A solution is presented for high-resolution arterial peripheral MR angiography that uses subtraction of venous intensities from the central high-resolution k-space. The calculations in the Fourier domain do not require interpolations between the different resolutions. High-resolution steady-state MR angiography, which exhibits contrast-enhanced arteries and veins at an isotropic resolution of 0.65 mm, and standard resolution arterial first-pass MR angiography were combined to obtain images with the resolution of the steady-state images and arterial contrast. Numerical simulations on software phantoms are presented. The operation of the method is demonstrated in five patients.     

An iterative reconstruction technique for geometric distortion-corrected segmented echo-planar imaging

In this article, we present a modified interleaved segmented echo-planar imaging (SEPI) sequence with a center-out k-space trajectory that is especially designed for susceptibility-weighted imaging applications. We introduce a simple and efficient technique to phase correct the acquired SEPI data in the presence of moderate field inhomogeneities. This phase correction reduces the distortion in the phase-encoding direction without requiring an extra reference scan. With the use of a center-out k-space trajectory and a low-spatial-frequency phase map, phase discontinuities between segments can be eliminated, in principle, iteratively using a fast Fourier transform from the center segment to the outermost segment in k-space. With an extra echo added in front of the echo train, neither phase unwrapping nor an extra reference scan is required to obtain a low-spatial-frequency phase map. The method is shown to remove blurring and reduce geometric distortion caused by phase changes from echo to echo in both phantom and human data. The method is most useful for high-resolution imaging applications and moderate factors of speed improvement.     

Self-gated Fourier velocity encoding

Self-gating is investigated to improve the velocity resolution of real-time Fourier velocity encoding measurements in the absence of a reliable electrocardiogram waveform (e.g., fetal magnetic resonance or severe arrhythmia). Real-time flow data are acquired using interleaved k-space trajectories which share a common path near the origin of k-space. These common data provide a rapid self-gating signal that can be used to combine the interleaved data. The combined interleaves cover a greater area of k-space than a single real-time acquisition, thereby providing higher velocity resolution for a given aliasing velocity and temporal resolution. For example, this approach provided velocity spectra with a temporal resolution of 19 ms and velocity resolution of 22 cm/s over an 818 cm/s field-of-view. The method was validated experimentally using a computer-controlled pulsatile flow apparatus and applied in vivo to measure aortic-valve flow in a healthy volunteer.     

Keyhole and zero-padding approaches for reduced-encoding diffusion tensor imaging of the mouse brains

Keyhole diffusion tensor imaging (keyhole DTI) was previously proposed in cardiac imaging to reconstruct DTI maps from the reduced phase-encoding images. To evaluate the feasibility of keyhole DTI in brain imaging, keyhole and zero-padding DTI algorithms were employed on in vivo mouse brain. The reduced phase-encoding portion, also termed as the sharing rate, was varied from 50% to 90% of the full k-space. Our data showed that zero-padding DTI resulted in decreased fractional anisotropy (FA) and decreased mean apparent diffusion coefficient (mean ADC) in white matter (WM) regions. Keyhole DTI showed a better edge preservation on mean ADC maps but not on FA maps as compared to the zero-padding DTI. When increasing the sharing rate in keyhole approach, an underestimation of FA and an over- or underestimation of mean ADC were measured in WM depending on the selected reference image. The inconsistency of keyhole DTI may add a challenge for the wide use of this modality. However, with a carefully selected directive diffusion-weighted image to serve as the reference image in the keyhole approach, this study demonstrated that one may obtain DTI indices of reduced-encoding images with high consistency to those derived with full k-space DTI.     

Negative U-centers and defect superconductivity

A connection between the formation of defect bipolarons (i.e. U-centers or U-bipolarons) and superconductivity in high-T_csuperconductors (HTSC) is considered in two pairing limits of carriers in realr- andk-spaces. The irrelevance ofr-space U-bipolarons to superconductivity is motivated. It is shown that the formation ofk-space U-bipolarons and their subsequent attractive single particle and pair condensation lead to depressed (in comparison with lattice bipolarons) superconductivity due to a large mass of such U-bipolarons. It is argued that the coexistence ofk-space lattice bipolarons andr-space U-bipolarons leads to the shift of the maximum of the concentration dependenceT_c(n)to higher carrier concentrations, in accordance with the observations in HTSC.     

Excitonic polariton dispersion in CuBr determined by resonant Raman scattering under two-photon excitation of excitonic molecules

The excitonic polariton dispersion in wide k-space for k∥[111] is measured through the two-photon-resonant Raman scattering with the use of the double beam excitation technique. The k-linear effect, the heavy and light masses and the polariton effect of the Z_1,2 exciton are clarified.     

Surface nanostructure effects on optical properties of Pb(Zr x Ti1−x )O3 thin films

Optical scattering properties of nanostructured matter have crucial impact on performance efficiency of various photonic components, such as waveguides, display elements, and solar cells. In this paper, diffuse transmission properties of nanocrystalline Pb(Zr _x Ti_1?x )O₃ thin films with a high refractive index of ~2.5 and optical transmittance are presented. Thin films with a thicknesses ranging from 50 to 500 nm were studied using integrating sphere technique and results were compared to simulations performed by a scalar scattering theory. Thin films were deposited by pulsed laser deposition at room temperature on MgO(100) substrates and post-annealed at a temperature of 800 °C. Structural phase evolution-induced surface effects, which introduced periodicity on the film surface, cause the definite diffuse elements in transmission spectra of the films. Low and evenly distributed scattering amplitudes in k-space were seen for highly tetragonal- or trigonal-oriented films with non-textured surfaces, which led to low diffuse transmission values (T _D ≈ 5 %), while confined and increased scattering amplitudes in k-space were seen for tetragonal–trigonal-oriented films, with phase co-existence, which led to microstructure-induced textured surfaces and increased diffuse transmission values (T _D ≈ 50 %). For highly textured surfaces, scattering amplitudes distributed in tilted ellipsoid shape in k-space was observed. Difference between modeled and measured values was 3.8 % in maximum.     

Three dimension double inversion recovery gray matter imaging using compressed sensing

The double inversion recovery (DIR) imaging technique has various applications such as black blood magnetic resonance imaging and gray/white matter imaging. Recent clinical studies show the promise of DIR for high resolution three dimensional (3D) gray matter imaging. One drawback in this case however is the long data acquisition time needed to obtain the fully sampled 3D spatial frequency domain (k-space) data. In this paper, we propose a method to solve this problem using the compressed sensing (CS) algorithm with contourlet transform. The contourlet transform is an effective sparsifying transform especially for images with smooth contours. Therefore, we applied this algorithm to undersampled DIR images and compared with a CS algorithm using wavelet transform by evaluating the reconstruction performance of each algorithm for undersampled k-space data. The results show that the proposed CS algorithm achieves a more accurate reconstruction in terms of the mean structural similarity index and root mean square error than the CS algorithm using wavelet transform.     

Image registration guided,sparsity constrained reconstructions for dynamic MRI

It is generally a challenging task to reconstruct dynamic magnetic resonance (MR) images with high spatial and high temporal resolutions, especially with highly incomplete k-space sampling. In this work, a novel method that combines a non-rigid image registration technique with sparsity-constrained image reconstruction is introduced. Employing a multi-resolution free-form deformation technique with B-spline interpolations, the non-rigid image registration accurately models the complex deformations of the physiological dynamics, and provides artifact-suppressed high spatial-resolution predictions. Based on these prediction images, the sparsity-constrained data fidelity-enforced image reconstruction further improves the reconstruction accuracy. When compared with the k-t FOCUSS with motion estimation/motion compensation (MEMC) technique on volunteer scans, the proposed method consistently outperforms in both the spatial and the temporal accuracy with variously accelerated k-space sampling. High fidelity reconstructions for dynamic systolic phases with reduction factor of 10 and cardiac perfusion series with reduction factor of 3 are presented.     

Spiral demystified

Spiral acquisition schemes offer unique advantages such as flow compensation, efficient k-space sampling and robustness against motion that make this option a viable choice among other non-Cartesian sampling schemes. For this reason, the main applications of spiral imaging lie in dynamic magnetic resonance imaging such as cardiac imaging and functional brain imaging. However, these advantages are counterbalanced by practical difficulties that render spiral imaging quite challenging. Firstly, the design of gradient waveforms and its hardware requires specific attention. Secondly, the reconstruction of such data is no longer straightforward because k-space samples are no longer aligned on a Cartesian grid. Thirdly, to take advantage of parallel imaging techniques, the common generalized autocalibrating partially parallel acquisitions (GRAPPA) or sensitivity encoding (SENSE) algorithms need to be extended. Finally, and most notably, spiral images are prone to particular artifacts such as blurring due to gradient deviations and off-resonance effects caused by B₀ inhomogeneity and concomitant gradient fields. In this article, various difficulties that spiral imaging brings along, and the solutions, which have been developed and proposed in literature, will be reviewed in detail.     

Phase gradient imaging for positive contrast generation to superparamagnetic iron oxide nanoparticle-labeled targets in magnetic resonance imaging

Positive contrast imaging methods produce enhanced signal at large magnetic field gradient in magnetic resonance imaging. Several postprocessing algorithms, such as susceptibility gradient mapping and phase gradient mapping methods, have been applied for positive contrast generation to detect the cells targeted by superparamagnetic iron oxide nanoparticles. In the phase gradient mapping methods, smoothness condition has to be satisfied to keep the phase gradient unwrapped. Moreover, there has been no discussion about the truncation artifact associated with the algorithm of differentiation that is performed in k-space by the multiplication with frequency value. In this work, phase gradient methods are discussed by considering the wrapping problem when the smoothness condition is not satisfied. A region-growing unwrapping algorithm is used in the phase gradient image to solve the problem. In order to reduce the truncation artifact, a cosine function is multiplied in the k-space to eliminate the abrupt change at the boundaries. Simulation, phantom and in vivo experimental results demonstrate that the modified phase gradient mapping methods may produce improved positive contrast effects by reducing truncation or wrapping artifacts.     

Accelerated 3D Coronary Vessel Wall MR Imaging Based on Compressed Sensing with a Block-Weighted Total Variation Regularization

Coronary vessel wall magnetic resonance (MR) imaging is important for heart disease diagnosis but often suffers long scan time. Compressed sensing (CS) has been previously used to accelerate MR imaging by reconstructing an MR image from undersampled k-space data using a regularization framework. However, the widely used regularizations in the current CS methods often lead to smoothing effects and thus are unable to reconstruct the coronary vessel walls with sufficient resolution. To address this issue, a novel block-weighted total variation regularization is presented to accelerate the coronary vessel wall MR imaging. The proposed regularization divides the image into two parts: a region-of-interest (ROI) which contains the coronary vessel wall, and the other region with less concerned features. Different penalty weights are given to the two regions. As a result, the small details within ROI do not suffer from over-smoothing while the noise outside the ROI can be significantly suppressed. Results with both numerical simulations and in vivo experiments demonstrated that the proposed method can reconstruct the coronary vessel wall from undersampled k-space data with higher qualities than the conventional CS with the total variation or the edge-preserved total variation.     

Contrast changes in portal vein and bile duct between centric and linear k-space ordering on three-dimensional segmented true fast imaging with steady-state precession magnetic resonance imaging

Purpose

To compare the degree of visualization of the bile duct and portal vein in terms of the difference in k-space ordering on a three-dimensional (3D) segmented true fast imaging with steady-state precession (trueFISP) sequence.

Materials and Methods

A breath-hold coronal 3D segmented trueFISP sequence was prospectively performed on 14 healthy volunteers. Images obtained with centric and linear k-space ordering in the k(x)–k(y) plane were compared by two independent radiologists qualitatively with depiction scores on a five-point scale (1=not seen to 5=excellent depiction) using the Wilcoxon signed-rank test. Images were also compared quantitatively using relative contrast values for the bile duct and portal vein against the hepatic parenchyma using a paired t-test.

Results

With centric ordering, both the mean depiction scores and relative contrast values for the portal vein were significantly lower than those with linear ordering (1.5 vs. 3.5, P<.01; and 0.08±0.19 vs. 0.51±0.10, P<.01, respectively). However, in the bile duct, there were no significant differences, only slight differences were found among the results obtained with centric and linear ordering (3.9 vs. 3.8, P=.72; and 0.59±0.06 vs. 0.68±0.06, P<.01, respectively).

Conclusion

For visualizing the bile duct, centric k-space ordering on 3D segmented trueFISP sequence is recommended, while linear ordering is recommended for portal vein visualization.     

Location of direct transitions on the Λ line of the band structure of the noble metals using angle resolved photoelectron spectroscopy (ARUPS)

The triangulation method of angle-resolved photoemission for the absolute localization of direct transitions in k-space has been used on (110) and (111) faces in the ΓKLUX or (1$\text{1}$0) mirror plane in order to determine some points of the electronic bulk band structure of Cu, Ag and Au along the Λ line. It is found that the experimental points for the occupied bands and the unoccupied bands are in good agreement with recent ground state band structure calculations based on the local density functional theory.     

Simultaneous measurement of localized heat release with OH/CH2O-LIF imaging and spatially integrated OH∗ chemiluminescence in turbulent swirl flames

The in-situ and localized observation of heat release in turbulent flames is important for the validation of computational modeling of turbulent flows with combustion. In the present work we obtain localized information on heat release rate (HRR) by the commonly accepted technique of the simultaneous and single-shot planar imaging of OH and CH₂O concentrations by laser-induced fluorescence (LIF). Additionally, we combine this with the simultaneous line-of-sight and temporally resolved chemiluminescence detection of OH^?, spatially integrated within the flame volume, interrogated by the laser sheets used for the HRR imaging technique. The combined diagnostic methods are demonstrated for a swirl-stabilized, premixed turbulent methane/air flame of 30-kW thermal power, and they show the existence of correlations between both HRR-sensitive diagnostic techniques.     

The electronic spectrum and the metal-insulator transition in the Hubbard model

Calculations of quasiparticle spectra including high-order terms in the irreducible Green function method are presented. The metal-insulator transition of the 2.5-kind is connected with Fermi-surface collapse. In the band limit Fermi-liquid behaviour is obtained for the whole k-space except a small region near the Fermi surface where two quasibands exist which obey Gibbs statistics.     

Electronic states in disordered systems with statistical correlations: Self-consistent born approximation

The electronic states in a weak, spatially correlated disordered potential are investigated using a translationally invariant formalism within a tight binding model. The effect of the disorder is mapped intok-space. The influence of the statistical correlation on the density of states and their localization properties is studied in the one-dimensional limit. It is shown that clustering supports tail states while the middle of the band is strongly affected by rapidly alternating configurations.     

Z intensity-weighted position self-respiratory gating method for free-breathing 3D cardiac CINE imaging

A free-breathing 3D cine steady-state free precession (SSFP) technique was developed using the z intensity-weighted position (ZIP) which is the center of mass of a projection along the slice direction as a respiratory gating signal. The ZIP signal was continuously acquired using a slice encoded k-space center sampling in every TR. The performance of this gating method was compared with a method using the k-space center signal (KC) and with conventional 2D breath-hold cine SSFP in healthy subjects by measuring image quality and left ventricular function. The preliminary data obtained here demonstrated that the ZIP gating method provided superior respiratory motion artifact suppression when compared to the KC gating and provided left ventricular ejection fractions, and end-diastolic and end-systolic volumes similar to those obtained with the breath-hold 2D cine SSFP acquisition.