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1.
Quinacridones are industrially important hydrogen-bonded pigments. The color in the solid state is vivid red, while it is pale yellow in solution, indicating evidently the involvement of intermolecular interactions in the solid state. The electronic structure has therefore been investigated with special attention to the role of intermolecular NH...O hydrogen bonds for three representative quinacridone compounds with different hydrogen-bond forming characteristics: unsubstituted gamma-quinacridone (gamma-QA) with two NH groups, mono-N-methylquinacridone (MMQA) with one NH and one CH(3), and N,N'-dimethyl-quinacridone (DMQA) with two CH(3) groups. The number of the NH...O hydrogen bonds per molecule is four, two, and zero for gamma-QA, MMQA, and DMQA, respectively. In solution, no significant difference in absorption maximum is recognized between gamma-QA, MMQA, and DMQA. However, in the solid state, the absorption maximum of gamma-QA appears at the longest wavelength, followed by MMQA and then DMQA, depending on the number of NH...O intermolecular hydrogen bonds. The role of the hydrogen bond is found to align transition dipoles in a "head-to-tail" fashion and to displace the absorption band toward longer wavelengths due to excitonic interactions. The extent of the spectral shift increases with increasing number of hydrogen bonds per molecule.  相似文献   

2.
The hydrogen bonds in films of the polyurethane and the core‐shell type polyacrylate‐polyurethane microemulsions have been studied by FTIR spectroscopy in the regions of  NH absorption and CO absorption. The effects on hydrogen bonds of the composition, the core‐shell ratio were revealed. At the same time, the relationship between the hydrogen bonds and the crosslinked structures (Type A and Type B) was discovered. The shifts of the  NH and CO stretching bands to higher frequencies and the shift of  NH bending bands to lower frequencies, with the increase of acetone CO number in the core, mean that the hydrogen bonds between the soft and hard segments, and those in the short‐range order in the hard segment phase, are broken. The dipole/dipole interaction which is supposed to exist between the acetone CO groups in the core and the urethane CO in the shell can change the hydrogen bond distribution in the shell, and at the same time, lead to hydrogen bonds between acetone CO in the core and the urethane  NH in the shell. Type A and B crosslinked structure between the core and the shell located at the interface of the core and the shell can confine the acetone CO within the crosslinking network, and Type B crosslinked structure also decreases the acetone CO numbers. These weaken the dipole/dipole interaction between the acetone CO and the urethane CO, and lead to the decrease of the effect of the acetone CO groups on the hydrogen bond distribution in the shell. © 1999 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 37: 2642–2650, 1999  相似文献   

3.
Ab initio quantum calculations are applied to both the parallel and the antiparallel arrangements of the beta-sheets of proteins. The energies of the NH...O and CH...O hydrogen bonds present in the beta-sheet are evaluated separately from one another by appropriate modifications of the model systems. The bond energies of these two sorts of hydrogen bonds are found to be very nearly equal in the parallel beta-sheet. The NH...O bonds are stronger than CH...O in the antiparallel geometry but only by a relatively small margin. Moreover, the former NH...O bonds are weakened when placed next to one another, as occurs in the antiparallel beta-sheet. As a result, there is little energetic distinction between the NH...O and CH...O bonds in the full antiparallel beta-sheet, just as in the parallel structure.  相似文献   

4.
A vibrational analysis of 2-fold hydrogen bonds between an isophthalic amide donor and different acceptors is presented. These systems can be considered as mimetics for the hydrogen-binding situation of numerous supramolecular compounds such as rotaxanes, catenanes, knotanes, and anion receptors. We calculated pronounced red-shifts up to 65 cm(-1) for the stretching modes of the acceptor carbonyl as well as for the donor NH2 groups, whereas we observe a blue shift for the NH2 bending modes and an additional weak hydrogen bond between the acceptor and the middle C-H group of the donor. The red and blue shifts observed for different modes in various complexes have been correlated with the binding energy of the complexes, independently. In comparison with comparable single hydrogen bonds, we find for the 2-fold hydrogen bonds smaller red shifts for the N-H stretch modes of the donor but larger red shifts for the C=O stretch mode of the acceptor. Furthermore, our results indicate that the pronounced blue shift of the C-H stretch mode is basically caused by the fact that the acceptor is fixed directly above this group due to the 2-fold hydrogen bond.  相似文献   

5.
Carboxyl (COO?) vibrational modes of two amino acids histidine and glycine in D2O solution were investigated by temperature-dependent FTIR spectroscopy and temperature-jump nanosecond time-resolved IR di?erence absorbance spectroscopy. The results show that hydrogen bonds are formed between amino acid molecules as well as between the amino acid molecule and the solvent molecules. The asymmetric vibrational frequency of COO? around 1600-1610 cm?1 is blue shifted when raising temperature, indicating that the strength of the hydrogen bonds becomes weaker at higher temperature. Two bleaching peaks at 1604 and 1612 cm?1 were observed for histidine in response to a temperature jump from 10 ±C to 20 ±C. The lower vibrational frequency at 1604 cm?1 is assigned to the chain COO? group which forms the intermolecular hydrogen bond with NH3+ group, while the higher frequency at 1612 cm?1 is assigned to the end COO? group forming hydrogen bonds with the solvent molecules. This is because that the hydrogen bonds in the former are expected to be stronger than the latter. In addition the intensities of these two bleaching peaks are almost the same. In contrast, only the lower frequency at 1604 cm?1 bleaching peak has been observed for glycine. The fact indicates that histidine molecules form a dimer-like intermolecular chain while glycine forms a relatively longer chain in the solution. The rising phase of the IR absorption kinetics in response to the temperature-jump detected at 1604 cm?1 for histidine is about 30§10 ns, within the resolution limit ofour instrument, indicating that breaking or weakening the hydrogen bond is a very fast process.  相似文献   

6.
Hydration changes of poly(2-methoxyethyl vinyl ether) (PMOVE) synthesized via living cationic polymerization have been investigated during a temperature-responsive phase separation in water by using infrared spectroscopy. An aqueous PMOVE solution has lower critical solution temperatures (LCSTs) of 66 degrees C in H2O and 65 degrees C in D2O at approximately 15 wt %. During phase separation, the C-H stretching (nu(C-H)) bands of PMOVE shift downward (red shift). In particular, the IR band assigned to the antisymmetric stretching vibration of the terminal methyl groups exhibits a remarkably large red shift by 16 cm-1. The band also exhibits a red shift with increasing polymer concentration at T < Tp. Density functional theory (DFT) calculations of the models of hydrated PMOVE indicate that the shift is due mainly to the breaking of hydrogen bonds (H-bonds) between the oxygen of the methoxy groups and water and partially to the breaking of the CH...O H-bond to them.  相似文献   

7.
The properties of the intermolecular hydrogen bonds in the monoclinic (Form I) and the orthorhombic (Form II) polymorphs of paracetamol, C(8)H(9)NO(2), have been studied by single crystal polarized Raman spectroscopy (40 to 3700 cm(-1)) in a wide temperature range (5 K < T < 300 K) in relation to the dynamics of methyl-groups of the two forms. A detailed analysis of the temperature dependence of the wavenumbers, bandwidths and integral intensities of the spectral bands has revealed an essential difference between the two polymorphs in the strength and ordering of OH···O and NH···O hydrogen bonds. The compression of intermolecular hydrogen bonds is interrelated with crystal packing and the dynamics of methyl-groups. On structural compression of the orthorhombic polymorph on cooling, a compromise is to be sought between the shortening of OH···O and NH···O bonds, attractive CH···O and repulsive CH···H contacts in the crystal structure. As a result of a steric conflict at temperatures below 100 K, N-H···O hydrogen bonds become significantly disordered, and an extended intramolecular transition from the conformation "staggered" with respect to the C=O bond to the one "staggered" with respect to the NH bond is observed. In most of the studied crystals this transition was only about 60% complete even at 5 K, but in some of the crystals the orientation of all the methyl-groups became staggered with respect to the NH bond at low temperatures. This complete transition was coupled to a sharp shortening of the OH···O and NH···O hydrogen bonds at <100 K, the appearance of new additional positions of the protons in these H-bonds, and a slight strengthening of the C-HO bonds formed by methyl-groups. The same conformational transition has been observed also in the monoclinic polymorph at T < 80 K. The crystal packing in Form I prevents the O-H···O hydrogen bonds from adopting the optimum geometry, and they are significantly disordered at all the temperatures, especially at ≤200 K. The packing of molecules in Form I is also not favourable to form C-H···O hydrogen bonds involving methyl-groups. One can conclude from the comparison of diffraction and spectroscopic data that the higher stability of Form I results not from a larger strength of individual OH···O and NH···O hydrogen bonds, but is a cumulative effect: all the hydrogen bonds together stabilize the structure of the monoclinic polymorph more than that of the orthorhombic polymorph.  相似文献   

8.
The adsorption of 1-octanol at the free water surface has been investigated by Monte Carlo computer simulation. Six different systems, built up by an aqueous and a vapor phase, the latter also containing various number of octanol molecules, have been simulated. The number of the octanol molecules has been chosen in such a way that the octanol surface density varies in a broad range, between 0.27 and 7.83 micromol/m(2) in the six systems simulated. For reference, the interfacial system containing bulk liquid octanol in the apolar phase has also been simulated. The results have shown that the formation of hydrogen bonds between the interfacial water and adsorbed octanol molecules is of key importance in determining the properties of the adsorbed layer. At low octanol surface concentration values all the octanol molecules are strongly (i.e., by hydrogen bonds) bound to the aqueous phase, whereas their interaction with each other is negligibly small. Hence, they are preferentially oriented in such a way that their own binding energy (and thus their own free energy) is minimized. In this preferred orientation the O-H bond of the octanol molecule points flatly toward the aqueous phase, declining by about 30 degrees from the interfacial plane, irrespectively from whether the octanol molecule is the H-donor or the H-acceptor partner in the hydrogen bond. Hence, in its preferred orientation the octanol molecule can form at least two low energy hydrogen bonds with water: one as a H-donor and another one as a H-acceptor. Moreover, the preferred orientation of the hydrogen bonded water partners is close to one of the two preferred interfacial water alignments, in which the plane of the water molecule is parallel with the interface. When increasing the octanol surface density, the water surface gets saturated with hydrogen bonded octanols, and hence any further octanol molecule can just simply condense to the layer of the adsorbed octanols. The surface density value at which this saturation occurs is estimated to be about 1.7 micromol/m(2). Above this surface density value the hydrogen bonded octanols and their water partners are oriented in such a way that the number of the water-octanol hydrogen bonds is maximized. Hence, the preferred alignment of the O...O axes of these hydrogen bonds is perpendicular to the interface. This orientation is far from the optimal alignment of the individual octanol molecules, which is also reflected in the observed fact that, unlike in the case of many other adsorbents, the average molecular binding energy of the adsorbed octanol molecules increases (i.e., becomes less negative) with increasing octanol surface density.  相似文献   

9.
Robert Bau  Irina Tsyba 《Tetrahedron》1999,55(52):2871-14846
Amikacin is one of the important aminoglycoside antibiotics used against gram-negative bacteria. Here we report the crystal structure of amikacin that has been crystallized by vapor diffusion against polyethylene glycol. The molecule exists in a long, extended conformation, with all three six-membered rings in chair conformations and connected together by -glycosidic linkages. The orientation between the A, B and C rings of the molecule is maintained by intramolecular hydrogen bonds involving the O5 hydroxyl group and the amide NH group.  相似文献   

10.
The structure of trifluoro-N-(3-formylcyclohept-2-en-1-yl)methanesulfonamide and its self-association in solution have been studied by IR spectroscopy and quantum chemical methods [B3LYP/6-311G(d,p), AIM]; proton affinities of basic centers in its molecule have been evaluated. Trifluoro-N-(3-formylcyclohept-2-en-1-yl)methanesulfonamide in inert solvents forms cyclic dimers, whereas in crystal chain associates are more likely to be formed via hydrogen bonding between the NH and C=O groups of neighboring molecules. The carbonyl group in the title compound undergoes protonation only by the action of very strong trifluoromethanesulfonic acid. Weaker acids give rise to solvate H-complexes at the NH, C=O, and S=O groups. The topology of hydrogen bonds in dimers of different types has been analyzed in terms of the AIM theory.  相似文献   

11.
The molecular and crystal structure of NS-butyl-NO-phenyl(thiooxamide) (1) has been established by X-ray structural analysis. The thiooxamide fragment and the phenyl ring are coplanar. The conformation of 1 is stabilized by NH...O and NH...S hydrogen bonds. No conjugation between the thioamide and the oxamide fragments of the molecule occurs. In the crystal, the centrosymmetrically related molecules 1 are linked in dimers through NH ... O' intermolecular hydrogen bonds.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 485–487, February, 1996  相似文献   

12.
13.
The role of the distortion of the hydrogen bond network and of the motions of the -CH 2SH side chains in the phase transition in the orthorhombic L-cysteine ( (+)NH 3-CH(CH 2SH)-COO (-)) on cooling and the reverse transformation on heating is discussed. The extended character of the phase transition, which was recently discovered by adiabatic calorimetry [ J. Phys. Chem. B 2007, 111, 9186 ], and its very high sensitivity to the thermal prehistory of the sample could be interpreted based on the changes in the polarized Raman spectra measured for the single-crystals in several orientations in the temperature range 3-300 K and precise diffraction data on the changes in intramolecular conformations and intermolecular hydrogen bonding. In the low-temperature phase the SH...S hydrogen bonds dominate as compared to the weaker SH...O contacts, and at ambient temperature the situation is inverse. The transition from one phase to another goes via a series of states differing in conformations of the cysteine zwitterions and the intermolecular contacts of the thiol-group. Motions of different molecular fragments (NH 3 (+), CH 2, CH, SH) are activated at different temperatures. Structural strain on cooling involves several dynamic processes, such as a rigid rotation of the molecule in the lattice, a rigid rotation of the NH 3 group with respect to NH 3-CH bond, and the rotation of the thiol side chain resulting in the switching of S-H hydrogen bonding from one type to another. Different NH...O hydrogen bonds forming the framework in the L-cysteine crystal structure are distorted to a different extent, and this provokes the rotation of the -CH 2SH side chains within the cavities of this framework resulting in a change in the coordination from SH...O to SH...S at low temperatures. The results are interesting for understanding the polymorphism of molecular crystals and the factors determining their dynamics and structural instability, and also for biophysical chemistry, since the properties of the hydrogen bonded thiole-groups in biomolecules can be mimicked using L-cysteine in the crystalline state, variations in temperature and pressure serving as powerful tools, to modify the intramolecular conformations and the intermolecular hydrogen bonding.  相似文献   

14.
Vibrational circular dichroism (VCD) spectra were recorded on benzene-d(6) gels formed by chiral low molecular mass gelators (LMGs), trans(RR)- or trans(SS)-N,N'-alkanoyl-1,2-diaminocyclohexane (denoted by RR-C(n) or SS-C(n), respectively; n = the number of carbon atoms in an introduced alkanoyl group). Attention was focused on the effects of alkyl chain length on the structures of the gels. When n was changed from 6 to 12, the signs of the coupled peaks around 1550 cm(-1) in the VCD spectra, which were assigned to the symmetric and asymmetric C=O stretching vibrations from the higher to lower wavenumber, respectively, critically depended on the alkyl chain length. In the case of RR-C(n), for example, the signs of the couplet were plus and minus for n = 8, 9, 10 and 12, while the signs of the same couplet were reversed for n = 6 and 7. The conformations of LMGs in fibrils were determined by comparing the observed IR and VCD spectra with those calculated for a monomeric molecule. The observed reversal of signs in the C=O couplet was rationalized in terms of the different modes of hydrogen bonding. In the case of C(8), C(9), C(10) and C(12), gelator molecules were stacked with their cyclohexyl rings in parallel, forming double anti-parallel chains of intermolecular hydrogen bonds using two pairs of >NH and >C=O groups. In case of C(6) and C(7), gelator molecules were stacked through a single chain of intermolecular hydrogen bonds using a pair of >NH and >C=O groups. The remaining pair of >NH and >C=O groups formed an intramolecular hydrogen bond.  相似文献   

15.
The molecule of the title compound (systematic name: 6‐chloroindolin‐2‐one), C8H6ClNO, is almost planar, with a dihedral angle of 1.13 (9)° between the planes of the constituent pyrrolidine and benzene rings. Centrosymmetric dimers are formed in the crystal structure by N—H...O hydrogen bonds, and these dimers are additionally linked by Cl...Cl and C—H...O interactions. Density functional theory (DFT) calculations at the B3LYP/6‐31 G(d,p) level of theory were used to optimize the molecular structure and the geometry was best reproduced by optimization of two interacting molecules. The bond orders in the molecule, estimated using the natural bond orbitals (NBO) formalism, are consistent with the observed bond lengths. In particular, the contribution of the lone pair of electrons on the N atom to the N—C bond in the N—C=O group is revealed. The measured IR spectrum of the compound shows a red shift of the N—H stretching frequency compared with the free molecule, due to the formation of the hydrogen bonds.  相似文献   

16.
NH(4)(C(6)H(5))(4)B represents a prototypical system for understanding aromatic H bonds. In NH(4)(C(6)H(5))(4)B an ammonium cation is trapped in an aromatic cage of four phenyl rings and each phenyl ring serves as a hydrogen bond acceptor for the ammonium ion as donor. Here the dynamical properties of the aromatic hydrogen bond in NH(4)(C(6)H(5))(4)B were studied by quasielastic incoherent neutron scattering in a broad temperature range (20< or =T< or =350 K). We show that in the temperature range from 67 to 350 K the ammonium ions perform rotational jumps around C(3) axes. The correlation time for this motion is the lifetime of the "transient" H bonds. It varies from 1.5 ps at T=350 K to 150 ps at T=67 K. The activation energy was found to be 3.14 kJ mol, which means only 1.05 kJ mol per single H bond for reorientations around the C(3) symmetry axis of the ammonium group. This result shows that the ammonium ions have to overcome an exceptionally low barrier to rotate and thereby break their H bonds. In addition, at temperatures above 200 K local diffusive reorientational motions of the phenyl rings, probably caused by interaction with ammonium-group reorientations, were found within the experimental observation time window. At room temperature a reorientation angle of 8.4 degrees +/-2 degrees and a correlation time of 22+/-8 ps were determined for the latter. The aromatic H bonds are extremely short lived due to the low potential barriers allowing for molecular motions with a reorientational character of the donors. The alternating rupture and formation of H bonds causes very strong damping of the librational motion of the acceptors, making the transient H bond appear rather flexible.  相似文献   

17.
The intermolecular hydrogen‐bonds between proflavine cation (PC) and water molecules are investigated by density functional theory (DFT) and time‐dependent density functional theory (TDDFT) methods. The ground‐state geometry optimizations, electronic excitation energies and corresponding oscillation strengths of the low‐lying electronically excited states for the isolated proflavine cation, the hydrogen‐bonded PC–H2O dimer and PC–(H2O)2 trimer are calculated. Intermolecular hydrogen bonds at the central site of proflavine molecule are found to be stronger than the peripheral site. The hydrogen bond N–H???O for the hydrogen‐bonded dimer are indicated to be weakened in the excited states, since the excitation energy is increased slightly comparing to the monomer. Hydrogen bonds of PC–(H2O)2 trimer with the same type as the dimer are strengthened in the excited state, which is demonstrated by the decrease of the excited energies. Thus, hydrogen bond strengthening and weakening are observed to reveal site dependent feature in proflavine molecule. Furthermore, the hydrogen bond at central site induces the blue‐shift of the absorption spectrum, while the ones at peripheral site induce red‐shift. Hydrogen bonds with the same type at peripheral and central sites of proflavine molecule provide different effects on the photochemical and photophysical properties of proflavine.  相似文献   

18.
Hydration of short-chain poly(oxyethylene)s, CH(3)(OCH(2)CH(2))(m)OCH(3) (abbreviated as C(1)E(m)()C(1)) (m = 1-3), in carbon tetrachloride has been studied by infrared spectroscopy. The O-H stretching vibrations of water in ternary solutions with H(2)O:C(1)E(m)C(1):CCl(4) mole ratios of 0.000418:0.005:0.995 to 0.000403:0.04:0.96 were analyzed. Two types of hydrogen bonds are formed in the interaction between water and C(1)E(m)C(1) in carbon tetrachloride; one is a monodentate hydrogen bond, in which only one of the O-H bonds of a water molecule participates in hydrogen bonding, and the other is a bidentate hydrogen bond, in which both of the O-H bonds of a water molecule participate in hydrogen bonding by bridging oxygen atoms separated by two or more monomer units on the polymer chain. An important finding is that the bidentate hydrogen-bond bridge is not formed between the nearest-neighbor oxygen atoms. This experimental observation supports the results of previous molecular dynamics simulations. The shortest oligomer of poly(oxyethylene), i.e., CH(3)OCH(2)CH(2)OCH(3) (1,2-dimethoxyethane) with a single monomer unit, is suggested not to be an adequate model for this polymer with respect to hydrogen bonding to water. The hydrogen bonding in a 1:1 C(1)E(m)C(1)-water adduct in carbon tetrachloride represents primitive incipient hydration of poly(oxyethylene). The present results indicate that both monodentate and bidentate hydrogen bonds are important and the latter is destabilized more rapidly than the former with increasing temperature. This dehydration process can be a potential mechanism of the poly(oxyethylene)-water phase separation.  相似文献   

19.
Fumaramide derivatives were analyzed in solution by (1)H NMR spectroscopy and in the solid state by X-ray crystallography in order to characterize the formation of CH...O interactions under each condition and to thereby serve as models for these interactions in peptide and protein structure. Solutions of fumaramides at 10 mM in CDCl(3) were titrated with DMSO-d(6), resulting in chemical shifts that moved downfield for the CH groups thought to participate in CH...O=S(CD(3))(2) hydrogen bonds concurrent with NH...O=S(CD(3))(2) hydrogen bonding. In this model, nonparticipating CH groups under the same conditions showed no significant change in chemical shifts between 0.0 and 1.0 M DMSO-d(6) and then moved upfield at higher DMSO-d(6) concentrations. At concentrations above 1.0 M DMSO-d(6), the directed CH...O=S(CD(3))(2) hydrogen bonds provide protection from random DMSO-d(6) contact and prevent the chemical shifts for participating CH groups from moving upfield beyond the original value observed in CDCl(3). X-ray crystal structures identified CH...O=C hydrogen bonds alongside intermolecular NH...O=C hydrogen bonding, a result that supports the solution (1)H NMR spectroscopy results. The solution and solid-state data therefore both provide evidence for the presence of CH...O hydrogen bonds formed concurrent with NH...O hydrogen bonding in these structures. The CH...O=C hydrogen bonds in the X-ray crystal structures are similar to those described for antiparallel beta-sheet structure observed in protein X-ray crystal structures.  相似文献   

20.
The structure and stability of hydrogen bonds in alpha-chitin were investigated by (13)C solid-state NMR measurements at different temperatures. Splitting of the carbonyl carbon signal for alpha-chitin was interpreted as two types of hydrogen bonding; the peaks at 173.5 and 175.8 ppm were assigned, respectively, to a carbonyl carbon hydrogen bonded exclusively to the NH group and a carbonyl carbon hydrogen-bonded to both NH and C(6)-OH groups. Approximately 60% of carbonyl groups exclusively contributed to the intermolecular hydrogen bonding and ca. 40% of them to the combination of intermolecular and intramolecular hydrogen bonding. Internal rotation around the C(5)-C(6) bond was detected at 55 degrees C.  相似文献   

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