XRD studies,vibrational spectra,and molecular structure of 1H‐imidazo [4,5‐b]pyridine based on DFT quantum chemical calculations

The molecular structures and vibrational properties of 1H‐imidazo[4,5‐b]pyridine in its monomeric and dimeric forms are analyzed and compared to the experimental results derived from the X‐ray diffraction (XRD), infrared (IR), and Raman studies. The theoretical data are discussed on the basis of density functional theory (DFT) quantum chemical calculations using Lee–Yang–Parr correlation functional (B3LYP) and 6‐31G(d,p) basis. This compound crystallizes in orthorhombic structure, space group Pna2₁(C_2v⁹) and Z = 4. The planar conformation of the skeleton and presence of the N H···N hydrogen bond was found to be characteristic for the studied system. The temperature dependence of IR and Raman modes was studied in the range 4–294 K and 8–295 K, respectively. The normal modes, which are unique for the imidazopyridine derivatives are identified. Copyright © 2009 John Wiley & Sons, Ltd.     

Trifluoromethanesulfonamide: X‐ray single‐crystal determination and quantum chemical calculations

The X‐ray single‐crystal structure of 1,1,1‐trifluoromethanesulfonamide (triflamide) CF₃SO₂NH₂, which is the ancestor of a large family of its derivatives, has been determined. The crystal structure is composed of infinite layers with an interlayer distance of 3.4 Å. Geometry optimization at the Møller‐Plesset (MP2) and density functional theory (DFT) level showed the calculated bond distances to be, as a rule, longer than the experimental ones. A trial to simulate crystal packing effect on the geometrical parameters by calculating the dimer of triflamide in the gas phase failed – the starting X‐ray geometry of the ‘dimeric’ unit with one NH···O=S H‐bond – was optimized to the cyclic dimer with two H‐bonds. However, when the external (crystal) field effect was simulated using the polarizable continuum model, the experimental geometry of the ‘dimeric’ fragment was satisfactorily reproduced. Calculations of the heptamer cluster having the structure of the hexagon with six triflamide molecules in vertices and one in the middle nicely reproduce the X‐ray structure and brings the geometrical parameters closer to the experiment. Copyright © 2015 John Wiley & Sons, Ltd.     

Vibrational spectra and quantum chemical calculations of uracilyl–pyridinium mesomeric betaine

Modified nucleobases (MNs) are promising molecules with potential application in non‐linear optic (NLO) and drug design against a wide number of diseases. In the present paper we report studies on a cross‐conjugated mesomeric betaine, which can act as a MN, formed by the covalent union of a 4‐dimethylamino pyridinium and a uracilyl groups. The molecule thus formed must be presented by a dipolar canonical formulae in which positive and negative charges are delocalized within separated moieties. Quantum chemistry density functional theory (DFT) calculations, at the B3PW91/6‐31G** level, and Fourier transform (FT) infrared and Raman spectra of this molecule and its N‐deuterated derivative were performed. The calculated structural properties over the ground state optimized structure evidenced a strong separation between the two conjugated systems. Comparison with previous results obtained for the cationic species indicated that N‐protonation clearly affects the degree of conjugation. Assignments of the FT‐IR and FT‐Raman spectra were supported by the DFT wavenumbers, intensities and normal modes, which also evidenced the separation of the two conjugated systems. Significant deviations were found for the stretching force constants of the inter‐ring and the uracilyl skeletal bonds when comparing this molecule with its N‐protonated species. Copyright © 2007 John Wiley & Sons, Ltd.     

Crystal and molecular structure of 2‐amino‐5‐chloropyridinium hydrogen selenate—its IR and Raman spectra,DFT calculations and physicochemical properties

The new organic‐inorganic salt, 2‐amino‐5‐chloropyridinium hydrogen selenate, has been synthesised and characterised by means of FT‐IR, FT‐Raman and single crystal X‐ray crystallography. Its vibrational spectra have been discussed on the basis of quantum chemical DFT calculations using the B3LYP/6‐31G(d,p) approach. The crystal and molecular structures have been compared and the role of the intermolecular interactions in this crystal has been analysed. The N HO interactions between the hydrogen atoms of the organic cation and oxygen atoms of hydrogen selenate anion determine the supramolecular arrangement in three‐dimensional space. The possible application of the studied composite material as a Raman laser has been discussed. Copyright © 2008 John Wiley & Sons, Ltd.     

Crystal and molecular structure of 2‐aminopyridinium‐ 4‐hydroxybenzenosulfonate—IR and Raman spectra,DFT calculations and physicochemical properties

A new organic–organic salt, 2‐aminopyridinium‐4‐hydroxybenzenosulfonate, has been synthesised and characterised by means of FT‐IR and FT‐Raman spectroscopies, differential scanning calorimetry (DSC) and single crystal X‐ray crystallography. Its vibrational spectra have been discussed on the basis of quantum chemical density functional theory (DFT) calculations using the B3LYP/6‐31G(d,p) approach. The role of the intermolecular interactions in this crystal is analysed. The N HċċċO interactions between the hydrogen atoms of the pyridinium cation and oxygen atoms of hydroxybenzenosulfonate anion built the supramolecular arrangement in three‐dimensional space. Copyright © 2008 John Wiley & Sons, Ltd.     

Vibrational spectroscopy and DFT calculations of N,N′‐dicyclohexylcarbodiimide

Infrared (IR) and Raman spectra were obtained for N,N′‐dicyclohexylcarbodiimide (DCC) in the solid state and in CHCl₃ solution. Structures and vibrational spectra of isolated, gas‐phase DCC molecules with C₂ and C_i symmetries, computed at the B3‐LYP/cc‐pVTZ level, show that the IR and Raman spectra provide convincing evidence for a C₂ structure in both the solid state and in CHCl₃ solution. Using a scaled quantum‐chemical force field, these density functional theory calculations have provided detailed assignments of the observed IR and Raman bands in terms of potential energy distributions. Comparison of solid‐state and solution spectra, together with a Raman study of the melting behaviour of DCC, revealed that no solid‐state effects were evident in the spectra. Copyright © 2010 John Wiley & Sons, Ltd.     

Molecular structure and vibrational spectra of 3 (or 4 or 6)‐methyl‐5‐nitro‐2‐pyridinethiones: FT‐IR,FT‐Raman and DFT quantum chemical calculations

IR and Raman spectra (RS) of polycrystalline 3‐(or 4 or 6)‐methyl‐5‐nitro‐2‐pyridinethione have been measured and analyzed by means of density functional theory (DFT) quantum chemical calculations. The B3LYP/6‐311G(2d,2p) approach has been applied for both the thiol and thione tautomers due to the possibility of the formation of these two thiole forms. Molecular structures of these compounds have been optimized starting from different molecular geometries of the thiol group and thione group. Two conformations of the 2‐mercaptopyridine, trans and cis, have been taken into account. It was shown that the studied compounds appear in the solid state in the thione form. The effect of the hydrogen‐bond formation in the studied compounds has been considered. Copyright © 2008 John Wiley & Sons, Ltd.     

Acid assisted proton transfer in 4‐[(4‐R‐phenylimino)methyl]pyridin‐3‐ols: NMR spectroscopy in solution and solid state,X‐ray and UV studies and DFT calculations

The behaviour of Schiff bases of 3‐hydroxy‐4‐pyridincarboxaldehyde and 4‐R‐anilines (R?H, CH₃, OCH₃, Br, Cl, NO₂) in acid media has been described. ¹H, ¹³C, ¹⁵N‐NMR chemical shifts allow to establish the protonation site and its influence on the hydroxyimino/oxoenamino tautomerism. DFT calculations, electronic spectra and X‐ray diffraction are in agreement with the NMR conclusions. Copyright © 2007 John Wiley & Sons, Ltd.     

Spectroscopic and structural investigations of α‐, β‐, and γ‐AlH3 phases

With its reputation as a high‐energy density fuel, aluminum hydride (AlH₃) has received renewed attention as a material that is particularly suitable, not only for hydrogen storage but also for rocket propulsion. While the various phases of AlH₃ have been investigated theoretically, there is a shortage of experimental studies corroborating the theoretical findings. In response to this, we present here an investigation of these compounds based primarily on two research areas in which there is the greatest scarcity of information in the literature, namely Raman and infrared (IR) absorption analysis. To the authors' knowledge, this is the first report of experimental far‐IR absorption results on these compounds. Two different samples prepared by broadly similar ethereal reactions of AlCl₃ with LiAlH₄ were analyzed. Both Raman and IR absorption measurements indicate that one sample is purely γ‐AlH₃ and that the other is a mixture of α‐, β‐, and γ‐AlH₃ phases. X‐ray diffraction confirms the spectroscopic findings, most notably for the β‐AlH₃ phase, for which optical spectroscopic data are reported here for the first time. Copyright © 2010 John Wiley & Sons, Ltd.     

DFT‐aided interpretation of the Raman spectra of the polymorphic forms of Y2Si2O7

Y₂Si₂O₇ is an intriguing material combining a complex structural polymorphism with several important technological applications. Raman spectra were experimentally determined for most of the seven known modifications of Y₂Si₂O₇ except the form ε, and in the case of β, γ, δ and ζ for the first time. The error‐prone procedure of mode assignment to the measured Raman bands, usually done by comparison with similar or related structures, has been replaced by quantum chemical calculations of the spectra of the polymorphs. Various functionals were evaluated considering the agreement of the calculated modes with the experimental data. The average and maximum deviations between calculated and experimental spectra are ± 8 cm⁻¹ and 20 cm⁻¹, respectively. Assignments of most of the observed bands to vibrational modes are given. The relationship between selected Raman bands, Si O and Y O polyhedra stretching and bending modes, and the crystal structures are discussed. Y₂Si₂O₇ offers the possibility to study the relationship between structural and spectral changes in a chemically fixed system. Copyright © 2010 John Wiley & Sons, Ltd.     

Vibrational spectroscopy and DFT calculations of di‐amino acid peptides: α‐ and β‐N‐acetyl‐L‐Asp‐L‐Glu in the solid state

Experimental vibrational spectroscopic studies and density functional theory (DFT) calculations of the di‐amino acid peptide derivatives α‐ and β‐N‐acetyl‐L‐Asp‐L‐Glu have been undertaken. Raman and infrared spectra have been recorded for samples in the solid state. DFT simulations were conducted using the B3‐LYP correlation functional and the cc‐pVDZ basis set to determine energy minimized/geometry optimized structures (based on a single isolated molecule in the gaseous state). Normal coordinate calculations have provided vibrational assignments for fundamental modes, including their potential energy distributions. Significant differences are observed between α‐ and β‐N‐acetyl‐L‐Asp‐L‐Glu both in the computed structures and in the vibrational spectra. The combination of experimental and calculated spectra provide an insight into the structural and vibrational spectroscopic properties of di‐amino acid peptide derivatives. Copyright © 2009 John Wiley & Sons, Ltd.     

Synthesis,molecular structure,IR and Raman spectra as well as DFT chemical calculations for alkylamides of thiocyanoacetic acid

This paper reports on room‐temperature infrared (IR) and Raman studies and vibrational characteristics of amide and thiocyano groups of R‐NH‐CO‐CH₂‐SCN n‐alkylamides of thiocyanoacetic acid (R = C₈H₁₇, C₉H₁₉, C₁₂H₂₅ and C₁₄H₂₉). Their molecular structure has been proposed on the basis of optimization process. The experimental wavenumbers have been compared to those obtained from discrete Fourier transform (DFT) quantum chemical calculations performed with the use of B3LYP/6–31G(d,p) approximation. The role of the hydrogen bonds in the stabilization of the structure has been analyzed. It was found that the hydrogen bonding and strong dynamic interactions between the unit cell components are responsible for the deviation of several theoretical wavenumbers from the experimental ones. Copyright © 2009 John Wiley & Sons, Ltd.     

Substituent effect on structure and surface activity of N‐methylpyridinium salts studied by FT‐IR,FT‐RS,SERS and DFT calculations

The substituent effect on structure and surface activity of mono‐ and disubstituted N‐methylpyridinium salts was investigated by means of Raman, infrared and surface‐enhanced Raman spectroscopy (SERS). The significant differences observed in Raman and infrared spectra have been correlated with marker bands assigned to in‐plane and out‐of‐plane vibrations, respectively. This vibrational analysis, complemented by quantum chemical calculations (B3LYP/6‐311++G(d,p)) was a basis for investigation of the surface activity of the studied compounds. Significant differences in their SERS spectra related to the enhancement mechanism and adsorbate orientation have been observed and analyzed. Copyright © 2012 John Wiley & Sons, Ltd.     

Vibrational spectroscopic studies and DFT calculations of 4‐fluoro‐N‐(2‐hydroxy‐4‐nitrophenyl)benzamide

Fourier transform infrared (FT‐IR) and FT‐Raman spectra of 4‐fluoro‐N‐(2‐hydroxy‐4‐nitrophenyl)benzamide were recorded and analyzed. The vibrational wavenumbers and corresponding vibrational assignments were examined theoretically using the Gaussian03 set of quantum chemistry codes. The red‐shift of the NH‐stretching wavenumber in the infrared (IR) spectrum from the computed wavenumber indicates the weakening of the NH bond resulting in proton transfer to the neighboring oxygen atom. The simultaneous IR and Raman activation of the CO‐stretching mode gives the charge transfer interaction through a π‐conjugated path. Copyright © 2008 John Wiley & Sons, Ltd.     

Conformational analysis of 3‐methyl‐3‐silathiane and 3‐fluoro‐3‐methyl‐3‐silathiane

The conformational equilibria of 3‐methyl‐3‐silathiane 5 , 3‐fluoro‐3‐methyl‐3‐silathiane 6 and 1‐fluoro‐1‐methyl‐1‐silacyclohexane 7 have been studied using low temperature ¹³C NMR spectroscopy and theoretical calculations. The conformer ratio at 103 K was measured to be about 5 _ax: 5 _eq = 15:85, 6 _ax: 6 _eq = 50:50 and 7 _ax: 7 _eq = 25:75. The equatorial preference of the methyl group in 5 (0.35 kcal mol^?1) is much less than in 3‐methylthiane 9 (1.40 kcal mol^?1) but somewhat greater than in 1‐methyl‐1‐silacyclohexane 1 (0.23 kcal mol^?1). Compounds 5–7 have low barriers to ring inversion: 5.65 (ax → eq) and 6.0 (eq → ax) kcal mol^?1 ( 5 ), 4.6 ( 6 ), 5.1 (Me_ax → Me_eq) and 5.4 (Me_eq → Me_ax) kcal mol^?1 ( 7 ). Steric effects cannot explain the observed conformational preferences, like equal population of the two conformers of 6 , or different conformer ratio for 5 and 7 . Actually, by employing the NBO analysis, in particular, considering the second order perturbation energies, vicinal stereoelectronic interactions between the Si–X and adjacent C–H, C–S, and C–C bonds proved responsible. Copyright © 2010 John Wiley & Sons, Ltd.     

Spectroscopic and thermal studies on the inclusion of trans‐cinnamic acid and a number of its hydroxyl‐derivatives with α, β and γ‐cyclodextrins molecules

The inclusion compounds of α‐, β‐ and γ‐cyclodextrins (α‐CD, β‐CD and γ‐CD) with trans‐cinnamic acid (t‐CIA), 3‐hydroxy‐trans‐cinnamic acid (t‐3OHCIA), 4‐hydroxy‐trans‐cinnamic acid (t‐4OHCIA) and 3,4‐dihydroxy‐trans‐cinnamic acid (t‐3,4OHCIA) were prepared and characterized, in the solid state, by means of thermogravimetry and Raman spectroscopy. The effects of the inclusion process on the guest molecules and on the hydrogen bond interactions of the guest were studied by monitoring sensitive vibrational modes, such as CO, CC and ring C H stretching modes. By combining Raman and TG data with ab initio calculations and information from CSD database on similar compounds, inclusion geometries for the different compounds are proposed. The size of the host cavity and the maximization of host/guest hydrogen‐bonding contacts appear to be the main factors determining the inclusion geometries. Copyright © 2009 John Wiley & Sons, Ltd.     

FT‐IR,FT‐Raman and DFT calculations of 3‐{[(4‐fluorophenyl)methylene]amino}‐2‐phenylquinazolin‐4(3H)‐one

Fourier transform (FT)‐Raman and Fourier transform infrared (FT‐IR) spectra of 3‐{[(4‐fluorophenyl)methylene]amino}‐2‐phenylquinazolin‐4(3H)‐one were recorded and analyzed. The vibrational wavenumbers of the title compound were computed using the B3LYP/6‐31G* basis and compared with the experimental data. The prepared compound was identified by NMR and mass spectra. The simultaneous IR and Raman activation of the CO stretching mode shows a charge transfer interaction through a π‐conjugated path. The first hyperpolarizability and infrared intensities are reported. The assignments of the normal modes are done by potential energy distribution (PED) calculations. Copyright © 2008 John Wiley & Sons, Ltd.     

A multi‐addressable molecular switch based on a novel diarylethene with an imidazo [4,5‐f] [1,10] phenanthroline unit

A novel unsymmetrical diarylethene with an imidazo [4,5‐f] [1,10] phenanthroline unit has been synthesized, and its properties including photochromism and fluorescence have been investigated. It showed favorable photochromism and functioned as notable fluorescence switches by photoirradiation in both solution and a poly (methylmethacrylate) film. Moreover, the interaction between the phenanthroline unit of its closed‐ring isomer with trifluoroacetic acid caused a notable change in its absorption, accompanied by an evident color change from magenta to slateblue. Its fluorescence could be modulated by trifluoroacetic acid and triethylamine. By adding enough amount of trifluoroacetic acid in chloroform, its emission peak hypochromatic shifted from 501 nm to 456 nm, and the intensity increased significantly with a concomitant change of color from bright cyan to bright blue. However, its emission intensity decreased notably by 95% with a fluorescence color change from bright cyan to dark gray by the addition of triethylamine. Copyright © 2013 John Wiley & Sons, Ltd.     

Crystal structure and phonon modes of ilmenite‐type NaBiO3 investigated by Raman and infrared spectroscopies

NaBiO₃ is an ilmenite‐type compound presenting a trigonal structure. In this work, we have performed optical spectroscopic investigations using Raman scattering and infrared reflectivity for this material. By using group‐theory calculations, it was possible to determine the number of optically active modes. Fitting procedures besides Kramers–Kronig (KK) procedures lead to a consistent collection of phonon modes. The Raman spectrum showed nine active first‐order modes, while the infrared one revealed eight polar phonons, in good agreement with the theoretical predictions. The results allowed us to confirm the R3 (#148) space group for this compound, and to establish a set of active phonons not yet reported in the literature. Copyright © 2009 John Wiley & Sons, Ltd.     

FT‐IR,FT‐Raman and DFT calculations of the salicylanilide derivate 4‐chloro‐2‐(4‐bromophenylcarbamoyl)phenyl acetate

FT‐IR and FT‐Raman spectra of 4‐chloro‐2‐(4‐bromophenylcarbamoyl)phenyl acetate were recorded and analyzed. The vibrational wavenumbers and corresponding vibrational assignments were examined theoretically using the Gaussian03 set of quantum chemistry codes. The red shift of the NH stretching wavenumber in the infrared (IR) spectrum from the computed wavenumber indicates the weakening of the NH bond resulting in proton transfer to the neighbouring oxygen atom. The simultaneous IR and Raman activations of the CO stretching mode give the charge transfer interaction through a π‐conjugated path. Optimized geometrical parameters of the title compound are in agreement with similar reported structures. From the optimized structure, it is clear that the hydrogen bonding decreases the double bond character of CO bond and increases the double bond character of the C N bonds. The first hyperpolarizability, predicted infrared intensities and Raman activities are reported. The calculated first hyperpolarizability is comparable with the reported values of similar derivatives and is an attractive object for future studies of non‐linear optics. The assignments of the normal modes are done by potential energy distribution (PED) calculations. Copyright © 2009 John Wiley & Sons, Ltd.