Three-state molecular shuttles operated using acid/base stimuli with distinct outputs

This paper describes the acid/base-mediated three-state translational isomerization of two [2]rotaxanes, each containing N-alkylaniline and N,N-dialkylamine centers as binding sites for threaded dibenzo[24]crown-8 units. Under neutral conditions, the dialkylamine unit predominantly recognized the crown ether component through cooperative binding of a proton; when both amino units were protonated under acidic conditions, both translational isomers were generated; the addition of a strong base caused aniline-crown ether interactions to dominate. The three states of the [2]rotaxane featuring the 3,5-diphenylaniline terminus in its dumbbell-shaped component were accompanied by distinct absorptive outputs that were detectable using UV spectroscopy.     

The influence of macrocyclic polyether constitution upon ammonium ion/crown ether recognition processes

Secondary dialkylammonium (R2NH2+) ions are bound readily by dibenzo[24]crown-8 (DB24C8) to form threaded complexes, namely [2]pseudo-rotaxanes. The effect of replacing one or both of the catechol rings in DB24C8 with resorcinol rings upon the crown ether's ability to bind R2NH2+ ions has now been investigated. When only one aromatic ring is changed from catechol to resorcinol, a crown ether with a [25]crown-8 constitution is created-namely benzometaphenylene[25]crown-8 (BMP25C8). A [2]pseudorotaxane is formed in the solid state when BMP25C8 is co-crystallized with dibenzylammonium hexafluorophosphate, as evidenced by its X-ray crystal structure. Furthermore, this crown ether has been shown to bind R2NH2+ ions in solution, an observation which has been exploited in the synthesis of the first BMP25C8-containing [2]rotaxane. The methodology employed to generate this [2]rotaxane--the reaction of an amine with an isocyanate to form a urea--was tested initially on a system incorporating DB24C8 and was shown to work efficiently. Both [2]rotaxanes have been fully characterized by 1H and 13C NMR spectroscopies, FAB mass spectrometry and X-ray crystallography. Interestingly, the unsymmetrical nature of the dumbbell-shaped component in each of the two [2]rotaxanes renders each face of the encircling macrocyclic polyether diastereotopic, a feature that is apparent upon inspection of their 1H NMR spectra. The resonances associated with the diastereotopic protons on each face of the macrorings are well enough resolved to enable the faces of the crown ethers to be readily identified with respect to their protons by 1H NMR spectroscopy. Unambiguous assignments can be made as a result of the fact that the protons on each face of the macrocyclic polyether experience a unique set of through-space interactions, as evidenced by T-ROESY experiments. Additionally, the two-dimensional NMR analyses are in agreement with the X-ray crystallographic studies performed on these [2]rotaxanes, indicating that the crown ethers are located intimately around the NH2+ centers as expected. Replacement of both catechol rings in the DB24C8 constitution with resorcinol rings results in a crown ether with a [26]crown-8 constitution--namely bismetaphenylene[26]crown-8 (BMP26CS). All the evidence to date points to the fact that this further change in constitution results in a crown ether that does not bind R2NH2+ ions in either the solution or solid states.     

Rotaxanes and pseudorotaxanes with Fe-, Pd- and Pt-containing axles. Molecular motion in the solid state and aggregation in solution

This article reviews our recent studies on structure and properties of rotaxanes and pseudorotaxanes with Fe-, Pd- and Pt-containing complexes as the axle component. Electrochemical oxidation of ferrocenylmethylamine in the presence of a hydrogen radical precursor induces formal protonation of the amino group and produces a pseudorotaxane of the resulting ammonium species with a crown ether. Single crystals of the ferrocene-containing pseudorotaxane undergo a thermal crystalline phase transition accompanied by changes in the optical properties of the crystals. X-Ray crystallographic studies of the low- and high-temperature phases revealed different intermolecular interactions and orientations of the aromatic rings in the crystalline state depending on the temperature. End-capping of the ferrocene-containing [2]pseudorotaxane using a cross-metathesis reaction yields [2]rotaxane under mild conditions. A rotaxane having a platinum-carboxylate complex as its axle is converted into related organic and inorganic rotaxanes by partial dissociation of the Pt-O bond. An N-alkylbipyridinium forms [3]pseudorotaxane with alpha-cyclodextrin (alpha-CD), and it reacts with platinum and palladium complexes to form the corresponding [5]rotaxanes containing four alpha-cyclodextrin moieties. Complexes without alpha-CD components form micelles in aqueous solution, while the addition of alpha-CD causes degradation of the micelles and the formation of rotaxanes.     

Quantitative conformational study of redox-active [2]rotaxanes, part 2: Switching in flexible and rigid bistable [2]rotaxanes

Translational movement of the macrocycle in two structurally similar bistable [2]rotaxanes, which is induced by a four-step electrochemical process in solution, has been investigated by using a methodology developed in the preceding article (Chem. Eur. J. 2008, 14, 1107-1116). Both [2]rotaxanes contain a crown ether that can be accommodated by either of two interconnected viologen recognition sites. These sites are substantially different in terms of their affinity towards the crown ether and they possess considerably different electrochemical reduction potentials. The two [2]rotaxanes differ in the length and the rigidity of a bridge that links these sites. A combination of molecular mechanics modelling and NOE spectroscopy data provides information about the conformations of both [2]rotaxanes in the parent oxidation state when the crown ether exclusively populates the strong recognition site. To determine the population of the recognition sites at subsequent stages of reduction, a paramagnetic NMR technique and cyclic voltammetry were used. The key finding is that the flexibility of the connecting bridge element between the recognition sites interferes with shuttling of the crown ether in [2]rotaxanes. It can be demonstrated that the more flexible trimethylene bridge is folded, thus limiting the propensity of the crown ether to shuttle. Consequently, the crown ether populates the original site even in the second reduced state of the flexible [2]rotaxane. On the contrary, in the [2]rotaxane in which two viologen sites are connected by a larger and more rigid p-terphenylene bridge, the predominant location of the crown ether at the weak recognition site is achieved after just one single electron reduction.     

2]Rotaxanes containing pyridinium-phosphonium axles and 24-crown-8 ether wheels

A triethylphosphonium group attached to a pyridinium ethane moiety can be used as an axle for the self-assembly of [2]pseudorotaxanes and [2]rotaxanes. Although [2]pseudorotaxane formation is limited due to the bulk of the PR4+ group, [2]rotaxanes can be formed utilising 24-crown-8 ether, benzo-24-crown-8 ether and naphtho-24-crown-8 ether. The synthesis of these [2]rotaxanes and the X-ray structure of the [2]rotaxane containing a 24-crown-8 ether wheel are described. When the crown ether contains an aromatic group two possible conformational isomers exist; these are identified at low temperature by 1H and 31P NMR spectroscopy.     

Pillar[5]arene-based [3]rotaxanes: Convenient construction via multicomponent reaction and pH responsive self-assembly in water

Four pillar[5]arene based [3]rotaxanes(1-4) involving two 1,4-diethoxypillar[5]arene(DEP5) rings and a dumbbell-shaped component were successfully synthesized.The dumbbell-shape molecules contain one longer bridge,two triazole sites and two multicomponent stoppers.After threading DEP5 rings with linear guests(G1-G4) which contain two benzaldehyde units,the base catalyzed three-component reaction of dimedone,malononitrile and benzaldehyde was performed to construct the stoppers and connected the pseudorotaxanes with stoppers to generate 1-4.The structures of [3]rotaxanes and their self-assembly behaviors were characterized by ~1 H NMR,~(13)C NMR,NOESY,HR-ESI-MS,DLS and TEM technologies.We hope that pillar[5]arene based [3]rotaxanes may have potential applications in drug delivery systems and molecular devices.     

Kinetic versus thermodynamic control during the formation of [2]rotaxanes by a dynamic template-directed clipping process

A template-directed dynamic clipping procedure has generated a library of nine [2]rotaxanes that have been formed from three dialkylammonium salts-acting as the dumbbell-shaped components-and three dynamic, imino bond-containing, [24]crown-8-like macrocycles-acting as the ring-shaped components-which are themselves assembled from three dialdehydes and one diamine. The rates of formation of these [2]rotaxanes differ dramatically, from minutes to days depending on the choice of dialkylammonium ion and dialdehyde, as do their thermodynamic stabilities. Generally, [2]rotaxanes formed by using 2,6-diformylpyridine as the dialdehyde component, or bis(3,5-bis(trifluoromethyl)benzyl)ammonium hexafluorophosphate as the dumbbell-shaped component, assembled the most rapidly. Those rotaxanes containing this particular electron-deficient dumbbell-shaped unit, or 2,5-diformylfuran units in the macroring, were the most stable thermodynamically. The relative thermodynamic stabilities of all nine of the [2]rotaxanes were determined by competition experiments that were monitored by (1)H NMR spectroscopy.     

Branched [n]rotaxanes (n = 2-4) from multiple dibenzo-24-crown-8 ether wheels and 1,2-bis(4,4'-dipyridinium)ethane axles

To investigate the possibility of incorporating the 1,2-bis(pyridinium)ethane[subset or is implied by]24C8 [2]pseudorotaxane motif into dendrimer like macromolecules, a series of branched [n]rotaxanes were prepared employing multiple dibenzo-24-membered crown ether wheels with various aromatic core structures and the 1,2-bis(4,4'-dipyridinium)ethane axle. Yields of branched [2]-, [3]- and [4]rotaxanes were dependent on the size of the core and the relative proximity of the crown ethers arranged around the core unit.     

Post-assembly processing of [2]rotaxanes

The concept of using [2]rotaxanes that carry one or more surrogate stoppers which can subsequently be converted chemically into other structural units, resulting in the formation of new interlocked molecular compounds, is introduced and exemplified. Starting from simple NH2(+)-centered/crown-ether-based [2]rotaxanes, containing either one or two benzylic triphenylphosphonium stoppers, the well-known Wittig reaction has been employed to make, 1) other [2]rotaxanes, 2) higher order rotaxanes, 3) branched rotaxanes, and 4) molecular shuttles--all isolated as pure compounds, following catalytic hydrogenations of their carbon-carbon double bonds, obtained when aromatic aldehydes react with the ylides produced when the benzylic triphenylphosphonium derivatives are treated with strong base. The two starting [2]rotaxanes were characterized fully in solution and also in the solid state by X-ray crystallography. The new interlocked molecular compounds that result from carrying out post-assembly Wittig reactions on two [2]rotaxanes were characterized by (dynamic) 1H NMR spectroscopy. In the case of a molecular shuttle in which the crown ether component is dibenzo[24]-crown-8 (DB24C8), shuttling is slow on the 1H NMR timescale, even at high temperatures. However, when DB24C8 is replaced by benzometaphenylene[25]-crown-8 as the ring component in the molecular shuttle, the frequency of the shuttling is observed to be around 100 Hz in [D4]methanol at 63 degrees C.     

Quantitative conformational study of redox-active [2]rotaxanes, part 1: Methodology and application to a model [2]rotaxane

This paper reports a novel methodology for the conformational analysis of [2]rotaxanes. It combines NMR spectroscopic (COSY, NOESY and the recently reported paramagnetic line-broadening and suppression technique) and electrochemical techniques to enable a quantitative analysis of the co-conformations of interlocked molecules and the conformations of their components. This methodology was used to study a model [2]rotaxane in solution. This [2]rotaxane consists of an axle that incorporates an electron-poor, doubly positively charged viologen that threads an electron-rich crown ether. It has been shown that the axle of the [2]rotaxane in its dicationic state adopts a folded conformation in solution and the crown ether is localised at the viologen moiety. Following a one-electron reduction of viologen, the paramagnetic radical cation of the [2]rotaxane retains its folded conformation in solution. The data also demonstrate that in the radical cation the crown ether remains localised at the viologen, despite its reduced affinity for the singly reduced viologen. The combined quantitative NMR spectroscopic and electrochemical characterisation of the electromechanical function of the model [2]rotaxane in solution provides an important reference point for the study of switching in structurally related bistable [2]rotaxanes, which is the subject of the second part of this work.     

Redox-controllable amphiphilic [2]rotaxanes

With the fabrication of molecular electronic devices (MEDs) and the construction of nanoelectromechanical systems (NEMSs) as incentives, two constitutionally isomeric, redox-controllable [2]rotaxanes have been synthesized and characterized in solution. Therein, they both behave as near-perfect molecular switches, that is, to all intents and purposes, these two rotaxanes can be switched precisely by applying appropriate redox stimuli between two distinct chemomechanical states. Their dumbbell-shaped components are composed of polyether chains interrupted along their lengths by i) two pi-electron rich recognition sites-a tetrathiafulvalene (TTF) unit and a 1,5-dioxynaphthalene (DNP) moiety-with ii) a rigid terphenylene spacer placed between the two recognition sites, and then terminated by iii) a hydrophobic tetraarylmethane stopper at one end and a hydrophilic dendritic stopper at the other end of the dumbbells, thus conferring amphiphilicity upon these molecules. A template-directed protocol produces a means to introduce the tetracationic cyclophane, cyclobis(paraquat-p-phenylene) (CBPQT(4+)), which contains two pi-electron accepting bipyridinium units, mechanically interlocked around the dumbbell-shaped components. Both the TTF unit and the DNP moiety are potential stations for CBPQT(4+), since they can establish charge-transfer and hydrogen bonding interactions with the bipyridinium units of the cyclophane, thereby introducing bistability into the [2]rotaxanes. In both constitutional isomers, (1)H NMR and absorption spectroscopies, together with electrochemical investigations, reveal that the CBPQT(4+) ring is predominantly located on the TTF unit, leading to the existence of a single translational isomer (co-conformation) in both cases. In addition, a model [2]rotaxane, incorporating hydrophobic tetraarylmethane stoppers at both ends of its dumbbell-shaped component, has also been synthesized as a point of reference. Molecular synthetic approaches were used to construct convergently the dumbbell-shaped compounds by assembling progressively smaller building blocks in the shape of the rigid spacer, the TTF unit and the DNP moiety, and the hydrophobic and hydrophilic stoppers. The two amphiphilic bistable [2]rotaxanes are constitutional isomers in the sense that, in one constitution, the TTF unit is adjacent to the hydrophobic stopper, whereas in the other, it is next to the hydrophilic stopper. All three bistable [2]rotaxanes have been isolated as green solids. Electrospray and fast atom bombardment mass spectra support the gross structural assignments given to all three of these mechanically interlocked compounds. Their photophysical and electrochemical properties have been investigated in acetonitrile. The results obtained from these investigations confirm that, in all three [2]rotaxanes, i) the CBPQT(4+) cyclophane encircles the TTF unit, ii) the CBPQT(4+) cyclophane shuttles between the TTF and DNP stations upon electrochemical or chemical oxidation/reduction of the TTF unit, and iii) folded conformations are present in which the CBPQT(4+) cyclophane, while encircling the TTF unit, interacts through its pi-accepting bipyridinium exteriors with other pi-donating components of the dumbbells, especially those located within the stoppers.     

Five‐State Molecular Shuttling of a Pair of [2]Rotaxanes: Distinct Outputs in Response to Acid and Base Stimuli

In this study we synthesized two acid‐/base‐controllable [2]rotaxanes featuring aminodiazobenzene and aminocoumarin units, respectively, as chromophores and dibenzo[24]crown‐8 and dibenzo[25]crown‐8 units, respectively, as their macrocyclic components. Each [2]rotaxane contained N‐alkylarylamine (ammonium) and N,N‐dialkylamine (ammonium) centers as binding sites for their crown ether components. The absorption patterns of the chromophores were dependent on the position of the encircling macrocyclic component and the degree of protonation, with three distinct states (under acidic, neutral, and basic conditions) evident for each [2]rotaxane. The mixed [2]rotaxane system displayed stepwise and independent molecular shuttling behavior based on the degree of protonation of the amino groups in response to both the amount and strength of added acids or bases; as such, the system provided five different absorption signals as outputs that could be read using UV/Vis spectroscopy.     

Improbable Rotaxanes Constructed From Surrogate Malonate Rotaxanes as Encircled Methylene Synthons

We have developed a new approach for the synthesis of “improbable” rotaxanes by using malonate-centered rotaxanes as interlocked surrogate precursors. Here, the desired dumbbell-shaped structure can be assembled from two different, completely separate, portions, with the only residual structure introduced from the malonate surrogate being a methylene group. We have synthesized improbable [2]- and [3]rotaxanes with all-hydrocarbon dumbbell-shaped components to demonstrate the potential structural flexibility and scope of the guest species that can be interlocked when using this approach.     

Utilization of a Crown Ether/Amine‐Type Rotaxane as a Probe for the Versatile Detection of Anions and Acids by Thin‐Layer Chromatography

A crown ether/amine‐type [2]rotaxane was synthesized and utilized as a probe for the detection of acids and anions. The addition of acids to the amine‐type [2]rotaxane solution generated corresponding crown ether/ammonium‐type [2]rotaxanes, which were purified by silica gel column chromatography as ammonium salts. The isolated yields of the [2]rotaxanes, possessing a variety of anions, depended on the acidity and polarity of the counter anions. The behaviours of the ammonium‐type [2]rotaxanes on thin‐layer chromatography (TLC) silica gel reflected the properties of the counter anions. The treatment of the amine‐type [2]rotaxane with acids afforded the corresponding ammonium‐type [2]rotaxanes bearing several different anions. The ammonium‐type [2]rotaxanes behaved similarly to the purified [2]rotaxanes on the TLC silica gel. Furthermore, we succeeded in the analysis of anions using mixtures of the amine‐type [2]rotaxane and salts in an appropriate solvent. We demonstrated the detection of anions by the combination of TLC and the utilization of the [2]rotaxane probe.     

Linking [2]rotaxane wheels to create a new type of metal organic rotaxane framework

Three new [2]rotaxanes with aromatic nitrogen donors appended to the crown ether wheel have been synthesized and used as ligands to coordinate Cd(II) ions. One of these yields a new type of 2-periodic, metal organic rotaxane framework in which the wheel rather than the axle is used to link the metal nodes.     

Preparation and characterization of tetraaza[14]annulene and its nickel(ii) and copper(II) complexes with crown ether functionalities

Three new organic hosts are described that contain a tetraaza[14]annulene core to which two crown ether voids are attached. These hosts include a free base tetraaza[14]annulene and/or its complexes with benzo-15-crown-5 rings. The crown tetraaza[14]annulene is synthesized from tetraaza[14]annulene and 4′-chloroformylbenzo-15-crown-5. Its nickel(II) and copper(II) complexes are prepared in a similar manner as above. In solution the compounds do not tend to form aggregates. However, aggregation is affected by the presence of alkali-metal salts, which coordinate to the crowns. Li⁺ and Na⁺ cations with diameters that match the diameters of the crown ether rings form 1:2 host-guest complexes. Complexes with 2:2 host-guest stoichiometry are formed when the diameters of K⁺ and Cs⁺ cations exceed that of the crown ether rings. Nevertheless, it is weak for the present macrocycle and its complexes to be inclined to form dimers owing to the steric hindrance of the substituent groups and owing to restraining the rotation of the carbonyl bond connecting the crown ether group.     

Construction of Crown Ether‐Stoppering [3]Rotaxanes Based on N‐Hetero Crown Ether Host

Crown ether usually plays the role of macrocyclic host in supramolecular chemistry, but here the crown ether is also utilized as the stoppers in rotaxanes. In this work, we designed and synthesized two [3]rotaxanes containing four crown ether components by using an approach of template‐directed clipping reaction, of which, two crown ether components were employed as the macrocyclic hosts to assemble the mechanically interlocked framework while another two crown ether units located on the two ends of ammonium template acting as the stoppering groups of rotaxanes. Their self‐assembling process was monitored by the ¹H NMR and one of the single crystal structures of [3]rotaxane was obtained.     

Fluorescence Modulation in Tribranched Switchable [4]Rotaxanes

Two novel tribranched [4]rotaxanes with a 1,3,5‐triphenylene core and three rotaxane arms have been designed, synthesized, and characterized by ¹H and ¹³C NMR spectroscopies and HR‐ESI mass spectrometry. [4]Rotaxanes 1 and 2 each possess the same three‐armed skeleton. Each arm incorporates two distinguishable binding sites for a dibenzo[24]crown‐8 ring, namely a dibenzylammonium site and an N‐methyltriazolium site, and is terminated by a 4‐morpholino‐naphthalimide fluorophore as a stopper. [4]Rotaxane 1 has three di‐ferrocene‐functionalized dibenzo[24]crown‐8 rings whereas 2 has three simple dibenzo[24]crown‐8 rings interlocked with the thread component. Uniform shuttling motions of the three macrocycles in both 1 and 2 can be driven by external acid–base stimuli, which were confirmed by ¹H NMR spectroscopy. However, [4]rotaxanes 1 and 2 show distinct modes of fluorescence modulation in response to external acid–base stimuli. [4]Rotaxane 1 exhibits a remarkable fluorescence decrease in response to the addition of 1,8‐diazabicyclo[5.4.0]undec‐7‐ene (DBU) as a base, which can displace the ferrocene‐functionalized macrocycle from the dibenzylammonium station to the N‐methyltriazolium station. In contrast, the fluorescence intensity of [4]rotaxane 2 showed an enhancement with the addition of DBU. Time‐resolved fluorescence measurements have been performed. The different photoinduced electron‐transfer processes responsible for the fluorescence changes in the two molecular systems are discussed. Topological structures of this kind have significant potential for the design and construction of large and complex assemblies with controllable functions.     

Facile synthesis of rotaxanes through condensation reactions of DCC-[2]rotaxanes

[reaction: see text] In this Letter, we present an easy method for the synthesis of rotaxanes using a novel DCC-[2]rotaxane. The DCC-[2]rotaxane is composed of dibenzo-24-crown-8 ether, an amino acid tether, and di-tert-butyl phenyl rings as blocking groups. It is relatively stable and can be purified by column chromatography. A series of model rotaxanes were obtained in good yields by condensing the DCC-[2]rotaxanes with N-(2-aminoethyl)-3,5-di-tert-butylbenzylamide in acetonitrile and chloroform.     

Effect of Component Mobility on the Properties of Macromolecular [2]Rotaxanes

Macromolecular [2]rotaxanes comprising a polymer axle and crown ether wheel were synthesized to evaluate the effect of component mobility on the properties of the axle polymer, especially its crystallinity. Living ring‐opening polymerization of δ‐valerolactone with a pseudorotaxane initiator with a hydroxy group at the axle terminus was followed by end‐capping with a bulky isocyanate. This yielded macromolecular [2]rotaxanes (M2Rs) possessing polyester axles of varying molecular weights. The crystallinity of the axle polymers of two series of M2Rs, with either fixed and movable components, was evaluated by differential scanning calorimetry. The results revealed that the effect of component mobility was significant in the fixed and movable M2Rs with a certain axle length, thus suggesting that the properties of the axle polymer depend on the mobility of the polyrotaxane components.