Environmental metabolomics: new insights into earthworm ecotoxicity and contaminant bioavailability in soil

Environmental metabolomics is a growing and emerging sub-discipline of metabolomics. Studies with earthworms have progressed from the initial stages of simple contact exposure tests to detailed studies of earthworm responses in soil. Over the past decade, a variety of endogenous metabolites have been identified as potential biomarkers of contaminant exposure. Furthermore, metabolomic methods have delineated responses from sub-lethal exposure of earthworms to polycyclic aromatic hydrocarbons and metals in soil suggesting that environmental metabolomics may be used as a direct measure of contaminant bioavailability in soil. Environmental metabolomics has the potential to fill knowledge gaps related to earthworm toxicity and contaminant bioavailability. However, challenges with metabolite quantification and limited systems-level models of metabolic data require improvement before detailed models of “normal” responses can be developed and used routinely in assessment of contaminated sites. Nonetheless, environmental metabolomics is poised to improve our fundamental understanding of earthworm responses and toxicity to contaminants in soil. Figure Principal component analysis (PCA) scores plots of earthworm metabolic profiles measured by ¹H NMR spectroscopy after exposure to sub-lethal concentrations of phenanthrene in soil.

Chemistry, commentary, and community: discussion of “an examination of the vaporization enthalpies and vapor pressures of pyrazine, pyrimidine, pyridazine, and 1,3,5-triazine” by Lipkind and Chickos

Vaporization enthalpies for the isomeric diazines were discussed within the context of recent measurements and estimation techniques. It is suggested that pyridazine shows enigmatic behavior.

Food anaphylaxis

    Figure Avoidance is the primary measure in food allergy confirmed

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Encapsulating of single quantum dots into polymer particles

Single semiconductor quantum dots were embedded into polymer particles with diameters below 0.1 μm by an emulsion polymerization procedure or via a secondary dispersion approach. The photoluminescence properties of the nanocrystals are retained upon encapsulation, as demonstrated by fluorescence confocal microscopy.

Core-shell effects of functionalized oxide nanoparticles inside long-range meso-ordered spray-dried silica spheres

Core-shell and homogeneous distributions of functionalized cerium oxide nanoparticles within spray-dried mesostructured silica spheres are achieved by modification of synthesis parameters such as the templating agent and nanoparticle capping functions. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.

Do we need to rethink collaborative trials?

The currently recommended design of collaborative trials (interlaboratory method performance studies) is examined in relation to the usefulness of the resulting statistics. It is suggested that larger experiments, without duplicate analysis, would be more informative.

A novel Ce<Superscript>III</Superscript>-cyclam type complex and its redox chemistry in aqueous solutions

A new Ce^III complex was synthesized by mixing the ligand “dioxocyclam” with Ce^III ions at pH 8.0 and its redox properties were investigated.

Kinetics of substitution at [tris(3,5-dimethylpyrazolyl)-hydroborato]molybdenum nitrosyl dihalides by alcohols and by aniline

The kinetics of substitution by alcohols and by aniline at [tris(3,5-dimethylpyrazolyl)hydroborato]molybdenum nitrosyl dihalides in toluene solution at 298.2 K and at atmospheric pressure are reported and interpreted in terms of an associative mechanism.

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Core-shell structured electrode materials for lithium ion batteries

Recent progress in studies of several types of core-shell structured electrode materials, including TiO₂/C, Si/C, Si/SiO _x , LiCoO₂/C, and LiFePO₄/C nanocomposites, including details of their preparation and their electrochemical performance is briefly reviewed. Results clearly show that the coating shell can effectively prevent the aggregation of the nanosized cores, which are the electrochemically active materials. In addition, the diffusion coefficients of lithium ions can be increased, and the reversibility of lithium intercalation and deintercalation is improved. As a result, the cycling behavior is greatly improved. The reviewed results suggest that core-shell nanocomposites are a good starting point for further development of new promising electrode materials.

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Single-molecule spectroscopy of fluorescent proteins

The discovery and use of fluorescent proteins has revolutionized cellular biology. Despite the widespread use of visible fluorescent proteins as reporters and sensors in cellular environments the versatile photophysics of fluorescent proteins is still subject to intense research. Understanding the details of the photophysics of these reporters is essential for accurate interpretation of the biological and biochemical processes illuminated by fluorescent proteins. Some aspects of the complex photophysics of fluorescent proteins can only be observed and understood at the single-molecule level, which removes averaging inherent to ensemble studies. In this paper we review how single-molecule emission detection has helped understanding of the complex photophysics of fluorescent proteins.

A note on Michael Weisberg’s: challenges to the structural conception of chemical bonding

Michael Weisberg’s recent 2007 paper on the chemical bond makes the claim that the chemical notion of the covalent bond is in trouble. This note casts doubts on that claim.

The meaning of ‘concentration’

Terminology within a small laboratory community can be informal without danger of misunderstanding, but communication with a wider audience and not least in publications, needs unequivocal terms for defined concepts. As an example, the many meanings of “concentration” are explored to present a systematic nomenclature, including a concept diagram.

Stress generation and fracture in lithium insertion materials

A mathematical model that calculates volume expansion and contraction and concentration and stress profiles during lithium insertion into and extraction from a spherical particle of electrode material has been developed. The maximum stress in the particle has been determined as a function of dimensionless current, which includes the charge rate, particle size, and diffusion coefficient. The effects of pressure-driven diffusion and nonideal interactions between the lithium and host material have also been described. The model predicts that carbonaceous particles will fracture in high-power applications such as hybrid-electric vehicle batteries.

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Protein microarrays for diagnostic assays

Protein microarray technology has enormous potential for in vitro diagnostics (IVD). Miniaturized parallelized immunoassays are perfectly suited to generating a maximum of diagnostically relevant information from minute amounts of sample whilst only requiring small amounts of reagent. Protein microarrays have become well-established research tools in basic and applied research and the first products are already on the market. This article reviews the current state of protein microarrays and discusses developments and future demands relating to protein arrays in their role as multiplexed immunoassays in the field of diagnostics.

Electrochemical studies of bi- and polymetallic complexes featuring acetylide based bridging ligands

Acetylide-based bridging ligands have been widely used in the preparation of complexes that display a degree of electronic interaction between metal-based redox groups located at the ligand termini. The electrochemical response of these systems has been selectively reviewed, with a focus on the variation in properties that accompany changes in the structure of the bridging ligand and the nature of the metal groups.

Preparation, structural, and optical features of two-dimensional cross-linked DNA/gold-nanoparticle conjugates

The formation and the optical features of two-dimensional aggregates formed by DNA-directed immobilization and cross-linking of bifunctional DNA–gold nanoparticles at flat gold substrates are analyzed. The samples are structurally characterized by atomic force microscopy to evaluate the particle size, the particle densities, and the degree of aggregation. The optical characteristics determined by UV/visible measurements are correlated with the structural features observed.

Estimation of electrochemical quartz crystal microbalance frequencies from cyclic voltammetric data:—underpotential deposition of metals as an illustration

The estimation of electrochemical quartz crystal microbalance (EQCM) frequencies from a given cyclic voltammetric data is analysed using underpotential deposition (UPD) of metals as an illustrative process. The crucial role played by the surface roughness of electrodes and electrosorption valency of the depositing species is pointed out. The computed EQCM frequency shifts for the UPD of Cd and Tl on polycrystalline Ag electrodes are in satisfactory agreement with the experimental data.

Chemistry,commentary and community: Discussion of “The NaDyBr<Subscript>4</Subscript> complex: its molecular structure and thermodynamic properties” by Varga and Hargittai

The molecular geometries, relative stabilities, binding energies, and dissociation energies of NaDyBr₄ and its molecular ion are discussed. Both the bidentate and tridentate isomers are stable for the neutral species, while only the bidentate form is stable for NaDyBr₄ ⁺.

Pt–Ru electrocatalysts for fuel cells: a representative review

Three periods of Pt–Ru research are considered step-by-step: the initial period after discovery (1963–1970); observation and classification of basic tendencies (like the effects of composition, segregation, structural features on the activity; up to 1990); nanostructural studies and molecular level consideration of electrocatalytic phenomena in combination with advanced applied studies of materials, mechanistic, and applied aspects (after 1990). The main idea of this review is to balance various aspects of Pt–Ru electrochemistry related to material science and electrocatalysis as well as to remember the early basic results being of importance for future understanding of Pt–Ru functional properties. Dedicated to Professor Teresa Iwasita, as a token of her remarkable contribution to electrocatalysis.

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Can auditing save us from a quality disaster?

Auditing of clinical laboratories is a recognized component of quality assurance practice. National regulatory standards, such as the U.S. Clinical Laboratory Improvement Amendments (CLIA), and international voluntary standards, such as those promulgated by the International Organization for Standardization (ISO), are used in the auditing. Professional organizations have long recognized the benefit of on-site, peer review. However, recent events in the U.S. question the validity of current auditing practices. To be effective, auditing must be part of a continuous quality improvement system and a key component of laboratory leadership.