A vacuum ultraviolet pulsed field ionization-photoelectron study of cyanogen cation in the energy range of 13.2-15.9 eV

The vacuum ultraviolet pulsed field ionization-photoelectron and photoionization efficiency spectra of NCCN have been measured in the energy region of 13.25-17.75 eV. The analyses of these spectra have provided accurate ionization energy (IE) values of 13.371+/-0.001, 14.529+/-0.001, 14.770+/-0.001, and 15.516+/-0.001 eV for the formation of NCCN(+) in the X(2)Pi(g), A(2)Sigma(g) (+), B(2)Sigma(u) (+), and C(2)Pi(u) states, respectively. The ionization energy [NCCN(+)(B(2)Sigma(u) (+))] value determined here indicates that the origin of the NCCN(+)(B(2)Sigma(u) (+)) state lies lower in energy by 25 meV than previously reported. A set of spectroscopic parameters for NCCN(+)(X(2)Pi(g)) has been calculated using high level ab initio calculations. The experimental spectra are found to consist of ionizing transitions populating the vibronic levels of NCCN(+), which consist of pure vibronic progressions, combination modes involving the symmetric CN stretch, the CC stretch, and even quanta of the antisymmetric CN stretch, and bending vibrations. These bands are identified with the guidance of the present ab initio calculations.     

Infrared spectroscopy and photochemistry of NCCN+ and CNCN+ trapped in solid neon

When a Ne:NCCN sample is codeposited at 4.3 K with neon atoms that have been excited in a microwave discharge, the infrared and near infrared spectra of the resulting deposit include a prominent peak at 1799.5 cm-1, previously assigned to nu3 of NCCN+, and several new absorptions at higher frequencies which are contributed by combination bands of ground-state NCCN+. The exposure of the deposit to near infrared and red light results in the appearance of two new absorptions which are attributed to CNCN+. The reverse isomerization occurs when the sample is exposed to near ultraviolet radiation, but the two new absorptions are regenerated upon subsequent irradiation with near infrared and red light.     

Structure, spectrum and decomposition of the doubly charged ion C2N2++

The electronic structure and fragmentation of the cyanogen dication formed by double photoionisation of the neutral NCCN molecule, are investigated by means of time of flight photoelectron-photoelectron coincidence (TOF-PEPECO) and photoelectron-photoion-photoion coincidence (PEPIPICO) techniques. Large scale ab initio computations at the cc-pVDZ/RCCSD(T) and cc-pVQZ/CASSCF levels of theory are performed in order to provide detailed structures, harmonic wavenumbers, vertical excitation energies and unimolecular decay pathways of the NCCN(++) and CNCN(++) isomers. Both theoretical and experimental data show that the NCCN(++) dication is metastable; it converts rapidly into the CNCN(++) most stable isomer for internal energies above 2 eV. Multi-step dissociation pathways are proposed. The dominant production of ions from unsymmetrical fragmentations is rather unexpected and is explained by rapid rearrangement to the CNCN(++) isomer.     

Ab initio vibration—rotation coupling constants and the equilibrium geometries of NCCN and CNCN

The equilibrium geometries of NCCN and CNCN were calculated from experimental ground-state rotational constants and ab initio values for the vibration—rotation coupling constants. For NCCN, R_1e(NC) = 1.1578(5) Å and R_2e(CC) = 1.3839(5) Å were obtained, where estimated error bars are given in parentheses. The calculated equilibrium bond lengths of CNCN are R_1e(CN) = 1.1813(5) Å, R_2e(NC) = 1.3116(5) Å and R_3e(CN) = 1.1581(5) Å. Ground-state rotational and centrifugal distortion constants are predicted with high accuracy for various isotopomers of NCCN.     

Theoretical study of the N-H…O red-shifted and blue-shifted hydrogen bonds

Theoretical calculations are performed to study the nature of the hydrogen bonds in complexes HCHO…HNO, HCOOH…HNO, HCHO…NH3, HCOOH…NH3, HCHO…NH2F and HCOOH…NH2F. The geometric structures and vibrational frequencies of these six complexes at the MP2/6-31+G(d,p), MP2/6-311++G(d,p), B3LYP/6-31+G(d,p) and B3LYP/6-311++G(d,p) levels are calculated by standard and counterpoise-corrected methods, respectively. The results indicate that in complexes HCHO…HNO and HCOOH…HNO the N-H bond is strongly contracted and N-H…O blue-shifted hydrogen bonds are observed. While in complexes HCHO…NH3, HCOOH…NH3, HCHO…NH2F and HCOOH…NH2F, the N-H bond is elongated and N-H…O red-shifted hydrogen bonds are found. From the natural bond orbital analysis it can be seen that the X-H bond length in the X-H…Y hydrogen bond is controlled by a balance of four main factors in the opposite directions: hyperconjugation, electron density redistribution, rehybridization and structural reorganization. Among them hyperconjugation has the effect of elongating the X-H bond, and the other three factors belong to the bond shortening effects. In complexes HCHO…HNO and HCOOH…HNO, the shortening effects dominate which lead to the blue shift of the N-H stretching frequencies. In complexes HCHO…NH3, HCOOH…NH3, HCHO…NH2F and HCOOH…NH2F where elongating effects are dominant, the N-H…O hydrogen bonds are red-shifted.     

Reaction mechanism of the CCN radical with nitric oxide

To investigate the possibility of the carbyne radical CCN in removal of nitric oxide, a detailed computational study is performed at the Gaussian-3//B3LYP/6-31G(d) level on the CCN + NO reaction by constructing the singlet and triplet electronic state [C(2)N(2)O] potential energy surfaces (PESs). The barrierless formation of the chain-like isomers NCCNO (singlet at -106.5, triplet cis at -48.2 and triplet trans at -47.6 kcal/mol) is the most favorable entrance attack on both singlet and triplet PESs. Subsequently, the singlet NCCNO takes an O-transfer to form the branched intermediate singlet NCC(O)N (-85.6), which can lead to the fragments CN + NCO (-51.2) via the intermediate singlet NCOCN (-120.3). The simpler evolution of the triplet NCCNO is the direct N-O rupture to form the weakly bound complex triplet NCCN...O (-56.2) before the final fragmentation to NCCN + (3)O (-53.5). However, the lower lying products (3)NCN + CO (-105.6) and (3)CNN + CO (-74.6) are kinetically much less competitive. All the involved transition states for generation of CN + NCO and NCCN + (3)O lie much lower than the reactants. Thus, the novel reaction CCN + NO can proceed effectively even at low temperatures and is expected to play a role in both combustion and interstellar processes. Significant differences are found on the singlet PES between the CCN + NO and CH + NO reaction mechanisms.     

Rapid and accurate evaluation of the binding energies and the individual N-H···O=C, N-H···N, C-H···O=C, and C-H···N interaction energies for hydrogen-bonded peptide-base complexes

The binding energies of thirty-six hydrogen-bonded peptide-base complexes, including the peptide backbone-ase complexes and amino acid side chain-base complexes, are evaluated using the analytic potential energy function established in our lab recently and compared with those obtained from MP2, AMBER99, OPLSAA/L, and CHARMM27 calculations. The comparison indicates that the analytic potential energy function yields the binding energies for these complexes as reasonable as MP2 does, much better than the force fields do. The individual N H…O=C, N H…N, C H…O=C, and C H…N attractive interaction energies and C=O…O=C, N H…H N, C H…H N, and C H…H C repulsive interaction energies, which cannot be easily obtained from ab initio calculations, are calculated using the dipole-dipole interaction term of the analytic potential energy function. The individual N H…O=C, C H…O=C, C H…N attractive interactions are about 5.3±1.8, 1.2±0.4, and 0.8 kcal/mol, respectively, the individual N H … N could be as strong as about 8.1 kcal/mol or as weak as 1.0 kcal/mol, while the individual C=O…O=C, N H…H N, C H…H N, and C H…H C repulsive interactions are about 1.8±1.1, 1.7±0.6, 0.6±0.3, and 0.35±0.15 kcal/mol. These data are helpful for the rational design of new strategies for molecular recognition or supramolecular assemblies.     

Measurement of multiple psi torsion angles in uniformly 13C,15N-labeled alpha-spectrin SH3 domain using 3D 15N-13C-13C-15N MAS dipolar-chemical shift correlation spectroscopy

We demonstrate the simultaneous measurement of several backbone torsion angles psi in the uniformly (13)C,(15)N-labeled alpha-Spectrin SH3 domain using two different 3D 15N-13C-13C-15N dipolar-chemical shift magic-angle spinning (MAS) NMR experiments. The first NCCN experiment utilizes double quantum (DQ) spectroscopy combined with the INADEQUATE type 13C-13C chemical shift correlation. The decay of the DQ coherences formed between 13C'(i) and 13C(alphai) spin pairs is determined by the "correlated" dipolar field due to 15N(i)-13C(alphai) and 13C'(i)-15N(i+1) dipolar couplings and is particularly sensitive to variations of the torsion angle in the regime |psi| > 140 degrees. However, the ability of this experiment to constrain multiple psi-torsion angles is limited by the resolution of the 13C(alpha)-(13)CO correlation spectrum. This problem is partially addressed in the second approach described here, which is an NCOCA NCCN experiment. In this case the resolution is enhanced by the superior spectral dispersion of the 15N resonances present in the 15N(i+1)-13C(alphai) part of the NCOCA chemical shift correlation spectrum. For the case of the 62-residue alpha-spectrin SH3 domain, we determined 13 psi angle constraints with the INADEQUATE NCCN experiment and 22 psi constraints were measured in the NCOCA NCCN experiment.     

Dissociation and recombination in the photochemical decay of carbonyl cyanide CO(CN)2 in cryogenic matrixes

The photochemistry of CO(CN)2 in cryogenic matrixes has been investigated employing pulsed laser excitation at 193 nm. During irradiation, the parent molecule, the intermediate, and the final photoproducts were monitored by IR spectroscopy. Four new species were identified including the isocyano isomer of the parent NCC(O)NC, cyanogen NCCN, isocyanogen CNCN, and CO according to spectroscopic features and ab initio calculations. After prolonged irradiation, the only remaining species were CO and the two isomers NCCN and CNCN. A reaction scheme is proposed which is in agreement with the first dissociation step being a branching of the decay path into the radical channel to CN+OCCN and the molecular channel to CO+(CN)2. The caged radicals of the former reaction either recombine to the parent molecule and its isomer which are both photolyzed again or they react directly to the stable and final products.     

OCS,CO2,N2O与烯、炔烃之间π…π作用的电子密度拓扑研究

采用MP2/aug-cc-pVDZ方法对氧硫化碳(OCS)、二氧化碳(CO2)、一氧化二氮(N2O)与乙烯(C2H4)、乙炔(C2H2)、2-丁炔(C4H6)之间形成的平行构型复合物中的分子间相互作用进行了理论研究.复合物的相互作用能按照B…C2H4B…C2H2>B…C4H6(B=OCS,CO2,N2O)的顺序依次减小.采用电子密度拓扑分析理论方法,讨论了复合物中π…π作用的成键特性.电子密度拓扑分析表明复合物中形成了弱的分子间相互作用,且以静电作用为主;π电子密度分子图与全电子密度分子图中键径方向是一致的,说明π…π作用在本文所讨论的体系中起着很重要的作用.NBO分析表明净电荷迁移从电子给体C2H4,C2H2,C4H6到电子受体OCS,CO2,N2O,迁移数按照B…C2H4相似文献   

The chloro-substituent as a steering group: A comparative study of non-bonded interactions and hydrogen bonding in crystalline chloro-aromatics

Distinctive patterns of C…C, Cl…Cl and C…Cl non-bonded short contacts are obtained for 4 Å short axis β-structures and for non-β-structures in a series of polychloro-aromatics, phenols and anilines. The directions of the shortest Cl…Cl and C…C contacts provide an insight into the role of the chloro-substituent as a steering group in the crystal engineering of β-structures.     

Potential of hydrogen bond in water. Comparison of the theory with vibrational spectra and results of molecular dynamics simulations

Potential of hydrogen bond is the function which relates its energy to geometrical parameters of hydrogen bridge: its length R(O…O) and angles between direction O…O and OH group [φ (H-O…O)] and/or lone pair of proton accepting oxygen atom [χ(-O…O)]. Previously we have suggested an approach to design such potentials based on the approximate numerical solution of a reverse problem of the spectrum band shape in the frames of the fluctuation theory of hydrogen bonding. In the given work this method is applied to construction of the two-parameter potentials that depend on parameters {R(O…O), φ (H-O…O} or {φ (H-O…O), χ (-O…O)}. Using them, the spectra of OH vibrations of HOD molecules in a liquid phase are calculated theoretically in good agreement with experiment in the temperature range up to 200 °C. Distributions of angles P(φ, T), P(χ, T), and energies P(E) are calculated also. The same distributions and spectra are independently calculated on the basis of the geometrical parameters of the hydrogen bridges obtained from molecular dynamics models of water. The shapes of the spectral contours and their temperature evolution calculated for computer models turned out to be similar to experimental ones only for the potential that includes the length of H-bond R(O…O).     

Structure of proton disolvates formed in the acid hydrolysis of ethyl formate and methyl acetate

By the density functional method (B3LYP/6-31++G(d,p)) optimal structures of proton hetero and homo disolvates involving water molecules, ethyl formate, methyl acetate and products of their hydrolysis are calculated. The data on the structure of these ions and the strength of their H bonds are analyzed together with the results of a similar calculation previously performed for methyl formate. It is shown that in proton solvation by two molecules present in the solution during the hydrolysis of ethyl formate, methyl acetate, and methyl formate stable (X…H…X)⁺ or (X…H…Y)⁺ particles form. Structural and energy parameters of their O…H…O bridges obey the same regularities and are mainly determined by a difference in the proton affinity of X and Y molecules. Calculation results are compared to the data of a number of experimental studies of the acid hydrolysis of esters.     

Structure effect of TsDPEN derivatives on enantioselectivity of asymmetric transfer hydrogenation

TsDPEN derivative (3,3′,5,5′-TMTsDPEN) was synthesized and applied in asymmetric transfer hydrogenation of ketones. The influence of chiral ligands’ NCCN dihedral angles to the enantioselectivities of the reaction was discussed.     

Substrate-directed stereoselectivity in vicinal diamine-catalyzed synthesis of warfarin

[Structure: see text] A new mechanism involving a diimine intermediate is proposed for vicinal diamine-catalyzed synthesis of warfarin. Decreasing the NCCN dihedral angle by varying the diamine results in an increase in the enantioselectivity of warfarin synthesis.     

N–H(N)…S Bonding in Tetrahedral [Zn(NCS)2L]0 Complexes (L = MexH2–xN(CH2)2NH2–yMey,x, y = 0 – 2)

The crystal structures of uncharged tetrahedral dithiocyanato zinc complexes with N-methylated ethylenediamines have been determined with a view to a study of intermolecular hydrogen-bonding interactions in these compounds. It is found that the H(N) hydrogen atoms are exhaustively engaged in N–H(N) … S bonds. The majority of these bonds are branched (bifurcated or trifurcated), and the hydrogen-bond systems they form all contain one of the two characteristic primitive core motifs: either a discrete centrosymmetric […S…H…]₂ dimer or an infinite […S…H…]_∞ helix about a 2₁ or pseudo-2₁ axis. The hydrogen bonding is analyzed in detail, with particular attention to the existence of correlations between the N–H(N)–S angles and the H(N) … S distances as well as between the corresponding N–H(N)–S/H(N)…S pairs in the bifurcated N–H(N)…2 S bonds.     

Supramolecular Assemblies of Sulfur- and Selenium- Containing Expanded Porphyrins Mediated Through Noncovalent Interactions

Abstract

Various supramolecular assemblies based on expanded porphyrins building blocks containing sulfur and/or selenium in the core, formed through multiple non-covalent hydrogen bonding interactions are highlighted. Specifically, modified expanded porphyrins such as 22 π sapphyrins, 26 π rubyrins, and 34 π octaphyrins self assemble in solid state through C–H…O, C–H…N, C–H…S, C–H…Se, C–H…π, and C–H…Cl interactions to form dimeric, oligomeric, and three dimensional networks. Furthermore, the supramolecular networks promoted by trapped solvent molecules such as nitrobenzene and bound anions such as chloride or trifluoroacetate through noncovalent interactions will be discussed.     

Recrossings and transition-state theory

When classical trajectory calculations are run on the two isomerization reactions NCCN <==> NCNC and CH3CN right harpoon over left harpoon CH3NC over a long period of time, up to ca. 0.2 micros each, one finds many more recrossings than actual reactive events. In these calculations a "recrossing" is defined as passage over the potential barrier separating the two species followed by return to the original side within 0.2 ps. For the C2N2 case there are about twice as many crossings of the barrier as there are genuine reactive events, and for CH3CN, there are about 10 times as many. Long-term mean residence times, tau(infinity)CN and tau(infinity)NC, in reactant and product wells are compared with the corresponding mean first passage times, tau1(CN) and tau1(NC), the latter found by terminating the trajectories at the first crossing of the barrier. For the NCCN <==> NCNC reaction, except at the lowest energies, the mean residence times are exactly twice the mean first passage times, implying that the transition-state theory transmission coefficient, as traditionally defined, should be kappa = 0.5.     

Cooperativity of conventional and unconventional hydrogen bonds involving imidazole

Correlated ab initio calculations are used to investigate the cooperativity of H‐bonds between imidazole and a pair of water molecules. H‐bonds comprise not only the conventional NH … O and OH … N types, but also CH … O and OH … φ (wherein a proton is donated to the delocalized π cloud lying above the aromatic ring). Conventional and OH … φ H‐bonds obey the normal principles of cooperativity, wherein these bonds are strengthened when a central molecule serves simultaneously as both proton donor and acceptor. In contrast, CH … O bonds do not appear to be amenable to such positive cooperativity. When placed in a polarizable medium, all H‐bonds weaken as the dielectric constant of the solvent grows. The qualitative aspects of the cooperativity are not affected by the medium, although some weakening is observed. Calculations also consider the effects of cooperativity on other aspects of the complexes, including the intermolecular distance, the effect on the covalent X‐H bond length, and IR and NMR spectral data. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2006