Molecular recognition thermodynamics and structural elucidation of interactions between steroids and bridged bis(beta-cyclodextrin)s

A series of bridged bis(beta-cyclodextrin(CD))s (2-7) were synthesized, i.e., bridged bis(beta-CD)s 2 and 3 bearing binaphthyl or biquinoline tethers and bridged bis(beta-CD)s 4-7 possessing dithiobis(benzoyl) tether, and their complex stability constants (KS), enthalpy (DeltaH degrees), and entropy changes (DeltaS degrees) for the 1:2 inclusion complexation with representative steroids, deoxycholate, cholate, glycocholate, and taurocholate, have been determined in an aqueous phosphate buffer solution of pH 7.20 at 298.15 K by means of titration microcalorimetry. The original conformations of bridged bis(beta-cyclodextrin)s were investigated by circular dichroism and 1H ROESY spectroscopy. Structures of the inclusion complexes between steroids and bridged bis(beta-CD)s in solution were elucidated by 2D NMR experiments, indicating that anionic groups of two steroid molecules penetrate, respectively, into the two hydrophobic CD cavities in one 6,6'-bridged bis(beta-CD) molecule from the secondary rim to give a 1:2 binding mode upon inclusion complexation. The results obtained from titration microcalorimetry and 2D NMR experiments jointly demonstrate that bridged bis(beta-CD)s 2, 3 and 5-7 tethered by protonated amino group possessing different substituted groups can enhance not only the molecular binding ability toward steroids by electrostatic interaction but also molecular selectivity. Thermodynamically, the resulting 1:2 bis(beta-CD)-steroid complexes are formed by an enthalpy-driven process, accompanied by smaller entropy loss. The increased complex stability mainly results from enthalpy gain, accompanied by large conformational change and extensive desolvation effects for the 1:2 inclusion complexation between bis(beta-CD)s and steroids.     

Mechanism of inner-sphere electron transfer via charge-transfer (precursor) complexes. Redox energetics of aromatic donors with the nitrosonium acceptor

Spontaneous formation of colored (1:1) complexes of various aromatic donors (ArH) with the nitrosonium acceptor (NO+) is accompanied by the appearance of two new (charge-transfer) absorption bands in the UV-vis spectrum. IR spectral and X-ray crystallographic analyses of the [ArH,NO+] complexes reveal their inner-sphere character by the ArH/NO+ separation that is substantially less than the van der Waals contact and by the significant enlargement of the aromatic chromophore. The reversible interchange between such an inner-sphere complex [ArH,NO+] and the redox product (ArH+.+ NO.) is quantitatively assessed for the first time to establish it as the critical intermediate in the overall electron-transfer process. Theoretical formulation of the NO+ binding to ArH is examined by LCAO-MO methodology sufficient to allow the unambiguous assignment of the pair of diagnostic (UV-vis) spectral bands. The MO treatment also provides quantitative insight into the high degree of charge-transfer extant in these inner-sphere complexes as a function of the HOMO-LUMO gap for the donor/acceptor pair. The relative stabilization of [ArH,NO+] is traced directly to the variation in the electronic coupling element H(AB), which is found to be substantially larger than the reorganization energy (lambda/2). In Sutin's development of Marcus-Hush theory, this inequality characterizes a completely delocalized Class III complex (which occupies a single potential well) according to the Robin-Day classification. The mechanistic relevance of such an unusual (precursor) complex to the inner-sphere mechanism for organic electron transfer is discussed.     

Cadmium complexation by aspartate. NMR studies and crystal structure of polymeric Cd(AspH)NO3

Two cadmium compounds containing the aspartate ligand are described, with compositions Cd(AspH)NO₃ and Cd(Asp). The crystal structure of the first shows it is a two dimensional polymer in which each cadmium is coordinated to seven oxygen atoms, four from carboxylates and three from the nitrate moiety which acts both as a chelate and as a bridging ligand. For Cd(Asp), ¹¹¹Cd NMR studies suggests the presence of CdNH₂ interaction.     

Kinetics and thermodynamics of copper(II) binding to apoazurin

The binding of copper(II) to apoazurin has been probed by isothermal titration calorimetry in cholamine buffer at pH 7.0. The standard enthalpy change was determined to be -10.0 +/- 1.4 kcal/mol. Each calorimetric trace reveals an initial exothermic phase followed by an endothermic phase. The calorimetric data could be fit to a kinetic model involving a bimolecular combination of copper(II) and apoazurin in an exothermic process (k = 2 +/-1 x 103 M-1 s-1, DeltaH degrees = -19 +/- 3 kcal/mol) to form an intermediate that spontaneously converts to Cu(II)-azurin in an endothermic process (k = 0.024 +/- 0.01 s-1, DeltaH degrees = +9 +/- 3 kcal/mol). These data suggest that copper(II) first combines with apoazurin in an irreversible process to form an intermediate that converts to copper(II)-azurin in a process driven by the release of water. The overall standard free energy of copper(II) binding to apoazurin is estimated to be -18.8 kcal/mol.     

An efficient optical resolution of nitrogen-centered chiral β-hydroxy-tetraalkylammonium salts via complexation with (R)-BINOL

The optical resolution of nitrogen-centered chiral β-hydroxy-tetraalkylammonium bromides is demonstrated by using chiral BINOL as a complexing agent. Determination of the enantiopurities and absolute configurations of the resolved N-chiral tetraalkylammonium salts are described.     

Effect of secondary structure on the thermodynamics and kinetics of PNA hybridization to DNA hairpins.

The binding of a series of PNA and DNA probes to a group of unusually stable DNA hairpins of the tetraloop motif has been observed using absorbance hypochromicity (ABS), circular dichroism (CD), and a colorimetric assay for PNA/DNA duplex detection. These results indicate that both stable PNA-DNA and DNA-DNA duplexes can be formed with these target hairpins, even when the melting temperatures for the resulting duplexes are up to 50 degrees C lower than that of the hairpin target. Both hairpin/single-stranded and hairpin/hairpin interactions are considered in the scope of these studies. Secondary structures in both target and probe molecules are shown to depress the melting temperatures and free energies of the probe-target duplexes. Kinetic analysis of hybridization yields reaction rates that are up to 160-fold slower than hybridization between two unstructured strands. The thermodynamic and kinetic obstacles to hybridization imposed by both target and probe secondary structure are significant concerns for the continued development of antisense agents and especially diagnostic probes.     

Molecular recognition studies on supramolecular systems (XXIV)——Conformations and complexation abilities of chemically modified cyclodextrins in aqueous solution

Circular dichroism spectral and fluorescence decay methods have been employed to determine the conformations of mono[6-(p-tolylseleno)-6-deoxy]-p-CD(1), mono(6-anilino-6-deoxy) β -CD (2) and mono[6-(L-tryptophan)-6-deoxy]-β-CD (3) in phosphate buffer solution (pH 7.2, 0.1 mol dm-3) at 298.15 K. The results indicate that compounds 2 and 3 formed self-inclusion complexes in aqueous buffer solution, while the substituent of compound 1 was not included into cyclodextrin cavity at all. Furthermore, the complex stability constant (logKs) and Gibbs free energy change (-ΔG° ) of these three cylcodextrin derivatives with several cycloalkanols have been determined by circular dichroism spectral titration in phosphate buffer solution at 298.15 K. It is found that the location of the substituent affects the stability of host-guest complex in aqueous solution.     

Effect of beta-cyclodextrin charge type on the molecular recognition thermodynamics of reactions with (ferrocenylmethyl)dimethylaminium derivatives

Complex stability constants (KS), standard molar enthalpic changes (DeltaH degrees ), and entropic changes (TDeltaS degrees ) for the inclusion complexations of native beta-cyclodextrin (1) and two oppositely charged beta-cyclodextrins, i.e., mono(6-amino-6-deoxy)- beta-cyclodextrin (2) and mono[6-O-6-(4-carboxylphenyl)]- beta-cyclodextrin (3), with two (ferrocenylmethyl)dimethylaminium derivatives, i.e., FC4+Br(-) and FC8+Br(-), were determined at 25 degrees C in aqueous phosphate buffer solution (pH 7.20) by means of isothermal titration microcalorimetry (ITC). Cyclic voltammetry studies showed that the ferrocene groups of the guests were included in the beta-cyclodextrin cavity to form host-guest complexes. As compared with neutral beta-cyclodextrin, the positively charged host 2 showed decreased binding toward (ferrocenylmethyl)dimethylaminium guests. This was attributed to electrostatic repulsion, while the negatively charged host 3 displayed increased binding due to electrostatic attractions. Thermodynamically, the ionization of host CDs affects both enthalpic and entropic changes of host-guest complexations presumably by changing the hydrophobicity and the desolvation effect of hosts upon inclusion complexation. Moreover, the solvent effect was also discussed from the viewpoint of thermodynamics.     

Aminoglycoside complexation with a DNA.RNA hybrid duplex: the thermodynamics of recognition and inhibition of RNA processing enzymes

Spectroscopic and calorimetric techniques were employed to characterize and contrast the binding of the aminoglycoside paromomycin to three octamer nucleic acid duplexes of identical sequence but different strand composition (a DNA.RNA hybrid duplex and the corresponding DNA.DNA and RNA.RNA duplexes). In addition, the impact of paromomycin binding on both RNase H- and RNase A-mediated cleavage of the RNA strand in the DNA.RNA duplex was also determined. Our results reveal the following significant features: (i) Paromomycin binding enhances the thermal stabilities of the RNA.RNA and DNA.RNA duplexes to similar extents, with this thermal enhancement being substantially greater in magnitude than that of the DNA.DNA duplex. (ii) Paromomycin binding to the DNA.RNA hybrid duplex induces CD changes consistent with a shift from an A-like to a more canonical A-conformation. (iii) Paromomycin binding to all three octamer duplexes is linked to the uptake of a similar number of protons, with the magnitude of this number being dependent on pH. (iv) The affinity of paromomycin for the three host duplexes follows the hierarchy, RNA.RNA > DNA.RNA > DNA.DNA. (v) The observed affinity of paromomycin for the RNA.RNA and DNA.RNA duplexes decreases with increasing pH. (vi) The binding of paromomycin to the DNA.RNA hybrid duplex inhibits both RNase H- and RNase A-mediated cleavage of the RNA strand. We discuss the implications of our combined results with regard to the specific targeting of DNA.RNA hybrid duplex domains and potential antiretroviral applications.     

On the structure and photodissociation of cluster ions in the gas phase. (N2) (O2+) and (NO)2+

Results are presented for two experiments on N₂O₂⁺ cluster ions formed via the reactions O₂⁺ + N₂ + M → (N₂) (O₂⁺) + M (i), and NO⁺ + NO + M → (NO)₂⁺ + M (ii). In the first experiment the N₂O₂⁺ clusters are collisionally dissociated. The resulting collision-induced dissociation (CID) spectra show almost exclusively O₂⁺ and N₂⁺ products from N₂ O₂⁺ formed via the first reaction, and almost exclusively NO⁺ products from N₂O₂⁺ formed via the second reaction. In the second experiment, single-photon photodissociation of N₂O₂⁺ ions produced by both reactions (i) and (ii) was investigate using 514.5 and 634 nm radiation. The results indicate that the N₂O₂⁺ cluster from reaction (i) cannot be photodissociated while the N₂O₂⁺ cluster from reaction (ii) undergoes photodissociation at both wavelengths. These experiments indicate that two distinct N₂O₂⁺ cluster ions exist and that reactions (i) and (ii) selectively produce the two ions.     

Effect of Surface Impurities on Oscillation in NO+CO/Pt(100) Reaction System

A lattice gas model was proposed to explore the effect of inert surface impurities on the oscillation in the NO+CO reaction system on Pt(100). It was found that when the fraction of the impurities is small, the (1*1) phase resulting from the surface restructuring can form a connected phase and the system exhibits a global sustained oscillation. With the fraction of the impurities increasing, the (1*1) phase only can form many isolated patches and the spatial coherence between the local oscillators with a random phase relationship lost, and as a result, the sustained oscillation changes into a damped one. When the diffusion rate of adsorbed CO and NO increases, the synchronization between local oscillators is enhanced and the global sustained oscillation can appear again.     

Synthesis and molecular recognition of novel oligo(ethylenediamino) bridged bis(beta-cyclodextrin)s and their copper(II) complexes: enhanced molecular binding ability and selectivity by multiple recognition

Four bridged bis(beta-cyclodextrin)s tethered by different lengths of oligo(ethylenediamine)s have been synthesized and their inclusion complexation behavior with selected substrates elucidated by circular dichroism spectroscopy and fluorescence decay. In order to study their binding ability quantitatively, inclusion complexation stability constants with four dye guests, that is, brilliant green (BG), methyl orange (MO), ammonium 8-anilino-1-naphthalenesulfonic acid (ANS), and sodium 6-(p-toluidino)-2-naphthalenesulfonate (TNS), have been determined in aqueous solution at 25 degrees C with spectrophotometric, spectropolarimetric, or spectrofluorometric titrations. The results obtained indicate that the two tethered cyclodextrin units might cooperatively bind to a guest, and the molecular binding ability toward model substrates, especially linear guests such as TNS and MO, could be extended. The tether length plays a crucial role in the molecular recognition, the binding constants for ANS and TNS decrease linearly with an increase in the tether length of dimeric cyclodextrin. The Gibbs free energy changes (-deltaGo) for the unit increment per ethylene are 0.99 kJ mol(-1) for ANS and 0.44 kJmol(-1) for TNS, respectively. On the other hand, the presence of a copper(II) ion in metallobis(beta-cyclodextrin)s oligo(ethylenediamino) tethers enhances not only the original binding ability, but also the molecular selectivity through triple or multiple recognition, as compared with the parent bis(beta-cyclodextrin)s.     

Molecular recognition studies on supramolecular systems. 32. Molecular recognition of dyes by organoselenium-bridged bis(beta-cyclodextrin)s.

A series of novel bis(beta-cyclodextrin)s tethered with organoselenium linkers, i.e., 6,6'-(o-phenylene-diseleno)-bridged bis(beta-cyclodextrin) (2), 6,6'-[2,2'-diselenobis(benzoyloxy)]-bridged bis(beta-cyclodextrin) (3), and 6,6'-[2,2'-diselenobis[2-(benzoylamino)ethylamino]]-bridged bis(beta-cyclodextrin) (4), were synthesized from beta-cyclodextrin (1). The inclusion complexation behavior of 1-4 with some dyes, such as 8-anilinonaphthalenesulfonate (ANS), Brilliant Green, Crystal Violet, Tropaeolin OO, Auramine O, and Methyl Orange, was investigated in aqueous phosphate buffer solution (pH 7.20) at 25 degrees C by UV-vis, fluorescence, and circular dichroism spectrometry, as well as fluorescence lifetime measurements. The complex stability constants (Ks) and Gibbs free energy changes (delta Go) for the stoichiometric 1:1 inclusion complexation of 1-4 with the dyes were obtained by the spectrophotometric or spectropolarimetric titrations. The bis(beta-cyclodextrin)s 2-4 showed much higher affinities toward these guest dyes than native beta-cyclodextrin 1 with fairly good molecular selectivities. The cooperative binding abilities of these bis(beta-cyclodextrin)s are discussed from the viewpoints of size/shape-fit interaction, induced-fit concept, and multiple recognition mechanism.     

NO donors cis-[Ru(bpy)2(L)NO] and [Fe(CN)4(L)NO] complexes immobilized on modified mesoporous silica spheres

The reaction of [Ru(bpy)₂Cl₂] and Na₂[Fe(CN)₄(dmso)₂] complexes with isonicotinic acid immobilized on silica spheres (Si-ATPS-ISN) followed by a NO bubbling produced Si-ATPS-ISN-[Ru(bpy)₂(NO)] (system I) and Si-ATPS-ISN-[Fe(CN)₄(NO)] (system II). The characterization of these systems was carried out by UV–Vis, FTIR spectroscopy and electrochemical techniques. As judged by the FTIR data, the nitric oxide ligand has an NO⁺ character in both systems (ν(NO⁺): 1938 cm⁻¹). The NO release, which was monitored by means of FTIR, electrochemistry, and NO sensor electrode, was observed for both systems upon white light irradiation and chemical reduction by cysteine. These results indicated that the system (II) presents a higher potential for controlled NO release. The characterization (FTIR and UV–Vis) of the systems after the NO release suggested the formation of the aqua systems ATPS-ISN-[Ru(bpy)₂(OH₂)] and ATPS-ISN-[Ru(bpy)₂(OH₂)].     

Reactivity of the Re-NO centre: Proton induced oxidation of Re(NO)2+ to Re(NO)3+. Synthesis and characterisation of some Re(II) thiocyanato-halogenonitrosyl complexes

The Re(NO)²⁺ moiety as [Re(NO)(NCS)₃H₂O]⁻ or [Re(NO)(NCS)₂(L-L)H₂O]· [L-L = phen (1,10-phenanthroline) or bipy (2,2′-bipyridine)] undergoes proton-induced oxidation reaction with HX (X = Cl, Br) to produce a Re(NO)³⁺ moiety. The spectral and physico-chemical data suggest that the anionic complex is 5 coordinate and the neutral one is 6 coordinate with axial NO group and two NCS ligands intrans-equatorial positions. The complex, [Re(NO)(NCS)₂(phen)Br]·H₂O shows complicated magnetic behaviour which is discussed in the paper. The ESR spectrum of this compound shows typical rhenium hyperfines and <g>-tensor anisotropy compatible with the loss of axial symmetry. However, the spectrum of [Re(NO)(NCS)₂Br₂]⁻ quite reasonably shows axial symmetry, other features being grossly comparable to the L-L compounds. The anionic species and the neutral L-L complex show irreversible one-electron oxidation waves at different voltages. This may correspond to a conversion of Re(NO)³⁺ to Re(NO)⁴⁺ in both the cases. Interestingly enough, only the neutral complexes exhibit an irreversible reduction wave due probably to a conversion of Re(NO)³⁺ to Re(NO)²⁺.     

Molecular structure and nonlinear optical properties of a tetrasilver(I) phosphonitocavitand

A tetrasilver(I) phosphonitocavitand was synthesized and structurally characterized. The compound crystallizes in the monoclinic space group P2₁/n with a=15.0151(13), b=39.832(4), c=15.2479(14) Å, β=95.1000(2)°, V=9083.3(14) Å³ and Z=4. The structure contains four coplanar silver atoms bridged by four μ-Cl and one central trapped μ₄-Cl atoms in the inside of the closing bowl-shaped cavitand. Nonlinear optical properties of this metal-cavitand were investigated. Optical limiting effect with threshold of 0.6 J cm⁻² was observed with the laser pulses of 7 ns at 532 nm.     

Amine nitrosation via NO reduction of the polyamine copper(II) complex Cu(DAC)2+

The reaction of the fluorescent macrocyclic ligand 1,8-bis(anthracen-9-ylmethyl)-1,4,8,11-tetraazacyclotetradecane with copper(II) salts leads to formation of the Cu(DAC)2+ cation (I), which is not luminescent. However, when aqueous methanol solutions of I are allowed to react with NO, fluorescence again develops, owing to the formation of the strongly luminescent N-nitrosated ligand DAC-NO (II), which is released from the copper center. This reaction is relatively slow in neutral media, and kinetics studies show it to be first order in the concentrations of NO and base. In these contexts, it is proposed that the amine nitrosation occurs via NO attack at a coordinated amine that has been deprotonated and that this step occurs with concomitant reduction of the Cu(II) to Cu(I). DFT computations at the BP/LACVP* level support these mechanistic arguments. It is further proposed that such nitrosation of electron-rich ligands coordinated to redox-active metal centers is a mechanistic pathway that may find greater generality in the biochemical formation of nitrosothiols and nitrosoamines.     

Chemistry and thermodynamics of the twin charge-ordering transitions in RBaFe2O5+w series

Thermal and volume parameters of the twin charge-ordering Verwey transitions in RBaFe₂O_5+w (R=a rare-earth element) are summarized as a function of R and w. Their determination is exemplified for case R = Dy, for which also synthesis conditions, phase relations, and refined crystal-structure data for the valence-mixed (Fe^2.5+) and charge-ordered (Fe²⁺ and Fe³⁺) phases are reported. Data for the R=Nd, Sm, Eu and Gd variants with wide ranges of oxygen non-stoichiometry suggest that increasing w decreases ΔS and the temperature of the transition in a manner that is similar to a behavior under increasing concentration of an ideal solution of RBaFe₂O₆ in RBaFe₂O₅. Thermal parameters of the transition for the ideal mixed-valence composition RBaFe₂O_5.000 are estimated from such compositional dependences, varying reasonably smoothly as a function of R (radius, electronegativity, polarizability). Parameter ΔV is the only one that follows the structural discontinuity between the charge-ordered R = Nd and variants with smaller trivalent R ions. The ordering of the d_xz orbitals of the Fe²⁺ ions is thus being achieved at a cost of lowering the symmetry when the R size becomes unfavorably large. A definition of the Verwey transition as a first-order orbital ordering of a valence-mixed phase is suggested.     

Influence of the composition of acetonitrile-dimethyl sulfoxide solvent on the thermodynamics of silver(I) complexation with piperidine

The influence of the composition of the acetonitrile-dimethyl sulfoxide solvent on the main thermodynamic characteristics (ΔG°, ΔH°, ΔS°) of the complexation between silver(I) and piperidine was studied by the calorimetric and potentiometric methods. Analysis of the obtained experimental material was carried out using the solvation approach based on the thermodynamic solvation characteristics of the reactants.     

Effect of phosphate complexation on Cd2+ sorption by manganese dioxide (beta-MnO2)

Sorption of metal ions on oxide/hydroxide surfaces mediates the fate and transport of these ions in many natural systems. These metallic ions often exist in bulk in the aqueous phase as complexes with inorganic and organic ligands. In the present study, we investigated the sorption properties of manganese dioxide in the presence of phosphate which is thought to be one of the most important complex forming species. The surface area, point of zero charge and structural morphology of the solid manganese dioxide were determined. Cd(2+) sorption studies were carried out on manganese dioxide as a function of pH, temperature and phosphate concentration. Cd(2+) sorption increased with increasing pH, temperature and phosphate concentration. It was found that phosphate formed both outer and inner sphere complexes via metal and ligand-like adsorption. The Langmuir equation was applied to describe the data and from the constants of this equation different thermodynamic parameters such as DeltaH(0), DeltaS(0) and DeltaG(0) were evaluated.