N1...N3 hydrogen bonds of A:U base pairs of RNA are stronger than those of A:T base pairs of DNA

Trans-hydrogen-bond deuterium isotope effects of Watson-Crick A:U and A:T base pairs of 10 homologous RNA and DNA duplexes are compared. The isotope effect at 13C2 of adenosine residues due to deuterium/protium substitution at the imino H3 site, 2hDelta13C2, is larger in RNA than in DNA. The virtually consistent larger isotope effects in RNA suggest that the N1...N3 hydrogen bonds of A:U base pairs of RNA are stronger than those of the A:T base pairs of DNA.     

Solid-state NMR studies of methyl celluloses. Part 2: Determination of degree of substitution and O-6 vs. O-2/O-3 substituent distribution in commercial methyl cellulose samples

Solid state NMR spectroscopy was applied to determine the overall degree of substitution (DS) and the degrees of substitution at C-6 (DS_C-6) and C-2/3 (DS_C-2/3). Four commercial methyl cellulose samples were used, having a DS between 0.51 and 1.96 as determined by wet-chemical analysis. The strategy and optimization of the NMR data acquisition as well as the data evaluation procedures are explained in detail. Optimization of the approach mainly comprised (a) maximizing the signal by choice of NMR probe, MAS spinning frequency and B ₀ field, (b) minimizing the measurement time by a Torchia-type experiment and (c) suppressing probe background by rotor-synchronized echo detection. Data evaluation used simply the integration of three different spectral ranges in the ¹³C NMR spectrum. The results of the experiments were in good agreement with the wet-chemical data. The NMR approach takes about the same analysis time as the conventional hydrolysis/chromatography analysis. However, it is a generally applicable and simple alternative without need for an extended sample preparation which is most useful if wet-chemical/chromatographic analyses are undesired or unavailable. Further studies have to concentrate on the validation of the analytical method and application to a larger sample array.     

Hydrogen bonds in ionic liquids revisited: (35/37)Cl NMR studies of deuterium isotope effects in 1-n-butyl-3-methylimidazolium chloride

Detailed knowledge of the structure, dynamics, and interionic interactions of ionic liquids (ILs) is critical to understand their physicochemical properties. In this letter, we show that deuterium isotope effects on the chloride ion 35/37Cl NMR signal represent a useful tool in the study of interionic hydrogen bonds in imidazolium chloride ILs. Sizable Delta35/37Cl(H,D) values obtained for the model system 1-n-butyl-3-methylimidazolium chloride ([C4mim]Cl) upon deuteriation of the imidazolium C-2 and C-2,4,5 positions, of nearly 1 and 2 ppm, respectively, show that the approach can readily identify and differentiate Cl...H hydrogen bonds between the anion and cation. Our study is one of a few examples in which hydrogen-bonding in ILs has been investigated using deuterium isotope effects and, to our knowledge, the only one employing 35/37Cl NMR to detect these interactions. The methodology described could be easily extended to the study of other systems bearing NMR-active nuclei.     

Characterization of Doubly Ionic Hydrogen Bonds in Protic Ionic Liquids by NMR Deuteron Quadrupole Coupling Constants: Differences to H‐bonds in Amides,Peptides, and Proteins

We present the first deuteron quadrupole coupling constants (DQCCs) for selected protic ionic liquids (PILs) measured by solid‐state NMR spectroscopy. The experimental data are supported by dispersion‐corrected density functional theory (DFT‐D3) calculations and molecular dynamics (MD) simulations. The DQCCs of the N−D bond in the triethylammonium cations are the lowest reported for deuterons in PILs, indicating strong hydrogen bonds between ions. The NMR coupling parameters are compared to those in amides, peptides, and proteins. The DQCCs show characteristic behavior with increasing interaction strength of the counterion and variation of the H‐bond motifs. We report the similar presence of the quadrupolar splitting pattern and the narrow liquid line in the NMR spectra over large temperature ranges, indicating the heterogeneous nature of PILs.     

Chemistry in human telomere biology: structure, function and targeting of telomere DNA/RNA

Telomeres are present at the ends of all eukaryotic chromosomes. Human telomeres play an important role in critical processes underlying genome stability, cancer, and aging, and their importance was recognized via the award of the 2009 Nobel Prize in Physiology or Medicine. Chemistry has made vast and almost unparalleled contributions to telomere biology. This critical review highlights the contributions of chemistry in human telomeres and summarizes the significant development of human telomere biology. First, I provide an overview of the advances in understanding of the structures and functions of human telomeres. Second, I focus on the current efforts on developing various chemical approaches to targeting human telomeres and telomerase for the treatment of cancer. Third, studies on a newly discovered telomeric repeat-containing RNA are discussed in detail. Last, future challenges in the field are outlined, including perspectives of both chemistry and biology (412 references).     

trans-5-aminopipecolyl-aegPNA chimera: design, synthesis, and study of binding preferences with DNA/RNA in duplex/triplex mode

The design and synthesis of novel chiral PNA monomer based on trans-5-aminopipecolic acid is reported. The trans diequatorial disposition of the 1,4 ring substituents in six-membered 5-aminopipecolic acid derivative could be favorable over trans 1,3 axial-equatorial disposition in 4-aminopipecolic acid of PNA. Studies on the synthesis of trans-4/5-aminopipecolyl PNA-eagPNA chimeras and their binding preferences to DNA/RNA in duplex/triplex modes are described.     

Hydrogen spillover effect in the presence of CoS x /Al2O3 and bulk MoS2 in hydrodesulfurization, hydrodenitrogenation and hydrodeoxygenation

Hydrogen spillover effect was studied in the presence of CoS _x /Al₂O₃ and bulk MoS₂, prepared by thermal decomposition of ammonium tetrathiomolibdate (NH₄)₂MoS₄ dibensothiopene hydrodesulfurization, quinoline hydrodenitrogenation, and Guaiacol dehydrodeoxygenation in micro-flow set at 275–350°C and pressure 3.0 MPa.     

Inhibition by red phosphorus of unimolecular thermal chain-scission in poly(methyl methacrylate): Investigation by NMR,FT-IR and laser desorption/fourier transform mass spectroscopy

The reaction of red phosphorus with poly(methyl methacrylate) under pyrolysis conditions was investigated with a number of physical techniques. A random methyl methacrylate/cyclic anhydride copolymer is formed from atatic PMMA, whereas a random methyl methacrylate/methacrylic acid copolymer is obtained with isotactic PMMA. The backbones of both these copolymers are more stable toward depolymerization than that of PMMA. The flame-retardant activity of red phosphorus with PMMA may arise in part from stabilization of the polymer toward depolymerization via modification of the sidechains.     

Progress of Metal-Based Anticancer Chemotherapeutic Agents in Last two Decades and their Comprehensive Biological (DNA/RNA Binding,Cleavage and Cytotoxicity Activity) Studies

During last two decades, there has been an enormous growth in the discovery of innovative active inorganic anticancer complexes (exerting remarkable cytotoxicity at sub micro-molar levels) derived from myriad ligand scaffolds, mainly acting on cancerous vs healthy cells by either halting or inhibiting their uncontrolled growth. The phenomenal success of cisplatin to treat numerous forms of solid malignancies has placed metal-based drugs to the forefront of treatment strategies against cancers. More than 10,000 platinum anticancer complexes have been developed during the past 40 years, but only five drugs have been approved for usage in humans while ten more complexes are currently undergoing clinical trials. Most of the compounds have failed either at R&D stages or in preclinical trails. This has led to extensive investigations by researchers of medicinal chemistry, including our group to design and prepare tailored 3d-metallo-drugs and organotin(IV) compounds from some naturally occurring bioactive compounds, such as amino-acids, peptides, chromone derivatives and NSAID's etc. that were used either alone or in cocktail combination, capable of specifically targeting DNA, lnc RNAs and proteins. Furthermore, 3d-metal ions such as copper, cobalt and zinc etc. incorporated in these ligand framework are biocompatible and induce a unique multi-modal mechanism of cytotoxic action involving angiogenesis, ROS-induced DNA damage, apoptosis by p53 mitochondrial genes and caspases etc. The results observed a positive correlation between the binding affinity of complexes with DNA (as quantified by intrinsic binding constant values) and their cytotoxic behavior. Complexes with high DNA binding propensity were typically lethal against a diverse panel of malignant cell types compared to normal cells.     

(1S,2R/1R,2S)-cis-cyclopentyl PNAs (cpPNAs) as constrained PNA analogues: synthesis and evaluation of aeg-cpPNA chimera and stereopreferences in hybridization with DNA/RNA

Conformationally constrained chiral PNA analogues were designed on the basis of stereospecific imposition of a 1,2-cis-cyclopentyl moiety on an aminoethyl segment of aegPNA. It is known that the cyclopentane ring is a relatively flexible system in which the characteristic puckering dictates the pseudoaxial/pseudoequatorial dispositions of substituents. Hence, favorable torsional adjustments are possible to attain the necessary hybridization-competent conformations when the moiety is imposed on the conventional PNA backbone. The synthesis of the enantiomerically pure 1,2-cis-cyclopentyl PNA monomers (10a and 10b) was achieved by stereoselective enzymatic hydrolysis of a key intermediate ester 2. The chiral (1S,2R/1R,2S)-aminocyclopentylglycyl thymine monomers were incorporated into PNA oligomers at defined positions and through the entire sequence. Hybridization studies with complementary DNA and RNA sequences using UV-Tm measurements indicate that aeg-cpPNA chimera form thermally more stable complexes than aegPNA with stereochemistry-dependent selective binding of cDNA/RNA. Differential gel shift retardation was observed on hybridization of aeg-cpPNAs with complementary DNA.     

DNA修饰电极的研究: VIII. 1, 10-菲咯啉存在时钴离子在ssDNA 修饰金电极上 的电化学行为及痕量钴的检测

发现在过量1,10-菲咯啉存在时,Co^3^+^/^2^+在单链DNA(ssDNA)修饰金电极上的电化学响应显著增强。采用紫外光谱和循环伏安法考察了Co^3^+^/^2^+/1,10-菲咯啉体系与sSDNA的相互作用,并利用Co^3^+^/^2^+在1,10-菲咯啉存在时在ssDNA修饰金电极上的高灵敏电化学响应对痕量钴离子进行了测定。