Kinetics of CH + N2 revisited with multireference methods

The potential energy surface for the CH + N2 reaction was reexamined with multireference ab initio electronic structure methods employing basis sets up to aug-cc-pvqz. Comparisons with related CCSD(T) calculations were also made. The multireference ab initio calculations indicate significant shortcomings in single reference based methods for two key rate-limiting transition states. Transition state theory calculations incorporating the revised best estimates for the transition state properties provide order of magnitude changes in the predicted rate coefficient in the temperature range of importance to the mechanism for prompt NO formation. At higher temperatures, two distinct pathways make a significant contribution to the kinetics. A key part of the transition state analysis involves a variable reaction coordinate transition state theory treatment for the formation of H + NCN from HNCN. The present predictions for the rate coefficients resolve the discrepancy between prior theory and very recent experimental measurements.     

PBFC-PI量子动力学方法及应用

对多原子体系的量子动力学计算非常重要, 然而, 对含六原子以上的分子体系进行精确量子动力学计算仍具挑战性. 面向过程的基函数定制(PBFC)-并行迭代(PI)方法是一种高效的量子动力学方法, 已应用于对含九原子的丙二醛异构体系的氢迁移速率的精确量子计算. 本综述首先阐明了PBFC的基本思想, 之后重点回顾了PBFC-PI方法的具体内容、 该方法与其它方法的结合及其应用方面的新进展. 应用这些方法实现了对单氢迁移、 协同双氢迁移和分步双氢迁移3种类型基准体系的大规模并行计算, 有助于获得对氢迁移过程的新认识.     

Synthesis of π‐Conjugated Benzocyclotrimers

Polycyclic aromatic hydrocarbons (PAHs), especially three branchphene benzocyclotrimers represent a series of molecules with intriguing physical and chemical properties. Benzocyclotrimers are also important precursors to construct fullerenes and graphenes. In this article, we review the recent progress in the preparation methods of π‐conjugated benzocyclotrimers. In particular, cyclotrimerization reactions to construct varying shaped and edged benzocyclotrimers are illustrated. Various typical characterization methods for these materials, such as variable‐temperature ¹H‐NMR, single crystal X‐ray analysis, density functional theory (DFT) calculations and atomic force microscope (AFM) measurements are included for discussion.     

Cascade reaction of imines with phenylsulfinylallene. X-ray structure of the product and its formation mechanism

The structure of the product derived from the reaction of a dihydropyridine derivative with phenylsulfinylallene has been clarified by a single crystal X-ray analysis and the formation mechanism is discussed on the basis of the reaction-path calculations by semiempirical and ab initio molecular orbital methods.     

Correlated ab initio calculation of electronic g-tensors using a sum over states formulation

An implementation of a sum-over-states (SOS) formulation for the electronic g-tensor is reported and evaluated through test calculations. The calculations include contributions from the relativistic mass correction, the gauge correction and the second-order orbital Zeeman/spin–orbit coupling part. Five different configuration interaction (CI) based methods ranging from single excitation CI to accurate multireference methods were evaluated. The results were compared to experimental data and other high-level calculations.     

Application of standard DFT theory for nonbonded interactions in soft matter: prototype study of poly-para-phenylene

We present a detailed analysis of the application of density functional theory (DFT) methods to the study of structural properties of molecular and supramolecular systems, using as a paradigmatic example three para-phenylene-based systems: isolated biphenyl, single chain poly-para-phenylene, and crystalline biphenyl. We use different functionals for the exchange correlation potential, the local density (LDA), and generalized gradient approximations (GGA), and also different basis sets expansions, localized, plane waves (PW), and mixed (localized plus PW), within the reciprocal space formulation for the hamiltonian. We find that regardless of the choice of basis functions, the GGA calculations yield larger interring distances and torsion angles than LDA. For the same XC approximation, the agreement between calculations with different basis functions lies within 1% (LDA) or 0.5% (GGA) for distances, and while PW and mixed basis calculations agree within 1 degrees for torsion angles, the localized basis results show larger angles by approximately 8 degrees and a nonmonotonic dependence on basis size, with differences within 6 degrees. The most prominent features, namely the torsion between rings for isolated molecule and infinite chain, and planarity for the molecule in crystalline environment, are well reproduced by all DFT calculations.     

Use of DSC and TG for identification and quantification of the dosage form

Thermal analysis techniques, DSC and TG can advantageously be used in quality control of drug products.The methods are commonly used in preformulation for the study of polymorphism and for the study of the interactions drug substance-excipients, since these physical interactions can be the basis of the dosage form performance.For routine control of the drug products, DSC and TG methods which are quick, which require only few mg of the samples and which are automated, are very attractive for routine analysis of drug products. A single scan can give several qualitative and quantitative informations.DSC offer analytical possibilities only if the drug substance and the excipients do not have physical interactions or limited interactions (e.g. eutectic behaviour). About twenty marketed products have been analyzed by DSC and TG. In most of them identification of drug substance is easy. Several excipients could be identified in a tablet. Quantitations are demonstrated for some drug substances and excipients. DSC purity calculations have been applied to acetyl salicylic acid, paracetamol, cimetidine, pindolol, ibuprofen.     

Peculiarities of the environmental influence on the optical properties of push-pull nonlinear optical molecules: a theoretical study

Gas-phase geometry optimization of NLO-active molecules is one of the standard approaches in the first principle computational methodology, whereas the important role of the environment is usually not considered during the evaluation of structural parameters. With a wide variety of environmentally influenced models in most cases only the high quality single point calculations are prepared. Among different approaches, the most used polarizable continuum model (PCM) seems to be promising. In this study, we have compared the electronic properties of gas-phase optimized geometries of imidazole-derived push-pull compounds with those optimized using PCM solvation approach including CH(2)Cl(2) and PMMA as media. We have focused particularly on the linear optical properties of investigated molecules, namely on the UV-vis absorption spectra. The analysis of presented results shows the applicability of the different quantum chemical (QC) methods for the UV-vis spectra calculations of linear NLO molecules. Herein we also present the need of molecule geometry optimization affected by the environment. Following the performed calculations, the electronic properties of gas-phase optimized molecules give conformable results with respect to those obtained by more time-consuming continuum optimizations. All computational data are supported by experimental investigations.     

Excited-State Electronic Structure with Configuration Interaction Singles and Tamm-Dancoff Time-Dependent Density Functional Theory on Graphical Processing Units

Excited-state calculations are implemented in a development version of the GPU-based TeraChem software package using the configuration interaction singles (CIS) and adiabatic linear response Tamm-Dancoff time-dependent density functional theory (TDA-TDDFT) methods. The speedup of the CIS and TDDFT methods using GPU-based electron repulsion integrals and density functional quadrature integration allows full ab initio excited-state calculations on molecules of unprecedented size. CIS/6-31G and TD-BLYP/6-31G benchmark timings are presented for a range of systems, including four generations of oligothiophene dendrimers, photoactive yellow protein (PYP), and the PYP chromophore solvated with 900 quantum mechanical water molecules. The effects of double and single precision integration are discussed, and mixed precision GPU integration is shown to give extremely good numerical accuracy for both CIS and TDDFT excitation energies (excitation energies within 0.0005 eV of extended double precision CPU results).     

Radiation-induced radicals in alpha-D-glucose: Comparing DFT cluster calculations with magnetic resonance experiments

Using density functional theory (DFT) calculations, an enhanced theoretical examination was made of the radiation-induced radicals in alpha-d-glucose. For the carbon-centred radicals in this sugar, the effect of the model space on the radical geometry as well as on the calculated radical hyperfine coupling tensors was examined. The findings were compared with previously published tensors, as determined by electron paramagnetic resonance (EPR) experiments and single molecule DFT calculations. A cluster approach was adopted, in which intermolecular interactions (predominantly hydrogen bonds) between the radical species and its environment were explicitly incorporated. This substantially improved the correspondence with experimental findings in comparison with single molecule calculations of an earlier examination. In a direct comparison between both computational methods for the glucose radicals, it was shown that the extent of the model space plays an important part in the determination of the radical geometry. Furthermore, the model space also has an impact on the calculated hyperfine coupling tensors. Full cluster EPR calculations, in which the paramagnetic properties are calculated for the entire model space of the cluster, give an excellent agreement with the experimental EPR measurements.     

Importance of structural motifs in liquid hydrogen fluoride

The investigation of liquid phases by means of accurate electronic structure methods is a demanding task due to the high computational effort. We applied second-order M?ller-Plesset perturbation theory and high-level quantum chemical calculations using the coupled-cluster method with single, double and perturbative triple excitations in combination with Dunnings correlation-consistent basis sets up to quintuple ζ quality. Based on these calculations, we extrapolated the correlation energy to the basis set limit in order to improve the results even further. For comparison to the correlated electronic structure methods, density functional calculations employing different functionals are presented as well. The investigated species are a cyclic pentamer as well as a set of branched structures. The quantum cluster equilibrium method is employed for the investigation of the liquid-phase structure of hydrogen fluoride. The pentamer is found to be present to a high extent and in the case of the MP2/QZVP data, its presence improves the results significantly. Accounting for branched structures slightly improves results, so that they are found to be present but not to dominate in liquid hydrogen fluoride. Concerning both the interaction energy and the result of the quantum cluster equilibrium calculation the basis set has a major influence, whereas the difference between M?ller-Plesset perturbation theory and coupled-cluster calculations is less pronounced.     

BrONO2光解反应的理论研究

采用密度泛函方法,研究了大气臭氧层主要破坏物BrONO2的光解反应机理,在UB3LYP/6-311++G**水平上优化了反应物、产物、中间体和过渡态的几何构型,并在UQCISD(T)/6-311++G**水平上计算了单点能量,为了确证过渡态的真实性,在UB3LYP/6-311++G**水平上进行了内禀反应坐标(IRC)计算和频率分析.研究结果表明,BrONO2的光解反应有两条反应通道,其中生成BrO+NO2的反应活化能较小(14.89 kJ·mol-1),较易发生.     

Examining the robustness of first-principles calculations for metal hydride reaction thermodynamics by detection of metastable reaction pathways

First principles calculations have played a useful role in screening mixtures of complex metal hydrides to find systems suitable for H(2) storage applications. Standard methods for this task efficiently identify the lowest energy reaction mechanisms among all possible reactions involving collections of materials for which DFT calculations have been performed. The resulting mechanism can potentially differ from physical reality due to inaccuracies in the DFT functionals used, or due to other approximations made in estimating reaction free energies. We introduce an efficient method to probe the robustness of DFT-based predictions that relies on identifying reactions that are metastable relative to the lowest energy reaction path predicted with DFT. An important conclusion of our calculations is that in many examples DFT cannot unambiguously predict a single reaction mechanism for a well defined metal hydride mixture because two or more mechanisms have reaction energies that differ by a small amount. Our approach is illustrated by analyzing a series of single step reactions identified in our recent work that examined reactions with a large database of solids [Kim et al., Phys. Chem. Chem. Phys. 2011, 13, 7218].     

Solubility and equilibria of silver chloride

An hyperbolic cosine method for the study of the solubility equilibria of silver chloride in the presence of sodium chloride is reported in this paper. Various approximations are usually performed in a study of this kind of system in order to carry out single calculations. However, the method proposed considers all solubility data simultaneously, being as a result either more rigorous or simpler than the methods previously used.     

Improved efficiency of focal point conformational analysis with truncated correlation consistent basis sets

It has been suggested that the computational cost of correlated ab initio calculations could be reduced efficiently by using truncated basis sets on hydrogen atoms (Mintz et al., J Chem Phys 2004, 121, 5629). We now explore this proposal in the context of conformational analysis of small molecules, such as hydrogen peroxide, dimethyl ether, ethyl methyl ether, formic acid, methyl formate, and several small alcohols. It is found that truncated correlation consistent basis sets that lack certain higher angular momentum functions on hydrogen atoms offer accuracy similar to traditional Dunning's basis sets for conformational analysis. Combination of such basis sets with the basis set extrapolation technique to estimate Hartree-Fock and M?ller-Plesset second order energies provides composite extrapolation model chemistries that are significantly more accurate and faster than analogous single point calculations with traditional correlation consistent basis sets. Root mean square errors of best composite extrapolation model chemistries on the used set of molecules are within 0.03 kcal/mol of traditional focal point conformational energies. The applicability of composite extrapolation methods is illustrated by performing conformational analysis of tert-butanol and cyclohexanol. For comparison, conformational energies calculated with popular molecular mechanics force fields are also given.     

Comparative study of relativistic density functional methods applied to actinide species AcO(2)(2+) and AcF(6) for Ac = U,Np

A two-component relativistic density functional method based on the Douglas-Kroll-Hess transformation has been applied to the actinyls and hexafluorides of U and Np. All-electron scalar relativistic calculations as well as calculations including spin-orbit interaction have been compared to results obtained with a pseudopotential approach. In addition, several exchange-correlation potentials have been applied to examine their performance for the bond lengths and vibrational frequencies of the title compounds. The calculations confirm the well-known accuracy of the LDA approach for geometries and frequencies, which is corroborated for the hexafluorides where gas phase experimental data are available. Comparison with results of accurate wave function based methods provides further confirmation of this finding. Gradient-corrected functionals tend to overestimate bond lengths and underestimate frequencies also for actinide compounds. The results obtained with Stoll-Preuss (small core) effective core potentials agree very well with those of all-electron calculations, while calculations with Hay-Martin large core pseudopotentials are somewhat less accurate. For all molecules and properties considered, spin-orbit effects have been found negligible concomitant with the closed-shell electronic structure of the U(VI) compounds and the open-shell situation of the Np(VI) compounds with a single valence f electron.     

Electronic structure and optical properties of chelating heteroatomic conjugated molecules: a SAC-CI study

The electronic structure and optical properties of 13 chelating heteroatomic conjugated molecules such as pyridine, benzoxazole, and benzothiazole derivatives, which are used as C–N ligands in organometallic compounds, have been investigated. The geometries of the ground and first excited states were obtained by the DFT and CIS methods, respectively, followed by the SAC-CI calculations of the transition energies for absorption and emission. For six compounds whose experimental data are available, the SAC-CI calculations reproduced the experimental values satisfactorily with deviations of less than 0.3 eV for absorption and 0.1 eV for emission except for benzoxazoles. For other molecules, the theoretical absorption and emission spectra were predicted. The lowest ππ* excited-state geometries was calculated to be planar for most of the molecules with two or three conjugated rings connected by single bond. The geometry change due to the ππ* excitation was qualitatively interpreted by electrostatic force theory based on SAC/SAC-CI electron density difference. The excitations are relatively localized in the central region and in the lowest ππ* excited state, the inter-ring single bond shows large change, with a contraction of 0.05–0.09 Å. The present calculations provide reliable information regarding the energy levels of these chelating heteroatomic conjugated compounds.