Vibration of small molecules on Pt(1 1 1) surface

The adsorption of methanol and other small molecules onto transition metal surfaces is an important issue in electrochemistry, fuel cells, etc. Despite the overwhelming interest there are still unresolved issues beginning from the geometry of the adsorbed species to the correct assignments of different vibrational modes of the adsorbed molecules on the surface.In order to understand the adsorption processes, we have performed density functional theory (DFT) calculations for small molecules (methanol, formaldehyde, formic acid) on Pt(1 1 1) surfaces. We investigated the nature of the metal-ligand bonding in these adsorption processes using electron density difference and PDOS (partial density of states) methods. Ab initio vibration spectra have been calculated for these systems.     

An effective Hamiltonian for sulfur adsorption at Au(1 0 0) surface

Adsorption of sulfur at the (1 0 0) surface of gold is analyzed with the help of the density functional theory (DFT). Potential energy surface for a single S atom at the Au(1 0 0) surface is computed and a simple analytical formula was found to reproduce the ab initio results to a good accuracy. Vibration frequencies of the adsorbed S atom are computed using the harmonic approximation and the contribution of zero-point motion to the adsorption energy is evaluated. The effects of surface Au atoms relaxation in the sulfur adsorption is analyzed. The interactions between S atoms adsorbed at the nearest and the next nearest equivalent adsorption sites are computed and used to define the effective Hamiltonian describing the interactions between the adsorbed sulfur atoms.     

Hexaphenyl thin films on clean and carbon covered Au(1 1 1) studied with TDS and LEED

The adsorption and growth of ordered para-hexaphenyl (6P) films have been investigated both on clean and partially carbon pre-covered Au(1 1 1) single crystal surfaces by thermal desorption spectroscopy (TDS) and low energy electron diffraction (LEED) under ultra-high vacuum conditions. The existence of a distinct first and second monomolecular 6P layer that clearly separate from the multilayer regime, which comprise lying molecules with respect to the substrate surface, could be inferred from TDS. For both the 6P mono- and multilayer grown on pure Au(1 1 1) the desorption energies have been determined based on experimental TDS data. In particular, for the monolayer regime a coverage dependence of the desorption energy has been found, which is attributed to repulsive interactions between neighbouring 6P molecules adsorbed on the gold surface. The existence of well-ordered film structures could be inferred from LEED for half monolayer and full monolayer thick 6P films. Based on the LEED and TDS data, structural models are presented for these highly ordered organic films. Multi-step dehydrogenation of 6P molecules adsorbed on clean Au(1 1 1) surfaces is reported for temperatures above 650 K together with experimental evidence for the existence of a regular overlayer composed of partially dehydrogenated polycyclic aromatic hydrocarbon (PAH) intermediates. A quite different adsorption/desorption kinetics and film growth has been observed for 6P films grown on carbon pre-covered Au(1 1 1) surfaces.     

Adsorption properties of CO on low-index Pt3Sn surfaces

The adsorption properties of CO on Pt₃Sn were investigated by utilizing quantum mechanical calculations. The (1 1 1), (1 1 0) and (0 0 1) surfaces of Pt₃Sn were generated with all possible bulk terminations, and on these terminations all types of active sites were determined. The adsorption energies and the geometries of the CO molecule at those sites were found. Those results were compared with the results obtained from the adsorption of CO on similar sites of Pt(1 1 1), Pt(1 1 0) and Pt(0 0 1) surfaces. The comparison reveals that adsorption of CO is stronger on Pt surfaces; this may be the reason why catalysts with Pt₃Sn phase do not suffer from CO posioning in experimental works. Aiming to understand the interactions between CO and the metal adsorption sites in detail, the local density of states (LDOS) profiles were produced for atop-Pt adsorption, both for the carbon end of CO for its adsorbed and free states, and for the Pt atom of the binding site. LDOS profiles of C of free and adsorbed CO and Pt for corresponding pure Pt surfaces, Pt(1 1 1), Pt(1 1 0) and Pt(0 0 1) were also obtained. The comparison of the LDOS profiles of Pt atoms of atop adsorption sites on the same faces of bare Pt₃Sn and Pt surfaces showed the effect of alloying with Sn on the electronic properties of Pt atoms. Comparison of LDOS profiles of the C end of CO in its free and atop adsorbed states on Pt₃Sn and LDOS of Pt on bare and CO adsorbed Pt₃Sn surface were used to clear out the electronic changes occurred on CO and Pt upon adsorption. The study showed that (i) inclusion of a Sn atom at the adsorption site structure causes dramatic decrease in stability which limits the number of possible CO adsorption sites on Pt₃Sn surface, (ii) the presence of Sn causes angles different from 180° for M-C-O orientation, (iii) the presence of Sn in the neighborhood of Pt on which CO is adsorbed causes superposition of the 5σ/1π derived-state peaks at the carbon end of CO and changes in adsorption energy of CO, (iv) Sn present beneath the adsorption site strengthens the CO adsorption, whereas neighboring Sn on the surface weakens it for all Pt₃Sn surfaces tested and (v) the most stable site for CO adsorption is the atop-Pt site of the mixed atom termination of Pt₃Sn(1 1 0).     

SFG experiment and ab initio study of the chemisorption of CN on low-index platinum surfaces

A dual analysis is proposed in order to have a better understanding of the adsorption of the cyanide ions on a platinum electrode. The SFG (Sum Frequency Generation) spectroscopy allows the in situ vibrational study and the SFG spectra of the CN⁻ species adsorbed on single crystal Pt electrode allow a systematic study of the low-index platinum surfaces. This experimental work is supported by ab initio calculations using density functional theory and cluster models. For each surface orientation and each geometry, a cluster model of 20-30 Pt atoms has been built in order to interpret the chemisorption of the CN⁻ ions through four kinds of adsorption geometry: on-top or bridge site, bonding via C or N atoms. Geometries have been optimized and adsorption energies, electronic properties and vibrational frequencies have been computed. From the electronic properties, we can propose an analysis of the bonding mechanism for each studied kind of adsorption.The SFG spectra of the CN⁻/Pt(1 1 1) system present an unique resonance owing to the top C adsorption. It is mainly the same for the CN⁻/Pt(1 0 0) system. It is also the case for the SFG spectra of the CN⁻/Pt(1 1 0) system recorded at negative electrochemical voltage; at more positive voltage, a second resonance appears at a lower frequency, owing to the top N adsorption.Experimental and theoretical values of the C-N stretching frequencies are in excellent agreement.     

DFT study of NH3 dissociation on Si(1 1 1)-7 × 7. The role of intermolecular interactions

The adsorption of NH₃ molecule on the Si(1 1 1)-7 × 7 surface modelled with a cluster has been studied using density functional theory (DFT). The results indicate the existence of a precursor state for the non-dissociative chemisorption. The active site for the molecular chemisorption is the adatom; while the NH₃ molecule adsorbs on the Si restatom via this preadsorbed state, the adsorption on the Si adatom is produced practically without an energy barrier. The ammonia adsorption on the adatom induces an electron transfer from the dangling bond of this atom to the dangling bond of the adjacent Si restatom, hindering this site for the adsorption of a second NH₃ incoming molecule. However, this second molecule links strongly by means of two H-bonds. The dissociative chemisorption process was studied considering one and two ammonia molecules. For the dissociation of a lonely NH₃ molecule an energy barrier of ∼0.3 eV was calculated, yielding NH₂ on the adatom and H on the restatom. When two molecules are adsorbed, the NH₃-NH₃ interaction yields the weakening of a N-H bond of the ammonia molecule adsorbed closer the Si surface. As a consequence, the dissociation barrier practically disappears. Thus, the presence of a second NH₃ molecule at the adatom-restatom pair of the Si(1 1 1)-7 × 7 surface makes the dissociative reaction self-assisted, the total adsorption process elapsing with a negligible activation barrier (less than 0.01 eV).     

Comparative DFT study of the adsorption of 1,3-butadiene, 1-butene and 2-cis/trans-butenes on the Pt(1 1 1) and Pd(1 1 1) surfaces

The interaction of 1,3-butadiene, 1-butene and 2-cis/trans-butenes on the Pt(1 1 1) and Pd(1 1 1) surfaces has been studied with density functional theory methods (DFT). The same most stable adsorption modes have been found on both metal surfaces with similar adsorption energies. For 1,3-butadiene the 1,2,3,4-tetra-σ adsorption structure is shown to be the most stable one, in competition with a 1,4-metallacycle-type mode, which is only less stable by 10-12 kJ mol⁻¹. On Pt(1 1 1) these total energy calculations were combined with simulations of the vibrational spectra. This confirms that the 1,2,3,4-tetra-σ adsorption is the most probable adsorption structure, but cannot exclude the 1,4-metallacycle as a minority species. Although similar in type and energy, the adsorption on the Pd(1 1 1) surface shows a markedly different geometry, with a smaller molecular distortion upon adsorption. The most stable adsorption structure for the butene isomers is the di-σ-mode. Similarly to the case of the 1,3-butadiene, the adsorption geometry is closer to the gas phase one on Pd than on Pt, hence explaining the different spectroscopic results, without the previously assumed requirement of a different binding mode. Moreover the present study has shown that the different selectivity observed on Pt(1 1 1) and Pd(1 1 1) for the hydrogenation reaction of butadiene cannot be satisfactory explained by the single comparison of the relative stabilities of 1,3-butadiene and 1-butene on these metals.     

Adsorption of CO, CO2 and NO molecules on a BaTiO3 (0 0 1) surface

Since the development of Scanning Tunnelling Microscopy (STM) technique, considerable attention has been devoted to various molecules adsorbed on various surfaces. Also, a new concept emerged with molecules on surfaces considered as nano machines by themselves. In this context, a thorough knowledge of surfaces and adsorbed molecules at an atomic scale are thus particularly invaluable. The present work describes the first Density Functional Theory (DFT) study of adsorption of CO, CO₂ and NO molecules on a BaTiO₃ surface following a first preliminary calculation of O and O₂ adsorption on the same surface. In the previously considered work, we found that a (0 0 1) surface with BaO termination is more stable than the one with TiO₂-termination. Consequently, we extended our study to CO, CO₂ and NO molecules adsorbed on a (0 0 1) surface with BaO termination. The present calculation was performed on a (1 × 1) cell with one monolayer of adsorbed molecules. Especially, a series of cases implying CO molecules adsorbed in various geometrical configurations has been examined. The corresponding adsorption energy varies in the range of −0.17 to −0.10 eV. The adsorption energy of a CO₂ molecule directly located above an O surface atom (called O_s) is of the order of −0.18 eV. The O-C distance length is then 1.24 Å and the O-C-O and O-C-O_s angles are 134.0° and 113.0°, respectively. For NO adsorption, the most important induced structural changes are the followings: (i) the N-O bond is broken when a NO molecule is absorbed on a Ba-O_s bridge site. In that case, N and O atoms are located above an O and a Ba surface atom, respectively, whereas the O-Ba-O_s and N-O_s-Ba angles are 106.5° and 63.0°, respectively. The N-O distance is as large as 2.58 Å and the adsorption energy is as much as −2.28 eV. (ii) In the second stable position, the NO molecule has its N atom adsorbed above an O_s atom, the N-O axis being tilted toward the Ba atom. The N-O_s-Ba angle is then 41.1° while the adsorption energy is only −0.10 eV. At last, the local densities of states around C, O as well as N atoms of the considered adsorbed molecules have also been discussed.     

Adsorption of ethene on Pt(1 1 1) and ordered PtxSn/Pt(1 1 1) surface alloys: A comparative HREELS and DFT investigation

The adsorption of ethene (C₂H₄) on Pt(1 1 1) and the Pt₃Sn/Pt(1 1 1) and Pt₂Sn/Pt(1 1 1) surface alloys has been investigated experimentally by high-resolution electron energy loss spectroscopy and temperature programmed desorption. The experimental results have been compared with density functional theory (DFT) calculations allowing us to perform a complete assignment of all vibration modes and loss features to the species present on the surfaces. On Pt(1 1 1) as well as on the Pt-Sn surface alloys an η² di-σ-bonded conformation of ethene has been found to be the most stable adsorbed form. In addition to this majority species a minor amount of π-bonded ethene has been identified, which is more abundant on the Pt₂Sn surface alloy than on the other surfaces. Additionally the HREELS spectra of ethene on Pt(1 1 1) and the Pt-Sn surface alloys differ only slightly in terms of the energetic positions of the loss peaks.     

吸附氢分子的振动态及熵的计算

用第一性原理方法研究了H_2在(MgO)_9及(AlN)_(12)团簇上的吸附态、振动模式及熵.分析表明,吸附体系的振动中有六个简正模式可归为氢分子的振动;由于氢分子质量很小,零点能修正对吸附能有重要影响.利用振动配分函数计算了吸附氢分子的熵,表明吸附态H_2的熵主要决定于较低的同相振动的频率,并不完全与吸附强度相关;在标准大气压下70—350 K的温度范围内,吸附H_2的熵与气态H_2的熵之间存在很好的线性关系,吸附后H_2的熵减小约10.2R.     

An IRAS study of CO bonding on Sn/Pt(1 1 1) surface alloys at maximal pressures of 10 Torr

The adsorption of CO on Pt(1 1 1), (2 × 2) and (√3 × √3)R30° Sn/Pt(1 1 1) surface alloys has been studied using temperature programmed desorption (TPD), low energy electron diffraction (LEED) and infrared reflection adsorption spectroscopy (IRAS). The presence of Sn in the surface layer of Pt(1 1 1) reduces the binding energy of CO by a few kcal/mol. IRAS data show two C-O stretching frequencies, ∼2100 and ∼1860 cm⁻¹, corresponding to atop and bridge bonded species, respectively. Bridge bonded stretching frequencies are only observed for Pt(1 1 1) and (2 × 2) Sn/Pt(1 1 1) alloy surfaces. A slight coverage dependence of the vibrational frequencies is observed for the three surfaces. High pressure IRAS experiments over a broad temperature range show no indication of bridge bonded CO on any of the three surfaces. Direct CO adsorption on Sn sites is not observed over the measured temperature and pressure ranges.     

CO adsorption on oxygen-modified molybdenum surfaces

Structures of carbon monoxide layers on the oxygen-modified Mo(1 1 0) and Mo(1 1 2) surfaces have been investigated by means of density-functional (DFT) calculations. It is found that CO molecules adsorb at hollow sites on the O/Mo(1 1 0) surface and nearly atop Mo atoms on the O/Mo(1 1 2) surface. The favorable positions for adsorption are shown to be near protrusions of electron density above the Mo surface atoms. The presence of oxygen on the molybdenum surface significantly reduces the binding energy of the CO molecule with the substrate; on the oxygen-saturated Mo(1 1 0) surface, the adsorption of CO is completely blocked. The calculated local densities of states (LDOS) demonstrate that the O 2s peak for O adsorbed on Mo(1 1 0) surface is at −19 eV (with respect to the Fermi level), while for the oxygen atom of an adsorbed CO molecule the related 3σ molecular orbital gives rise to a peak at −23 eV. This difference stems from the bonding of the O atom either with Mo surface for adsorbed O or with C atom in adsorbed CO, and therefore the position of the O 2s peak in photoemission spectra can serve as a convincing argument in favor of either the presence or absence of the CO dissociation on Mo surfaces.     

DFT study of CO and NO adsorption on low index and stepped surfaces of gold

Adsorption energies and vibrational frequencies of CO and NO adsorbed on gold (1 1 1), (1 0 0), (1 1 0) and (3 1 0) surfaces, as well as on adatoms on Au(1 0 0) have been calculated using density functional theory. The results clearly show that the adsorption energy of the molecules increases considerably with increasing the degree of coordinative unsaturation of the gold atoms to which the molecules bind, and thus support the view that defects, steps and kinks on the surface determine the activity of gold catalysts.     

Attenuated total reflectance spectroscopy of coumarin organosilane molecules adsorbed on a fused silica surface

Attenuated total reflectance (ATR) spectroscopy was used to investigate the adsorption of coumarin organosilane molecules onto a fused silica surface. The difference between the absorption spectra of the molecules on the surface and in solution was explained by the interaction of the adsorbed coumarin organosilane molecules with the hydroxyl groups on the fused silica surface. This interaction produces a perturbation of the π electron distribution and the electronic transitions of the coumarin chromophore of the organosilane molecules adsorbed on the surface. From the kinetics adsorption curves, the calculated enthalpy values of 74.8 ± 5.2 kJ mol⁻¹ and free energy of −38.22 ± 0.70 kJ mol⁻¹ at 23 °C indicates a chemisorption process. The high sensitivity of ATR spectroscopy allows the detection of a monolayer formed by a 10 nM concentration of coumarin organosilane molecules, which covers more than half of the maximum surface coverage at 60 °C.     

Adsorption and dissociation of ammonia on Au(1 1 1) surface: A density functional theory study

Periodic density functional theory (DFT) calculations using plane waves had been performed to systematically investigate the stable adsorption amine and its dehydrogenated reaction on Au(1 1 1) surface. The equilibrium configuration including on top, bridge, and hollow (fcc and hcp) sites had been determined by relaxation of the system. The adsorption both NH₃ on top site and NH₂ on bridge site is favorable on Au(1 1 1) surface, while the adsorption of NH on hollow (fcc) site is preferred. The adsorbates are adsorbed on the gold surface with the interaction between p orbital of adsorbate and the d orbital of gold atoms. The interaction between adsorbate and gold slab is more evident on the first layer than on any others. Furthermore, the dissociation reaction of NH₃ on clean gold surface, as well as on the pre-covered oxygen atom and pre-covered hydroxyl group surface had been investigated. The results show that the dehydrogenated reaction energy barrier on the pre-covered oxygen gold surface is lower. The adsorbed O can promote the dehydrogenation of amine. Additionally, OH as the product of the NH₃ dissociation reaction participates in continuous dehydrogenation reaction, and the reaction energy barrier is the lowest (22.77 kJ/mol). The results indicated that OH_ads play a key role in the dehydrogenated reaction on Au(1 1 1) surface.     

Charge transfer and adsorption energies in the iodine-Pt(1 1 1) interaction

The adsorption energies for iodine atom on the fcc, hcp, bridge, and atop sites of the Pt(1 1 1) surface were determined using ab initio DFT method in two different unit cells. A periodic slab model is used and the obtained energies are in agreement with the corresponding experimental values extrapolated at 0 K. The charge transfer is determined by the use of the Hirshfeld partitioning scheme, and the charge transfer values follow the adsorption energy trend for different sites of the Pt(1 1 1) surface. The results show that the plane-wave DFT approach correctly describes the adsorption of iodine on the Pt(1 1 1) surface and support the use of the Hirshfeld method in surface science problems.     

Adsorption of silane and methylsilane on gold surfaces

The adsorption of silane and methylsilane on the (1 1 0) and polycrystalline surfaces of gold is examined using vibrational electron energy loss spectroscopy (VEELS), angle-resolved ultraviolet photoelectron spectroscopy (ARUPS) and X-ray photoelectron spectroscopy (XPS). Adsorption of silane onto the Au(1 1 0) surface at low temperatures is dissociative and yields an SiH₂ and possibly also SiH₃ surface species. Further dissociation occurs at room temperature to yield adsorbed SiH, which is tilted on the surface, with complete dissociation to Si occurring by 110 °C. The similarity in the UP spectra for silane adsorbed on the polycrystalline sample suggests that the same surface species are present over that temperature range. Above 200 °C, spectral changes suggest rearrangement of the Si atoms, which, by 350 °C, have diffused into the bulk. Adsorption of methylsilane onto the (1 1 0) surface at low temperatures initially produces adsorbed CH₃SiH or CH₃SiH₂, with undissociated methylsilane physisorbing at higher exposures. By room temperature, desorption and decomposition leaves (or direct adsorption yields) only adsorbed CH₃Si. After further heating, the hydrogen-carbon bonds of the CH₃ group break to leave an adsorbed SiC species. On the polycrystalline surface, methylsilane adsorption is the same at low temperatures as on (1 1 0). In contrast to the latter, though, the UP spectra indicate that direct exposures at room temperature yield adsorbed Si or SiC initially, with CH₃Si again adsorbing at higher exposures. Upon further heating to 330 °C, little if any methyl-groups remain on the surface and the Si has started to diffuse into the bulk.     

Adsorption and dissociation of O2 on CuCl(1 1 1) surface: A density functional theory study

The adsorption and dissociation of O₂ on CuCl(1 1 1) surface have been systematically studied by the density functional theory (DFT) slab calculations. Different kinds of possible modes of atomic O and molecular O₂ adsorbed on CuCl(1 1 1) surface and possible dissociation pathways are identified, and the optimized geometry, adsorption energy, vibrational frequency and Mulliken charge are obtained. The calculated results show that the favorable adsorption occurs at hollow site for O atom, and molecular O₂ lying flatly on the surface with one O atom binding with top Cu atom is the most stable adsorption configuration. The O-O stretching vibrational frequencies are significantly red-shifted, and the charges transferred from CuCl to oxygen. Upon O₂ adsorption, the oxygen species adsorbed on CuCl(1 1 1) surface mainly shows the characteristic of the superoxo (O₂⁻), which primarily contributes to improving the catalytic activity of CuCl, meanwhile, a small quantity of O₂ dissociation into atomic O also occur, which need to overcome very large activation barrier. Our results can provide some microscopic information for the catalytic mechanism of DMC synthesis over CuCl catalyst from oxidative carbonylation of methanol.     

A density functional theory study of formaldehyde adsorption on ceria

Molecular adsorption of formaldehyde on the stoichiometric CeO₂(1 1 1) and CeO₂(1 1 0) surfaces was studied using periodic density functional theory. Two adsorption modes (strong chemisorbed and weak physisorbed) were identified on both surfaces. This is consistent with recent experimental observations. On the (1 1 1) surface, formaldehyde strongly chemisorbs with an adsorption energy of 0.86 eV to form a dioxymethylene-like structure, in which a surface O lifts from the surface to bind with the C of formaldehyde. A weak physisorbed state with adsorption energy of 0.28 eV was found with the O of formaldehyde interacting with a surface Ce. On the (1 1 0) surface, dioxymethyelene formation was also observed, with an adsorption energy of 1.31 eV. The weakly adsorbed state of formaldehyde on the (1 1 0) surface was energetically comparable to the weak adsorption state on the (1 1 1) surface. Analysis of the local density of states and charge density differences after adsorption shows that strong covalent bonding occurs between the C of formaldehyde and surface O when dioxymethylene forms. Calculated vibrational frequencies also confirm dioxymethylene formation. Our results show that as the coverage increases, the adsorption of formaldehyde on the (1 1 1) surface becomes weak, but is nearly unaffected on the (1 1 0) surface.     

Ab-initio pseudopotential study of electronic structure and chemisorption of oxygen on aluminium surface

Chemisorption of oxygen atom on aluminium (1 1 1), (1 1 0) and (1 0 0) surfaces is studied using ab-initio plane wave pseudopotential method based on density functional theory (DFT). Oxygen atom chemisorbed on three different high symmetry sites; top, short-bridge and hollow sites on the aluminium surfaces are examined. It has been found that the O-adatom adsorbed at the hollow site on aluminium (1 1 1), (1 1 0) and (1 0 0) plane yield energetically most stable structure. Calculation of chemisorption energies of O-adatom on aluminium surfaces shows that oxygen is most strongly bound to aluminium atoms on Al(1 1 1) plane and the calculated value of the chemisorption energy of O-adatom at the hollow site on Al(1 1 1) surface is 4.8 eV. In this work, the chemisorption energies calculated for O-adatom on Al(1 1 0) and Al(1 0 0) surfaces are reported for the first time. The electronic structures and the electronic charge density distributions of the oxygen chemisorbed aluminium surfaces are also investigated. Calculations show that for aluminium, p orbitals also contribute significantly along with the s orbitals during the bond formation with oxygen atom. Therefore, the possibilities of hybridizations lead to the strong bonding configurations.