dl‐Arginine monohydrate at 100 K

In the title compound, C₆H₁₄N₄O₂·H₂O, the α‐amino group is neutral. The molecular side chain including the guanidinium group is not fully extended, having a near gauche–gauche conformation [χ³ = 59.0 (1)°; χ⁴ = 72.8 (1)°]. The network of hydrogen bonds stabilizing the crystal lattice includes those formed between the deprotonated and negatively charged α‐carboxyl­ate groups and the positively charged amino groups of the guanidinium group of neighbouring mol­ecules. N—H?O=C and water‐mediated N—H?O hydrogen bonds link individual mol­ecules to produce pairs of spiral motifs laterally connected by N—H?O and C—H?O hydrogen bonds.     

Adiponitrile at 100 K

Adiponitrile, C₆H₈N₂, is a key intermediate in the synthesis of the polyamide Nylon 66 and is produced industrially on a large scale. We have determined the crystal and molecular structure of adiponitrile by single‐crystal X‐ray analysis at 100 K, a suitable crystal (m.p. 275 K) having been grown from the melt at low temperature. The compound crystallizes in the monoclinic space group P 2₁/c with Z = 2. In the crystal structure, the molecule adopts an exact C_i‐symmetric gauche –anti –gauche conformation of the C—C—C—C skeleton about an inversion centre. The molecules are densely packed, with short intermolecular contacts between the α‐H and nitrile N atoms.     

Two polymorphs of anhydrous 4‐pyridone at 100 K

Two polymorphs of the title compound, C₅H₅NO, (I), have been obtained from ethanol. One polymorph crystallizes in the monoclinic space group C2/c [henceforth (I)‐M], while the other crystallizes in the orthorhombic space group Pbca [henceforth (I)‐O]. In the two forms, the lattice parameters, cell volume and packing motifs are very similar. There are also two independent molecules of 4‐pyridone in each asymmetric unit. The molecules are linked by N—H...O hydrogen bonds into one‐dimensional zigzag chains extending along the b axis in the (I)‐M polymorph and along the a axis in the (I)‐O polymorph, with the graph set C₂²(12). The structures are stabilized by weak C—H...O hydrogen bonds linking adjacent chains, thus forming a ring with the graph set R₆⁵(28). The significance of this study lies in the analysis of the hydrogen‐bond interactions occurring in these structures. Analyses of the crystal structures of the two polymorphs of 4‐pyridone are helpful in elucidating the mechanism of the generation of spectroscopic effects observed in the IR spectra of these polymorphs in the frequency range of the N—H stretching vibration band.     

The low‐temperature phase transition of 9‐methylfluoren‐9‐ol: comparison of the crystal structures at 100 and 200 K

Crystals of 9‐methyl­fluoren‐9‐ol, C₁₄H₁₂O, undergo a reversible phase transition at 176 (2) K. The structure of the high‐temperature α form at 200 K is compared with that of the low‐temperature β form at 100 K. Both polymorphs crystallize in space group P with Z = 4 and contain discrete hydrogen‐bonded R(8) ring tetramers arranged around crystallographic inversion centres. The most obvious changes observed on cooling the crystals to below 176 K are an abrupt increase of ca 0.5 Å in the shortest lattice translation, and a thermal transition with ΔH = 1 kJ mol^?1.     

trans‐4‐Bromo‐ONN‐azoxy­benzene at 100 K

The crystal structure of the α isomer of trans‐4‐bromo­azoxy­benzene [systematic name: trans‐1‐(bromophenyl)‐2‐phenyl­diazene 2‐oxide], C₁₂H₉BrN₂O, has been determined by X‐ray dif­frac­tion. The geometries of the two mol­ecules in the asymmetric unit are slightly different and are within ∼0.02 Å for bond lengths, ∼2° for angles and ∼3° for torsion angles. The azoxy bridges in both mol­ecules have the typical geometry observed for trans‐azoxy­benzenes. The crystal network contains two types of planar mol­ecules arranged in columns. The torsion angles along the Ar—N bonds are only 7 (2)°, on either side of the azoxy group.     

Bis(glycylglycinium) oxalate at 100 K

The structure of the title compound, 2C₄H₉N₂O₃⁺·C₂O₄²⁻, which has been determined by X‐ray diffraction, contains discrete glycyl­glycine (HGly–Gly)⁺ cations in general positions and oxalate anions which lie across centres of inversion. Although the geometry of the (HGly–Gly)⁺ cation is not significantly different compared with other structures containing this residue, a few changes in conformation are observed which indicate the presence of molecular interactions. The molecular network in the crystal consists of one nearly linear O—H⋯O, five N—H⋯O and two weak C—H⋯O hydrogen bonds.     

N‐Benzylformamide at 150 K

The title compound, C₈H₉NO, crystallizes with Z′ = 2. Each type of independent molecule links into a separate N—H...O hydrogen‐bonded chain in the a‐axis direction. There are also three weak C—H...O hydrogen bonds, which join the molecules into a two‐dimensional sheet parallel to (001). The molecules exhibit the trans conformation of the –NHCHO group and an anti conformation around the (Ph)C—NH(CHO) bond. The formamide group in each of the symmetry‐independent molecules is twisted out of the benzyl group plane, forming angles of 75.96 (10) and 65.23 (11)° with this plane. The significance of this study lies in the comparison drawn between the experimental and calculated data of the crystal structure of the title compound and the data of several other derivatives possessing the –CH₂—NH—CO– group. The correlation between the IR spectrum of this compound and the hydrogen‐bond energy is also discussed. This molecular system is of particular interest to biochemists because of its preventative function against toxic products of alcohols in human metabolism.     

4‐Ethynyl‐1,2‐methylenedioxybenzene at 150 K

The title compound, C₉H₆O₂, contains two moderate C—H?O hydrogen bonds. That involving the terminal alkyne gives rise to chains along the b axis. The other hydrogen bond occurs over a centre of symmetry, leading to dimers. The combination of the two interactions gives rise to rings, each comprising six mol­ecules, which are part of infinite sheets in the bc plane.     

1,3,5‐Triiodo‐2,4,6‐trimethylbenzene at 293 K

In the structure of tri­iodo­mesityl­ene (1,3,5‐tri­iodo‐2,4,6‐tri­methyl­benzene), C₉H₉I₃, at 293 K, the benzene ring is found to be significantly distorted from ideal D_6h symmetry; the average endocyclic angles facing the I atoms and the methyl groups are 123.8 (3) and 116.2 (3)°, respectively. The angle between the normal to the molecular plane and the normal to the (100) plane is 5.1°. No disorder was detected at 293 K. The thermal motion was investigated by a rigid‐body motion tensor analysis. Intra‐ and intermolecular contacts are described and topological differences compared with the isomorphous compounds tri­chloro­mesityl­ene and tri­bromo­mesityl­ene are discussed.     

Di‐9‐anthryl disulfide at 193 K

The title compound, C₂₈H₁₈S₂, crystallizes in the monoclinic space group P2₁/n and the structure shows pseudosymmetry close to the space group C2/c. At 193 K the compound has a long S—S bond of 2.1089 (12) Å and the S atom to anthracene bond distances are 1.776 (3) and 1.770 (2) Å. The C—S—S—C torsion angle is 76.06 (13)°.     

Zwitterionic pyrrolidine‐2,2‐diylbis(phosphonic acid) at 100, 150 and 293 K

The title compound, C₄H₁₁NO₆P₂, reveals a two‐dimensional network of P—O—H?O=P and N—H?O=P hydrogen‐bond interactions, forming molecular slabs parallel with the (010) plane. One O—H?O interaction is distinct within these sets: whilst forming the shortest intermolecular hydrogen bond, it possesses a short P—O(H) bond of 1.5291 (10) Å. Weak C—H?O contacts link individual stacks to produce a three‐dimensional array. The compound is zwitterionic: one H atom from a P—O—H group has transferred to the pyrrolidine ring N atom.     

Copper(II) hypophosphite: the α‐ and β‐forms at 270 and 100 K,and the γ‐form at 270 K

Copper(II) hypophosphite has been shown to exist as several polymorphs. The crystal structures of monoclinic α‐, ortho­rhombic β‐ and ortho­rhombic γ‐Cu(H₂PO₂)₂ have been determined at different temperatures. The geometry of the hypophosphite anion in all three polymorphs is very close to the idealized one, with point symmetry mm2. Despite having different space groups, the structures of the α‐ and β‐polymorphs are very similar. The polymeric layers formed by the Cu atoms and the hypophosphite ions, which are identical in the α‐ and β‐polymorphs, stack in the third dimension in different ways. Each hypophosphite anion is coordinated to three Cu atoms. On cooling, a minimum amount of contraction was observed in the direction normal to the layers. The structure of the polymeric layers in the γ‐­polymorph is quite different. There are two symmetry‐independent hypophosphite anions; the first is coordinated to two Cu atoms, while the second is coordinated to four Cu atoms. In all three polymorphs, the Cu atoms are coordinated by six O atoms of six hypophosphite anions, forming tetragonal bipyramids; in the α‐ and β‐polymorphs, there are four short and two long Cu—O distances, while in the γ‐polymorph, there are four long and two short Cu—O distances.     

Barium(II)–2,4‐dinitrophenolate–18‐crown‐6 at 183 K

The title compound, bis(2,4‐dinitrophenolato‐κ²O,O′)(1,4,7,10,13,16‐hexaoxadecane‐κ⁶O)barium(II), [Ba(C₆H₃N₂O₅)₂(C₁₂H₂₄O₆)], is a 1:1 complex of barium(II)–2,4‐di­nitro­phenolate and 1,4,7,10,13,16‐hexaoxa­cyclo­octa­decane (18‐crown‐6). Its structure is located on a crystallographic inversion centre. The temperature dependence of the crystal structure has been studied. The monoclinic β angle of the P2₁/­n space group increases with increasing temperature. The packing structure of the complex is stabilized by intermolecular C—H?O interactions.     

Anisole at 100 K: the first crystal structure determination

The simplest alkyl aryl ether, anisole (methoxybenzene), C₇H₈O, is a feedstock chemical and is widely used in the pharmaceutical industry. The structure of anisole at 100 K, as determined by single‐crystal X‐ray analysis, is reported. A crystal (m.p. 236 K) suitable for X‐ray diffraction was obtained from the melt. The title compound crystallizes in the centrosymmetric space group P2₁/c with two molecules in the asymmetric unit (Z′ = 2). Both crystallographically distinct molecules adopt a virtually flat (C_s‐symmetric) conformation. The arrangement of the molecules in the solid state appears to be governed by close packing. No face‐to‐face π–π stacking of the molecules is observed, but rather edge‐to‐face interactions result in a herringbone packing motif.     

Benz[cd]indol‐2(1H)‐one at 298 and 100 K

Weakly diffracting crystals of benz[cd]indol‐2(1H)‐one (naphtholactam), C₁₁H₇NO, were unsuitable for data collection by early photographic methods. However, a diffractometer data set collected at room temperature in 1989 was solved and refined. The peak scans were broad, and the results indicated disorder or a satellite crystal. Recent data collection (on another crystal from the same sample) with an area detector at 100 K revealed the same disorder, and made it possible to refine two different, more complete, disorder models. Both models assume an occasional 180° rotation of the nearly planar centrosymmetric cis‐lactam dimer. The refinements differ, especially in the anisotropic displacement parameters for the –C(=O)—NH– portion of the molecule. Both models at 100 K give a C—N (`amide') bond distance of 1.38 Å, about 0.04 Å longer than the average distance in saturated γ‐lactams in the Cambridge Structural Database. Cohesive packing interactions between molecules include opposing‐dipole dimers; the packing may explain the 10:1 ratio favoring the major‐occupancy molecule.     

2,4,5,7‐Tetra­methyl­phenanthrene at 150 K

The title compound, C₁₈H₁₈, crystallized in the centrosymmetric space group P2₁/c with one mol­ecule as the asymmetric unit. The methyl‐group H atoms at the 4 and 5 positions are ordered, while those at the 2 and 7 positions are disordered. The torsion of the bay region of the core is notably similar to that of other 4,5‐di­methyl­phenanthrenes. No substantial C—H?π interaction occurs in this structure.     

1,3,4‐Triphenyl‐7‐trifluoromethyl‐1H‐pyrazolo[3,4‐b]quinoline at 293 and 100 K

In the structure of the title compound, C₂₉H₁₈F₃N₃, belonging to the space group P6₅ (or P6₁), three symmetry‐independent molecules are arranged in two chains, with two molecules alternating along the 3₂ axes, whereas the remaining molecule forms a chain along [0001] due to the 6₅ screw axis. The conformation of each of the molecules is stabilized by an intramolecular C—H...N hydrogen bond, with C...N distances in the range 2.964 (6)–3.069 (5) Å at room temperature (293 K) and 2.943 (4)–3.084 (4) Å at low temperature (100 K). One molecule has its –CF₃ group ordered even at 293 K, which can be explained only by considering its involvement in two weak intermolecular C—H...F interactions, with C...F distances in the range 3.084 (6)–3.302 (5) Å at 293 K and 3.070 (3)–3.196 (3) Å at 100 K, and also a C—F...N interaction, with a C...N distance of 3.823 (5) Å at 293 K and 3.722 (4) Å at 100 K. The trifluoromethyl groups in the two remaining molecules are disordered at 293 K, whereas at 100 K the continuous (dynamic) positional disorder of one of the –CF₃ groups (of the molecule forming the chain along [0001]) is totally eliminated while the –CF₃ group disorder remains for the third molecule.     

Redetermination of ternifoline‐C at 150 K

The relative stereochemistry of ternifoline‐C (7,20‐epoxy‐ent‐kaur‐16‐ene‐1,6,7,15‐tetrol 1‐acetate), C₂₂H₃₂O₆, previously reported by Wu [FudanXuebaoZir. Kex. (1988), 27 , 61–65], has been redetermined at 150 K. The molecular geometry and crystal packing agree well with the previous study.     

Acetone‐4‐methyl­thio­semicarbazone at 220 K

In the title compound, C₅H₁₁N₃S, the trans conformation is stabilized by a weak intramolecular N—H?N hydrogen bond. Unusually, one N—H bond is not involved in any hydrogen‐bond interactions and instead the mol­ecules form a one‐dimensional polymer via N—H?S intermolecular hydrogen bonds.     

Low‐temperature study of 3‐acetylindole at 110 K

The title compound, C₁₀H₉NO, contains an acetyl group that is nearly coplanar with the indole ring system, with an angle between the planes of the heterocyclic ring and the acetyl group of 1.75 (17)°. The planes of the benzene and pyrrole rings in the indole system make a dihedral angle of 2.05 (11)°. Each molecule in the unit cell is linked through N—H...O hydrogen bonds to two other molecules, forming hydrogen‐bonded chains in the [101] direction with graph set C(6). The significance of this study lies in the analysis of the interactions occurring via hydrogen bonds in this structure, as well as in the comparison drawn between the molecular structure of the title compound and those of several other indole derivatives possessing a 3‐carbonyl group. The correlation between the IR spectrum of this compound and the structural data is also discussed.