6‐Amino‐2‐(3,4‐di­methoxy­benzyl­amino)‐3‐methyl‐5‐nitro­so­pyrimidin‐4(3H)‐one: hydrogen‐bonded sheets form interdigitated bilayers

Molecules of the title compound, C₁₄H₁₇N₅O₄, exhibit a highly polarized molecular–electronic structure. The mol­ecules are linked into sheets by two N—H⋯O hydrogen bonds [H⋯O = 2.03 and 2.02 Å, N⋯O = 2.836 (2) and 2.887 (2) Å, and N—H⋯O = 153 and 168°], augmented by a single C—H⋯O hydrogen bond [H⋯O = 2.47 Å, C⋯O = 3.403 (2) Å and C—H⋯O = 166°]. Pairs of sheets, related by inversion, form bilayers with interdigitated di­methoxy­benzyl substituents, weakly linked by a further C—H⋯O interaction [H⋯O = 2.50 Å, C⋯O = 3.350 (2) Å and C—H⋯O = 146°].     

3‐[4‐(4‐Fluoro­phenyl)­piperazin‐1‐yl­methyl]‐5‐methyl‐1,3‐benzoxazol‐2(3H)‐one and 3‐[4‐(2‐fluoro­phenyl)­piperazin‐1‐yl­methyl]‐5‐methyl‐1,3‐benzoxazol‐2(3H)‐one

The title compounds, both C₁₉H₂₀FN₃O₂, contain essentially planar benzoxazolinone ring systems, within which the C—N bond distances and angles do not differ significantly between the two compounds. In both cases, the piperazine ring adopts an almost perfect chair conformation and the benzoxazo­l­inone ring system lies nearly perpendicular to it. The structures contain intermolecular C—H⋯O contacts, and the interactions between the benzoxazolinone and fluoro­phenyl­piperazine portions of the mol­ecules are segregated.     

5‐Amino‐3‐methyl‐1‐phenyl‐1H‐pyrazole‐4‐carbaldehyde hemihydrate: a polarized electronic structure within hydrogen‐bonded sheets of R108(34) rings

In the title compound, C₁₁H₁₁N₃O·0.5H₂O, the water molecule lies across a twofold rotation axis in the space group Pbcn. The bond distances in the organic component provide evidence for polarization of the electronic structure. The molecular components are linked into puckered sheets of R₁₀⁸(34) rings by a combination of O—H...N and N—H...O hydrogen bonds; adjacent sheets are weakly linked by an aromatic π–π stacking interaction. Comparisons are made with some fused‐ring analogues.     

(9E)‐9‐Benzylidene‐3‐methyl‐2‐methylsulfanyl‐5‐phenyl‐5,6,7,8,9,10‐hexahydropyrimido[4,5‐b]quinolin‐4(3H)‐one: polarized molecules within hydrogen‐bonded bilayers

The molecules of the title compound, C₂₆H₂₅N₃OS, which was prepared by means of an acid‐catalysed cyclocondensation reaction between a 6‐aminopyrimidinone and 2,6‐dibenzylidenecyclohexanone, exhibit a polarized electronic structure, namely (9E)‐9‐benzylidene‐3‐methyl‐2‐methylsulfanyl‐5‐phenyl‐3,5,6,7,8,9‐hexahydropyrimido[4,5‐b]quinolin‐10‐ium‐4‐olate, involving charge separation in the vinylogous amide portion. Four hydrogen bonds, two each of the C—H...O and C—H...π(arene) types, link the molecules into bilayers comprising inversion‐related pairs of sheets, each containing a single type of R₄³(36) ring.     

A three‐dimensional hydrogen‐bonded framework in 2‐amino‐6‐(N‐methylanilino)pyrimidin‐4(3H)‐one and a ribbon of fused hydrogen‐bonded rings in 2‐amino‐6‐(N‐methylanilino)‐5‐nitropyrimidin‐4(3H)‐one

The molecular dimensions of both 2‐amino‐6‐(N‐methylanilino)pyrimidin‐4(3H)‐one, C₁₁H₁₂N₄O, (I), and 2‐amino‐6‐(N‐methylanilino)‐5‐nitropyrimidin‐4(3H)‐one, C₁₁H₁₁N₅O₃, (II), are consistent with considerable polarization of the molecular–electronic structures. The molecules of (I) are linked into a three‐dimensional framework by a combination of one N—H...N hydrogen bond, two independent N—H...O hydrogen bonds and one C—H...π(arene) hydrogen bond. The molecules of (II) are linked into ribbons containing three types of edge‐fused ring by the combination of two independent three‐centre N—H...(O)₂ hydrogen bonds.     

4‐Amino‐3‐methyl‐6‐phenyl‐1,2,4‐triazin‐5(4H)‐one (metamitron) and 4‐amino‐6‐methyl‐3‐phenyl‐1,2,4‐triazin‐5(4H)‐one (isometamitron)

The title structures, both C₁₀H₁₀N₄O, are substitutional isomers. The N—N bond lengths are longer and the C=N bond lengths are shorter by ca 0.025 Å than the respective average values in the C=N—N=C group of asymmetric triazines; the assessed respective bond orders are 1.3 and 1.7. There are N—H⋯O and N—H⋯N hydrogen bonds in both structures, with 4‐­amino‐3‐methyl‐6‐phenyl‐1,2,4‐triazin‐5(4H)‐one containing a rare bifurcated N—H⋯N,N hydrogen bond. The structures differ in their mol­ecular stacking and the hydrogen‐bonding patterns.     

2‐Amino‐4‐chloro‐5‐formyl‐6‐[methyl(2‐methylphenyl)amino]pyrimidine and 2‐amino‐4‐chloro‐5‐formyl‐6‐[(2‐methoxyphenyl)methylamino]pyrimidine are isostructural and form hydrogen‐bonded sheets of R22(8) and R66(32) rings

2‐Amino‐4‐chloro‐5‐formyl‐6‐[methyl(2‐methylphenyl)amino]pyrimidine, C₁₃H₁₃ClN₄O, (I), and 2‐amino‐4‐chloro‐5‐formyl‐6‐[(2‐methoxyphenyl)methylamino]pyrimidine, C₁₃H₁₃ClN₄O₂, (II), are isostructural and essentially isomorphous. Although the pyrimidine rings in each compound are planar, the ring‐substituent atoms show significant displacements from this plane, and the bond distances provide evidence for polarization of the electronic structures. In each compound, a combination of N—H...N and N—H...O hydrogen bonds links the molecules into sheets built from centrosymmetric R₂²(8) and R₆⁶(32) rings. The significance of this study lies in its observation of the isostructural nature of (I) and (II), and in the comparison of their crystal and molecular structures with those of analogous compounds.     

4,6‐Diamino‐2‐morpholino‐5‐nitrosopyrimidine: a polarized molecular structure within hydrogen‐bonded sheets

In the title compound, C₈H₁₂N₆O₂, the molecular dimensions provide evidence for significant polarization of the electronic structure. There is an intramolecular N—H...N hydrogen bond, and the molecules are linked into complex sheets by a combination of two‐centre hydrogen bonds, one each of the N—H...N and N—H...O types, and a three‐centre N—H...(N,O) hydrogen bond.     

Hydrogen‐bonded dimers in 3‐amino‐4‐anilino‐1H‐isochromen‐1‐one and a hydrogen‐bonded sheet in 3‐amino‐4‐[methyl(phenyl)amino]‐1H‐isochromen‐1‐one

The molecules of 3‐amino‐4‐anilino‐1H‐isochromen‐1‐one, C₁₅H₁₂N₂O₂, (I), and 3‐amino‐4‐[methyl(phenyl)amino]‐1H‐isochromen‐1‐one, C₁₆H₁₄N₂O₂, (II), adopt very similar conformations, with the substituted amino group PhNR, where R = H in (I) and R = Me in (II), almost orthogonal to the adjacent heterocyclic ring. The molecules of (I) are linked into cyclic centrosymmetric dimers by pairs of N—H...O hydrogen bonds, while those of (II) are linked into complex sheets by a combination of one three‐centre N—H...(O)₂ hydrogen bond, one two‐centre C—H...O hydrogen bond and two C—H...π(arene) hydrogen bonds.     

6‐Amino‐3‐methyl‐5‐nitro­so­pyrimi­dine‐2,4(1H,3H)‐dione forms a three‐dimensional hydrogen‐bonded framework structure

Molecules of the title compound, C₅H₆N₄O₃, are linked into a single three‐dimensional framework by a two‐centre N—H⃛O hydrogen bond [H⃛O = 1.92 Å, N⃛O = 2.785 (2) Å and N—H⃛O = 168°], a two‐centre N—H⃛H hydrogen bond [H⃛N = 2.19 Å, N⃛N = 3.017 (2) Å and N—H⃛N = 157°] and the intermolecular component of an effectively planar three‐centre N—H⃛(O)₂ hydrogen bond [H⃛O = 2.03 and 2.31 Å, N⃛O = 2.645 (2) and 2.957 (2) Å, N—H⃛O = 126 and 130°, and O⃛H⃛O = 101°].     

4‐Amino‐5‐(2‐hydroxy‐4,4‐di­methyl‐6‐oxo­cyclo­hexenyl­methyl)‐1‐methyl‐2‐(methyl­sulfanyl)­pyrimidin‐6(1H)‐one: hydrogen‐bonded chains are π‐stacked in pairs

Molecules of the title compound, C₁₅H₂₁N₃O₃S, have a markedly polarized electronic structure; the carbocyclic ring adopts an envelope conformation and the overall molecular conformation appears to be controlled by two intramolecular hydrogen bonds, one each of the O—H⋯O and N—H⋯O types. The mol­ecules are linked into C(6) chains by an intermol­ecular N—H⋯O hydrogen bond, and pairs of these hydrogen‐bonded chains are linked by a π–π stacking interaction.     

2‐Amino‐4‐chloro‐6‐[N‐methyl‐N‐(4‐methylphenyl)amino]pyrimidine: formation versus fragmentation of hydrogen‐bonded chains of edge‐fused R22(8) rings in 4,6‐disubstituted 2‐aminopyrimidines

Molecules of the title compound, C₁₂H₁₃ClN₄, are linked by two independent N—H...N hydrogen bonds into a chain of edge‐fused R₂²(8) rings. The significance of this study lies in its attempt to rationalize the patterns of supramolecular aggregation in the title compound and in a range of analogous 4,6‐disubstituted 2‐aminopyrimidines.     

Synthesis,Characterization and Crystal Structure of Dimeric {[(AMTTO)2Ag]NO3}2 (AMTTO = 4‐Amino‐6‐methyl‐1, 2, 4‐triazine‐3(2H)‐thione‐5‐one)

The reaction of 4‐Amino‐6‐methyl‐1, 2, 4‐triazine‐3(2H)‐thione‐5‐one (AMTTO, 1 ) with silver nitrate in methanol led to the dimeric complex {[(AMTTO)₂Ag]NO₃}₂ ( 2 ). 2 was characterized by elemental analyses and IR spectroscopy as well as by X‐ray structure analysis. Crystal data for 2 at ?80 °C: crystal system orthorhombic, space group P2₁2₁2₁ with a = 1043.6(1), b = 1329.6(1), c = 2358.4(1) pm, Z = 8 and R₁ = 0.037. The cation possesses a highly distorted linear coordination sphere in the solid state.     

(E)‐5‐[Hydroxyimino(phenyl)methyl]‐1‐methyl‐3,4‐dihydro‐2H‐pyrrolium trifluoromethanesulfonate

The cation of the title compound, C₁₂H₁₅N₂O⁺·CF₃SO₃^?, exists as an E‐configured hydroxy­imino derivative conjugated with a nearly planar iminium system. The twist angle between the phenyl ring and the oxime group is 72.2 (2)°. An O—H?O hydrogen bond links the oxime group of the cation to the anion.     

5‐Methyl‐N‐[2‐nitro‐4‐(trifluoromethyl)phenyl]‐1H‐pyrazole‐3‐amine: a chain of hydrogen‐bonded R22(6) and R22(16) rings

The molecular skeleton of the title compound, C₁₁H₉F₃N₄O₂, is almost planar and exhibits a polarized (charge‐separated) electronic structure in the nitroaniline portion. Molecules are linked by N—H...N and C—H...O hydrogen bonds to form a chain in which centrosymmetric R₂²(6) and R₂²(16) rings alternate.     

(E)‐N2‐{4‐[(E)‐2‐(4‐Chlorobenzoyl)ethenyl]‐3‐methyl‐1‐phenyl‐1H‐pyrazol‐5‐yl}‐N1,N1‐dimethylformamidine: polarized molecules within sheets of π‐stacked hydrogen‐bonded chains

The molecules of the title compound, C₂₂H₂₁ClN₄O, are conformationally chiral, and in the space group P2₁2₁2₁ each crystal contains only one conformational enantiomer. The intramolecular dimensions provide evidence for polarization of the electronic structure. Molecules are linked by a single C—H...π(arene) hydrogen bond into chains, which are themselves weakly linked into sheets by an aromatic π–π stacking interaction.     

Supramolecular structures of 5‐[3‐(4‐methyl­phenyl)‐ and 5‐[3‐(4‐chloro­phenyl)‐2‐propenyl­idene]‐2,2‐di­methyl‐1,3‐dioxane‐4,6‐dione

2,2‐Di­methyl‐5‐[3‐(4‐methyl­phenyl)‐2‐propenyl­idene]‐1,3‐di­ox­ane‐4,6‐dione, C₁₆H₁₆O₄, crystallizes in the triclinic space group , with two mol­ecules in the asymmetric unit. These mol­ecules and a centrosymmetrically related pair, linked together by weak C—H?O hydrogen bonds, form a tetramer. 5‐[3‐(4‐Chloro­phenyl)‐2‐propenyl­idene]‐2,2‐di­methyl‐1,3‐dioxane‐4,6‐dione, C₁₅H₁₃ClO₄, also crystallizes in the triclinic space group , with one mol­ecule in the asymmetric unit. Centrosymmetrically related mol­ecules are linked together by weak C—H?O hydrogen bonds to form dimers which are further linked by yet another pair of centrosymmetrically related C—H?O hydrogen bonds to form a tube which runs parallel to the a axis.     

2‐Amino‐5‐nitro‐4,6‐dipiperidinopyrimidinium hydrogen­sulfate monohydrate: hydrogen‐bonded sheets containing highly distorted cations

In the title compound, C₁₄H₂₃N₆O₂⁺·HSO₄⁻·H₂O, the pyrimidinium ring of the cation adopts a twist‐boat conformation, induced by steric clashes between adjacent ring substituents; the anions and the water mol­ecules are linked by three O—H⃛O hydrogen bonds [H⃛O = 1.70–1.78 Å, O⃛O = 2.548 (2)–2.761 (2) Å and O—H⃛O = 161–168°] into chains of edge‐fused R(12) rings, which are linked into sheets by the cations, via three N—H⃛O hydrogen bonds [H⃛O = 1.96–2.17 Å, N⃛O = 2.820 (2)–2.935 (2) Å and N—H⃛O = 145–173°].     

(5Z)‐4‐Amino‐2‐(4‐hydroxyphenyl)‐1H‐imidazol‐5(2H)‐one oxime 3‐oxide

The title molecule, C₉H₁₀N₄O₃, consists of benzene and imidazole rings which are almost perpendicular to each other. A hydroxyimino group is directly linked to the imidazole ring with a double C=N bond, which is the first example in this type of compound. The double bond may be a good location for the initiation of various reactions with a wide range of potential applications. In the crystal structure, there are π–π interactions between molecules related by a centre of symmetry, with the imidazole and benzene rings almost completely overlapped. The molecules are hydrogen bonded in each direction and form a three‐dimensional hydrogen‐bond network.     

Bis­[4‐(2‐pyridyl­methyl­ene­amino)­phenyl] ether

The title compound, C₂₄H₁₈N₄O, is a bis‐bidentate Schiff base ligand exhibiting pseudo‐C₂ symmetry. The mol­ecule is twisted about the central ether linkage and exhibits an imine E configuration. In the crystal, the mol­ecules are linked by weak intermolecular C—H?N hydrogen bonds.