Solution structure and thermolysis of Cobeta-5'-deoxyadenosylimidazolylcobamide, a coenzyme B12 analogue with an imidazole axial nucleoside

The solution structure of Cobeta-5'-deoxyadenosylimidazolylcobamide, Ado(Im)Cbl, the coenzyme B(12) analogue in which the axial 5,6-dimethylbenzimidazole (Bzm) ligand is replaced by imidazole, has been determined by NMR-restrained molecular modeling. A two-state model, in which a conformation with the adenosyl moiety over the southern quadrant of the corrin and a conformation with the adenosyl ligand over the eastern quadrant of the corrin are both populated at room temperature, was required by the nOe data. A rotation profile and molecular dynamics simulations suggest that the eastern conformation is the more stable, in contrast to AdoCbl itself in which the southern conformation is preferred. Consensus structures of the two conformers show that the axial Co-N bond is slightly shorter and the corrin ring is less folded in Ado(Im)Cbl than in AdoCbl. A study of the thermolysis of Ado(Im)Cbl in aqueous solution (50-125 degrees C) revealed competing homolytic and heterolytic pathways as for AdoCbl but with heterolysis being 9-fold faster and homolysis being 3-fold slower at 100 degrees C than for AdoCbl. Determination of the pK(a)'s for the Ado(Im)Cbl base-on/base-off reaction and for the detached imidazole ribonucleoside as a function of temperature permitted correction of the homolysis and heterolysis rate constants for the temperature-dependent presence of the base-off species of Ado(Im)Cbl. Activation analysis of the resulting rate constants for the base-on species show that the entropy of activation for Ado(Im)Cbl homolysis (13.7 +/- 0.9 cal mol(-1) K(-1)) is identical with that of AdoCbl (13.5 +/- 0.7 cal mol(-1) K(-1)) but that the enthalpy of activation (34.8 kcal mol(-1)) is 1.0 +/- 0.4 kcal mol(-1) larger. The opposite effect is seen for heterolysis, where the enthalpies of activation are identical but the entropy of activation is 5 +/- 1 cal mol(-1) K(-1) less negative for Ado(Im)Cbl. Extrapolation to 37 degrees C provides a rate constant for Ado(Im)Cbl homolysis of 2.1 x 10(-9) s(-1), 4.3-fold smaller than for AdoCbl. Combined with earlier results for the enzyme-induced homolysis of Ado(Im)Cbl by the ribonucleoside triphosphate reductase from Lactobacillus leichmannii, the catalytic efficiency of the enzyme for homolysis of Ado(Im)Cbl at 37 degrees C can be calculated to be 4.0 x 10(8), 3.8-fold, or 0.8 kcal mol(-1), smaller than for AdoCbl. Thus, the bulky Bzm ligand makes at best a <1 kcal mol(-1) contribution to the enzymatic activation of coenzyme B(12).     

Electrochemistry of vitamin B12: Part VII. Role of the base-off/base-on reaction in the oxido-reduction in the B12r-B12s couple in non-aqueous solvents

The cyclic voltammetric study of vitamin B_12r in DMSO shows the importance of the base-on/base-off reaction in the electrochemical reduction mechanism. Depending upon the flux of electrons flowing through the system. part of the base-on complex is reduced through prior opening of the nucleotide side-chain which gives rise to the more easily reduced DMSO-Co(II) complex. The quantitative analysis of the variations of the peak heights with the sweep rate allows the thermodynamic and kinetic characterization of the base-on/base-off reactions to be determined. DMSO thus appears as a stronger ligand toward Co(II) than water, leading to an increased participation of the base-off complex in the reduction process. The greater stability of the DMSO complex is also related to the observation that electron transfer is significantly slower than in the case of the water complex. The importance of the ligand exchange reactions in the reduction of B_12r is confirmed by the effect of pyridine additions. Three complexes then participate in the reduction process, their reduction potentials lying in the order DMSO >Py >Bzm. The reduction mechanism involving the interconversion of the three complexes is described as a function of the electrode potential, the flux of electrons and the pyridine concentration. An estimation of the equilibrium and rate constants of the three ligand exchange reactions is made, based on the variations of the cyclic voltammograms with the sweep rate and the pyridine concentration.     

Providing a chemical basis toward understanding the histidine base-on motif of methylcobalamin-dependent methionine synthase: an improved purification of methylcobinamide,plus thermodynamic studies of methylcobinamide binding exogenous imidazole and pyridine bases

Reported herein are the synthesis and improved purification of MeCbi(+).BF(4)(-) leading to 95% pure product. The availability of this higher purity MeCbi(+).BF(4)(-) has, in turn, allowed a study of the K(assoc), DeltaH, and DeltaS for exogenous imidazole and pyridine bases binding to MeCbi(+) in ethylene glycol and buffered aqueous solution. The results show that (1) the bases studied have larger K(assoc) values (where measurable) when binding to MeCbi(+) than when binding to AdoCbi(+) under analogous conditions; (2) comparison of the thermodynamic binding parameters for py and N-MeIm show that these bases bind similarly, within experimental error to MeCbi(+), contrary to what was seen earlier with AdoCbi(+); (3) the bases follow the expected trend, with the base with the highest pK(a) of those studied, 4-Me(2)Npy, exhibiting the highest K(assoc) value (K(assoc)(25 degrees C) = 18.0 +/- 0.3 M(-1)) and the base of lowest pK(a), py, exhibiting the lowest detectable K(assoc) value (K(assoc) (25 degrees C) = 6.2 +/- 0.4 M(-1)); (4) there is no detectable binding (K(assoc) = 0.07 M(-1)) for 2-Mepy or 2,6-Me(2)py with MeCbi(+); and (5) the base that is closest to the biologically relevant axial His759 residue in methionine synthase, N-MeIm, exhibits an unusual DeltaH value for the formation of MeCbi(+).N-MeIm, results interpreted as offering further support for the presence of sigma plus pi effects when imidazole bases bind to alkylcobinamides. The results of these studies allow the percentage of base-on methylcobinamide, MeCbi(+).base, to be calculated as a function of temperature and added base. As such, they provide necessary background information for RS(-) + MeCbi(+).base and other methionine synthase chemical precedent studies.     

Mechanism of the axial ligand substitution reactions on the head-to-tail alpha-pyridonato-bridged cis-diammineplatinum(III) dinuclear complex with olefins

Reactions of the head-to-tail alpha-pyridonato-bridged cis-diammineplatinum(III) dinuclear complex having equivalent two platinum atoms, Pt(N(3)O), with p-styrenesulfonate and 4-penten-1-ol were studied kinetically. Under the pseudo first-order reaction conditions in which the concentration of the Pt(III) dinuclear complex is much smaller than that of olefin, a consecutive basically four-step reaction was observed for the reaction with p-styrenesulfonate, but for the reaction with 4-penten-1-ol, the reaction was three step. The olefin pi-coordinates to one of the two equivalent Pt atoms in the first step (step 1), followed by the second pi-coordination of another olefin molecule to the other Pt atom (step 2). In the next step (step 3), the nucleophilic attack of water to the first pi-coordinated olefin initiates its pi-sigma bond conversion on the Pt atom, and the second pi-bonding olefin molecule on the other Pt atom is released. Finally, dissociation of the alkyl group on the Pt(N(3)O) and reduction of the Pt(III) dinuclear complex to the Pt(II) dinuclear complex occur (step 4). The first water substitution with olefin (step 1) consists of two paths, the reaction of the diaqua dimer complex (path a) and the reaction of the aquahydroxo dimer complex (path b), whereas the second substitution (step 2) proceeds through three reaction paths: the normal path of the direct substitution of H(2)O (path c), the path of the coordinated OH(-) substitution (path d), and the path via the coordinatively unsaturated five-coordinate intermediate (path e). The reaction with p-styrenesulfonate proceeds through paths c, d, and e, whereas the reaction with 4-penten-1-ol proceeds through paths c and d. The third step (step 3) for the reaction with p-styrenesulfonate involves the coordinatively unsaturated intermediate, but that for the 4-pentene reaction does not. The reactivities of the HH dimer and HT dimer with olefins are compared and discussed.     

Coenzyme B12 model studies: An HSAB approach to the equilibria and kinetics of axial ligation of alkyl(aquo)-cobaloximes by imidazole and cyanide

Kinetics and equilibria of the axial ligation of alkyl(aquo)cobaloximes by imidazole and cyanide have been measured spectrophotometrically in aqueous solutions of ionic strength 1.0 M at 25°C as a function of pH. Comparison of K_IMD and K_CN- of CH₃, C₂H₅ and BrCH₂cobaloximes indicates that their stability is in the order BrCH₂>CH₃>C₂H₂. As the electron-withdrawing capacity of the alkyl grouptrans to water increases, the electron density of the cobalt(III) decreases and thus it becomes a stronger Lewis acid and binds more strongly to imidazole and cyanide. The association and dissociation rate constants are better correlated to the relative softness of the ligand showing that cyanide binds 30 times faster than imidazole. These complexes are isolated and are characterized by IR and¹H NMR spectra.     

Thermodynamic and kinetic studies on the reaction between the vitamin B12 derivative beta-(N-methylimidazolyl)cobalamin and N-methylimidazole: ligand displacement at the alpha axial site of cobalamins

The equilibria and kinetics of substitution of the 5,6-dimethylbenzimidazole at the alpha site of beta-(N-methylimidazolyl)cobalamin by N-methylimidazole have been investigated, and the product, bis(N-methylimidazolyl)cobalamin, has been characterized by visible and 1H NMR spectroscopies. The equilibrium constant for (N-MeIm)Cbl+ + N-MeIm right harpoon over left harpoon (N-MeIm)2Cbl+ was determined by 1H NMR spectroscopy (9.6 +/- 0.1 M(-1), 25.0 degrees C, I = 1.5 M (NaClO4)). The observed rate constant for this reaction exhibits an unusual inverse dependence on N-methylimidazole concentration, and it is proposed that substitution occurs via a base-off solvent-bound intermediate. Activation parameters typical for a dissociative ligand substitution mechanism are reported at two different N-MeImT concentrations, 5.00 x 10(-3) M (DeltaH++ = 99 +/- 2 kJ x mol(-1), DeltaS++ = 39 +/- 5 J x mol(-1) x K(-1), DeltaV++ = 15.0 +/- 0.7 cm3 x mol(-1), and 1.00 M (DeltaH++ = 109.4 +/- 0.8 kJ x mol(-1), DeltaS++ = 70 +/- 3 J x mol(-1) x K(-1), DeltaV++ = 16.8 +/- 1.1 cm3 x mol(-1)). According to the proposed mechanism, these parameters correspond to the equation of (N-MeIm)2Cbl+ and the ring-opening reaction of the alpha-DMBI of (N-MeIm)Cbl+ to give the solvent-bound intermediate in both cases, respectively.     

Equilibrium and kinetic studies on ligand substitution reactions of chloromethyl(aquo)cobaloxime with aromatic and aliphatic N-donor ligands

Equilibria and kinetics of the reactions of chloromethyl(aquo)cobaloxime with histamine, histidine, glycine and ethyl glycine ester were studied as a function of pH at 25°C, 10 M ionic strength (KCl) by spectrophotometric techniques. Comparison of equilibrium constants and rate constants tells that the order isK _Hisdn >K _Hiamn >K _Gly >K _EtGlyest. The rate of substitution of H₂O varies with the pKa of the incoming ligand and nucleophilic participation of the ligand in the transition state. The rate constants and equilibrium constants are correlated to the hardness and softness of the ligands and the Co(III) of cobaloxime.     

Kinetic and thermodynamic studies on the adsorption behavior of Rhodamine B dye on Duolite C-20 resin

The adsorption behavior of Rhodamine B dye from aqueous solutions was investigated onto the cation-exchange resin, Duolite C-20 (hydrogen form). The effects of various experimental factors; sorbent amount, contact time, dye concentration and temperature, were studied by using the batch technique. Lagergren pseudo-first-order equation shows good applicability with high correlation coefficients for all ranges of initial dye concentrations and at different temperatures. This equation was used to describe the kinetics of the dye adsorption process. The adsorption constants were evaluated by using both the Langmuir and Freundlich adsorption isotherm models. Thermodynamic parameters were obtained and it was found that the adsorption of Rhodamine B dye onto Duolite C-20 resin was an endothermic and spontaneous process at the temperatures under investigation.     

Kinetic studies of the reactions of IO,BrO, and ClO with dimethylsulfide

The kinetics of the reactions of IO, BrO, and ClO with DMS have been investigated at 298 K and total pressures of 0.5–6.8 mbar He using the discharge flow-mass spectrometry technique to monitor the halogen oxide radicals. Rate coefficients of (8.8 ± 2.1) × 10^?15, (2.7 ? 0.5) × 10^?13 and (9.5 ± 2.0) × 10^?15 cm³ molecule^?1 s^?1 have been obtained for the reactions of IO, BrO, and ClO with DMS, respectively. The result for IO with DMS is in good agreement with two other recent studies on this reaction but is nearly three orders of magnitude slower than two earlier studies, one of which was from this laboratory. The earlier studies are now thought to be in error because of heterogeneous and secondary chemistry occurring in the systems investigated. The rate coefficient for BrO with DMS is in excellent agreement with a previously reported preliminary value from this laboratory. However, the rate coefficient for ClO with DMS is a factor of 4 lower than our previously determined value. The new data are considered more reliable in view of the much improved experimental technique in the present study. DMSO was detected as a product in all of these reactions. A semi-quantitative determination of the DMSO yield was only possible in the case of the reaction of IO with DMS where a yield of 84 ± 40% was found.     

Kinetic and spectroscopic studies of the substitution reactions of [Rh(acac)(CO)2] with triphenylphosphite

Summary The substitution reactions of [Rh(acac)(CO)₂] with triphenylphosphite (P) to produce [Rh(acac)(CO)P], [Rh(acac)P₂] and [PhP₃P], were studied in detail using spectroscopic (n.m.r., i.r. and u.v.-vis.) and kinetic techniques. The kinetic data demonstrate that the first substitution process is very fast and followed by the rate-determining second step. The subsequent loss of acac is relatively slow. The activation enthalpy for the formation of [Rh(acac)P₂] is extremely low and possibly accounts for the catalytic nature of this system in hydrogenation and hydroformylation reactions.     

Kinetic studies of OH reactions with Iso-propyl,Iso-butyl,Sec-butyl,and Tert-butyl acetate

The temperature dependence of the rate coefficients for the OH radical reactions with iso-propyl acetate (k₁), iso-butyl acetate (k₂), sec-butyl acetate (k₃), and tert-butyl acetate (k₄) have been determined over the temperature range 253–372 K. The Arrhenius expressions obtained are: k₁=(0.30±0.03)×10⁻¹² exp[(770±52)/T]; k₂=(109±0.14)×10⁻¹² exp[(534±79)/T]; k₃=(0.73±0.08)×10⁻¹² exp[(640±62)/T]; and k₄=(22.2±0.34)×10⁻¹² exp[−(395±92)/T] (in units of cm³ molecule⁻¹ s⁻¹). At room temperature, the rate constants obtained (in units of 10⁻¹² cm³ molecule⁻¹ s⁻¹) were as follows: iso-propyl acetate (3.77±0.29); iso-butyl acetate (6.33±0.52); sec-butyl acetate (6.04±0.58); and tert-butyl acetate (0.56±0.05). Our results are compared with the previous determinations and discussed in terms of structure-activity relationships. © 1997 John Wiley & Sons, Inc. Int J Chem Kinet: 29: 683–688, 1997.     

Mechanistic studies on the interaction of reduced cobalamin (vitamin B12r) with nitroprusside

The electron-transfer reaction between reduced cobalamin (Cbl(II)) and sodium pentacyanonitrosylferrate(II) (sodium nitroprusside, NP), as well as the subsequent processes following the electron-transfer step, were investigated by spectroscopic (UV-vis, (1)H NMR, EPR), electrochemical (CV, DPV) and kinetic (stopped-flow) techniques. In an effort to clarify the complex reaction pattern observed at physiological pH, systematic spectroscopic and kinetic studies were undertaken as a function of pH (1.8-9) and NP concentration (0.0001 - 0.09 M). The kinetics of the electron-transfer reaction was studied under pseudo-first-order conditions with respect to NP. The reaction occurs in two parallel paths of different order, viz. pseudo-first and pseudo-second order with respect to the NP concentration, respectively. The contribution of each path depends on pH and the [NP]/[Cbl(II)] ratio. At low pH and total NP concentration (pH < 3, [NP]/[Cbl(II)] approximately 1), the cyano-bridged successor complex [Cbl(III)-(mu-NC)-Fe(I)(CN)(3)(NO(+))](-) (1(s)()) is the final reaction product formed in an inner-sphere electron transfer reaction that is coupled to the release of cyanide from coordinated nitroprusside. At higher pH, subsequent reactions were observed which involve the attack of cyanide released in the electron transfer step on the initially formed cyano-bridged species, and lead to the formation of Cbl(III)CN and [Fe(I)(CN)(4)(NO(+))](2)(-). The strong dependence of the rate and mechanism of the subsequent reactions on pH is attributed to the large variation in the effective nucleophilicity of the cyanide ligand in the studied pH range. An alternative electron-transfer pathway observed in the presence of excess NP involves the reaction of the precursor complex [Cbl(II)-(mu-NC)-Fe(II)(CN)(4)(NO(+))](2)(-) (1(p)()) with NP to give [Cbl(III)-(mu-NC)-Fe(II)(CN)(4)(NO(+))](-) (2) and reduced nitroprusside, [Fe(CN)(5)NO](3)(-), as the initial reaction products. Analysis of the kinetic data allowed elucidation of the rate constants for the inner- and outer-sphere electron-transfer pathways. The main factors which influence the kinetics and thermodynamics of the observed electron-transfer steps are discussed on the basis of the spectroscopic, kinetic and electrochemical results. A general picture of the reaction pathways that occur on a short (s) and long (min to h) time scale as a function of pH and relative reactant concentrations is derived from the experimental data. In addition, the release of NO resulting from the one-electron reduction of NP by Cbl(II) was monitored with the use of a sensitive NO electrode. The results obtained in the present study are discussed in reference to the possible influence of cobalamin on the pharmacological action of nitroprusside.     

Adsorption of organochlorine pesticides on modified porous Al30/bentonite: Kinetic and thermodynamic studies

Adsorption of pesticides (heptachlor epoxide, dieldrin and endrin) onto modified bentonite by Keggin cation [Al₃₀O₈(OH)₅₆(H₂O)₂₄]¹⁸⁺ denoted Al₃₀ cation to form composite (Al₃₀/B), has been investigated as a possible alternative method for their removal from aqueous solutions. The study was aimed to use a low-cost material as a step towards cleaner environment. Interestingly, these chemical modifications altered the physicochemical characteristics of bentonite in term of morphology, surface area and functionality which has been confirmed by using nitrogen adsorption–desorption isotherm, scanning electronic microscopy (SEM) and X-ray diffraction (XRD). Gas chromatography coupled to mass spectrometry (GC–MS) was used to identify and analyze the pesticides. Different physicochemical parameters were analyzed: contact time, adsorbent dose, pH, and temperature. The results showed that the removal percentage of pesticides on Al₃₀/B was the highest at contact time of 5 h, adsorbent dosage of 25 mg, at pH 7.5, and at optimum temperature of 45 °C. Furthermore, the Kinetic study indicated that the adsorption of pesticides on Al₃₀/B was well adapted to the pseudo-first order kinetic with a correlation coefficient near unity. The results of adsorption were fitted to the Langmuir and Freundlich isotherms. The Freundlich model represented the adsorption process better than Langmuir model, with correlation coefficients (R²) values range from 0.986 to 0.989. The Thermodynamic study suggested that the adsorption of pesticides was chemisorption, spontaneous and endothermic process. Therefore, Al₃₀/B composite can be utilized effectively for removal of pesticides with efficiency up to 98%.