DFT和热力学研究氢键协同效应及对关联1H NMR的影响

用DFT方法在B3LYP／6—311 G(d,p)水平下研究了甲醇线性和环状分子簇．对于不同大小的分子簇之间定义了协同因子,计算得到的协同因子可以验证氢键的强协同效应,环状分子簇之间的协同效应远远大于线性分子簇,做为理论验证和比较,热力学模型分别采用含氢键缔合的格子流体状态方程(LFHB),以及含氢键协同效应的LFHB,关联醇一惰性体系的^1H核磁共振化学位移．考虑协同效应的关联结果优于原始的LFHB,比较量子化学计算的和热力学模型中采用的协同因子,认为甲醇和乙醇在溶液中更可能大部分以线性缔合形式存在。     

基于LFHB 理论模型关联和预测醇+惰性溶剂的1H NMR 化学位移

运用含氢键缔合的格子流体状态方程(LFHB), 仅用一个参数关联了一元醇-惰性溶剂共17个体系29套1H NMR化学位移数据. 并且用关联参数成功预测了不同温度下丁醇+环己烷的化学位移. 所得结果与化学缔合理论的结果进行了比较. 对于某些体系在稀浓度范围LFHB的计算氢键缔合度要低于化学缔合理论的结果. 并且分析了LFHB理论中的物理参数和化学参数对于缔合度计算的不同影响.     

氢键的协同效应与超加和性的理论研究

采用3种DF方法和MP2方法,6-31++G**基组对线性和环状(HF)_n分子簇(n=1~5)进行了详细的理论研究.计算结果表明,在(HF)_n分子簇(n=1~5)中氢键有很强的协同效应和超加和性.另外,计算结果也表明在同样的计算精度下,DF方法可以大大地节省计算时间.因此,采用其中的一种DF方法计算了更大的线性(HF)_n分子簇(n=6,9,12,18,24),发现 (HF)_n分子簇氢键的协同效应和超加和性在n>12时明显收敛,n=24时已接近极限,此时的计算结果与实验中得到的固体HF数据符合较好.     

多肽中氢键强度的理论研究

用B3LYP/6-31G^*法优化了多肽分子的几何构型,计算了各个构型的电荷分布和氢键酸度,进而对多肽分子中的氢键强度进行了研究.结果表明,多肽分子中氢键的强度同时取决于形成氢键的H…O原子间距R和N-H…O之间的键角β;多肽分子倾向于形成R值小、β值大的大环氢键.3₁₀螺旋结构的多肽分子中的氢键具有协同效应,分子越大,分子中氢键越多,氢键的协同效应越强.     

1,2,4-三氮杂苯-(H2O)n复合物氢键相互作用的密度泛函理论研究

用密度泛函理论方法在B3LYP/6-31++G**水平上对1,2,4-三氮杂苯-(H₂O)_n (n＝1, 2, 3)氢键复合物的基态进行了结构优化和能量计算, 结果表明复合物之间存在较强的氢键作用, 所有稳定复合物结构中形成一个N…H—O氢键并终止于弱O…H—C氢键的氢键水链的构型最稳定. 同时, 用含时密度泛函理论方法(TD-DFT)在TD-B3LYP/6-31++G**水平上计算了1,2,4-三氮杂苯单体及其氢键复合物的单重态第一¹(n, π^*)垂直激发能.     

N-烷基吡啶阳离子及其与若干阴离子形成的离子对结构的理论研究

采用密度泛函理论方法, 在B3LYP/6-31＋G(d) 水平上研究了吡啶、N-烷基吡啶阳离子及其与若干阴离子(F^－, Cl^－, Br^－, , )形成的离子对的稳定构型. 计算结果表明: N-烷基吡啶阳离子的吡啶环与中性吡啶分子类似, 具有芳香性, 烷基对吡啶环结构影响不大; 离子对中阴离子易出现在吡啶环上方以及C(5)—H 或C(2)—H 和 N-甲基附近; 阴、阳离子之间通常存在多重氢键, 并且均有部分电荷转移; 离子对的相互作用能随着N-烷基的增长而减小.     

s-四嗪-水簇复合物的理论研究

用量子化学B3LYP方法和6-31＋＋G**基函数研究了s-四嗪-水簇复合物基态分子间相互作用, 并进行了构型优化和频率计算, 分别得到无虚频稳定的s-四嗪-(水)₂复合物、s-四嗪-(水)₃复合物和s-四嗪-(水)₄复合物6个、9个和12个. 复合物存在较强的氢键作用, 复合物结构中形成一个N…H—O氢键并终止于O…H—C氢键的氢键水链构型最稳定. 经基组重叠误差和零点振动能校正后, 最稳定的1∶2, 1∶3和1∶4(摩尔比)复合物的结合能分别是41.35, 70.9和 94.61 kJ/mol. 振动分析显示氢键的形成使复合物中水分子H—O键对称伸缩振动频率减小(红移). 研究表明N…H键越短, N…H—O键角越接近直线, 稳定化能越大, 氢键作用越强. 同时, 用含时密度泛函理论方法在TD-B3LYP/6-31＋＋G**水平计算了s-四嗪单体及其氢键复合物的第一¹(n, p*)激发态的垂直激发能.     

三接触弯曲构型的蓝移氢键CH3…Y的理论研究

运用量子化学从头算方法, 在MP2/6-311＋＋G(d,p), MP2/6-311＋＋G(2df,2p), MP2/6-311＋＋G(3df,3pd)和QCISD/6-311＋＋G(d,p)水平上, 研究了CH₃F, CH₃Cl和CH₃Br作为质子给体与Cl^－, Br^－作为质子接受体形成的氢键CH₃…Y. 计算结果表明: 6种复合物中C—H键收缩, 伸缩振动频率增大, 形成蓝移氢键. 分子中原子(Atoms in Molecules, AIM)分析表明, 这些复合物的电子密度拓扑性质与普通氢键有着本质的不同, 在Y…H之间不存在键临界点, 而在Y与C之间存在键临界点, 因此这些相互作用严格地不能称为氢键. 自然键轨道(Natural bond orbital, NBO)分析表明, 在这些复合物中弯曲的CH…Y的特殊结构使得分子间超共轭n(Y)®σ*(C—H)减小到可以忽略; 质子接受体的电子密度没有转移到σ*(C—H)上, 而是转移到了σ*(C—X) (X＝F, Cl, Br)上; 存在一定程度的重杂化; 分子内超共轭相互作用减小使得σ*(C—H)的电子密度减少. 这些因素共同导致C—H伸缩振动频率的蓝移.     

CH3SH和CH3SLi分子间的锂键和氢键共存型相互作用

在CH₃SLi＋CH₃SH势能面上求得锂键和氢键共存型复合物的两种稳定构型. 频率分析表明, 与单体相比复合物中S(5)—Li(6)键伸缩振动频率发生红移, 而C(8)—H(10)键伸缩振动频率发生蓝移. 经B3LYP/6-311＋＋G**, MP2/6-311＋＋G**及MP2/AUG-CC-PVDZ水平计算的含基组重叠误差(BSSE)校正的复合物?中相互作用能分别为－58.99, －57.87和－62.89 kJ•mol^－1. 采用自然键轨道(NBO)理论, 分析了复合物中单体轨道间的电荷转移, 电子密度重排及其与相关键键长变化的本质等. 采用分子中的原子(AIM)理论分析了复合物中氢键和锂键的电子密度拓扑性质．在极化连续模型(PCM)下, 考察了溶剂化效应. 结果表明, 所考察的水、二甲亚砜、乙醇和乙醚等四种溶剂均使单体间的相互作用能增大, 且溶剂对复合物中的锂键结构及其振动频率具有显著的影响, 而对复合物中的氢键的振动频率影响不大.     

缔合溶液热力学性质与谱学性质的关联

缔合溶液具有与理想溶液显著不同的热力学和谱学性质,对于热力学和谱学的研究,有助于我们理解缔合溶液的特殊行为.谱学技术中核磁共振(NMR)、红外(IR)和拉曼(Raman)光谱是研究分子间相互作用和溶液结构等微观性质的有效方法,谱学已成为分子热力学研究体系"四面体结构"中的第四个顶点.本文对缔合溶液中热力学(汽液平衡和焓)和谱学(NMR,IR和Raman)联系的最新研究进展进行了综述,着重介绍相关的模型,如化学缔合模型、局部组成(LC)、格子流体氢键(LFHB)理论以及统计缔合流体理论(SAFT).     

拓扑指数与烷烃色谱保留指数的定量相关研究

基于分子图论, 计算了64个链烷烃的一阶连接性指数(¹χ)和奇偶指数(OEI), 并对气相色谱保留指数进行定量结构-性质相关(QSPR)研究, 得到多元线性回归模型RI＝55.7631＋25.7317OEI＋111.4508¹χ (R²＝0.9960, RMS＝9.36, ARD＝1.02%). 交叉验证和预测结果表明, 所建立的QSPR模型具有良好的稳定性和预测能力. 与文献结果比较, 本文所用的参数少, 且计算简便.     

Characterization of degradation products of poly[(3,3,3-trifluoropropyl)methylsiloxane] by nuclear magnetic resonance spectroscopy, mass spectrometry and gas chromatography

Poly[(3,3,3-trifluoropropyl)methylsiloxane] (PTFPMS) was treated with the solvents acetone, ethyl acetate and methanol and its degradation products were analyzed with multiple techniques. ¹H, ²⁹Si and ¹⁹F nuclear magnetic resonance (NMR) spectroscopy were useful for the characterization of the intact polymers and for the determination of cyclosiloxanes. Cyclosiloxanes with a ring size of up to 23 were quantified by gas chromatography. The only degradation products found were TFPmethyl-cyclosiloxanes. 1,3,5,7-Tetrakis(TFPmethyl)-cyclotetrasiloxane was predominant, and (TFPmethyl)cyclotri-, penta- and hexasiloxane could be detected at lower concentrations. The identity of cyclic degradation products with a ring size of up to 6 was unambiguously confirmed by direct infusion mass spectrometry. The TFPmethyl-cyclosiloxanes were successfully ionized by electrospray ionization in the negative mode. None of the techniques applied gave hints to other degradation products such as short linear oligomers. Almost complete degradation of PTFPMS occurred in acetone and methanol, while degradation is distinctly reduced in ethyl acetate.     

鲱鱼精DNA修饰纳米金催化Fehling反应——共振散射光谱法检测痕量Hg2＋

用鲱鱼精DNA (hsDNA)修饰10 nm的纳米金制备了Hg^2＋的hsDNA修饰纳米金共振散射光谱探针(AuhsDNA). 在pH 7.0 Tris-HCl缓冲溶液中及0.017 mol/L NaCl存在下, Hg^2＋与AuhsDNA形成稳定的Hg^2＋-DNA结合物, 引起AuhsDNA中的纳米金析出并聚集形成纳米金簇. 该溶液用150 nm滤膜过滤后, 滤液中过量的AuhsDNA可催化Fehling试剂-葡萄糖反应生成氧化亚铜微粒, 该微粒在580 nm处有一个较强的共振散射峰. 随着汞离子浓度增大, 形成的纳米金簇越多, 滤液中AuhsDNA越少, 生成的氧化亚铜微粒减少, 580 nm处氧化亚铜微粒的共振散射光强度线性降低, 其共振散射光强度降低值?I₅₈₀ nm与汞离子浓度在1～833 nmol/L范围内成线性, 回归方程、相关系数、检出限分别为 ?I_{580 nm}＋0.9, 0.9990, 0.3 nmol/L Hg^2＋. 该法用于废水中Hg^2＋的检测.     

核酸适体修饰纳米金共振散射光谱探针快速检测痕量Pb2＋

以柠檬酸三钠做稳定剂, 用硼氢化钠还原氯金酸制备了粒径为5 nm的纳米金. 用铅离子核酸适体aptamer保护纳米金获得了检测铅离子的适体纳米金(aptamer-NG)共振散射光谱探针. 在pH 7.0的Na₂HPO₄-NaH₂PO₄缓冲溶液中及30 mmol•L^－1 NaCl存在下, aptamer-NG稳定而不聚集. Pb^2＋可与该探针中的aptamer形成非常稳定的G-四分体结构, 并释放出纳米金. 在NaCl作用下纳米金聚集形成较大的微粒, 导致552 nm处共振散射峰强度增大. Pb^2＋浓度在0.07～42 nmol•L^－1范围内与552 nm处共振散射强度增大值ΔI成线性关系, 其回归方程为ΔI＝12.0c＋9.2, 线性相关系数为0.9965, 方法检出限为0.03 nmol•L^－1 Pb^2＋. 该方法用于水样中铅离子检测, 结果与石墨炉原子吸收光谱法结果一致.     

Polymerization of Bis(Pyridine)bis-(2,4,6-tribromophenoxo)copper(II) Complex (Py2Cu(TBrP)2) by Electrooxidation and Structural Characterization by 1H-NMR, 13C-NMR,and FTIR Spectroscopies

Abstract

Electroinitiated polymerization of bis(2,4,6-tribromophenoxo)- bis(pyridine)copper(II) complex was achieved in dimethylformamide-tetrabutylammonium tetrafluoroborate solvent-electrolyte couple under air or nitrogen at room temperature by constant potential electrolysis. Polymerization conditions were based on the peak potentials measured by cyclic voltammetry. The structural analyses of the polymers were done by ¹H-NMR, ¹³C-NMR, and FTIR spectral analyses along with molecular weight measurements by cryoscopy. The poly(dibromo phenylene oxide)s obtained only at oxidation potentials in either atmosphere were found to be highly linear, indicating mainly 1,4-catenation was taking place.     

Exploration of the (ethanol)4–water heteropentamers potential energy surface by simulated annealing and Ab initio molecular dynamics

A DFT electronic structure study of the (ethanol)₄–water heteropentamers at the B3LYP/6‐31+G(d) model chemistry was carried out. To get determine possible configurations, the potential energy surface (PES) was explored with two methods: simulated annealing and ab initio molecular dynamics. The results suggest that the PES is very flat. A total of 81 stable structures were determined. These structures were classified into 16 different geometric patterns according to geometric criteria like the number of hydrogen bonds and their spatial arrangement: cyclic, bicyclic, or lineal patterns. Thermodynamic stability was used for defining the order of such classification. Hydrogen bonds are mutually disturbed due to the existence of cooperative effects. Cooperativity affects the nature of the hydrogen bonds and the overall stability of the ethanol–water system given that the strongest interactions are markedly covalent and the most stable geometric pattern corresponds to the pentagonal arrangement. These observations were supported by the analysis of the loss of atomic charge of the hydrogen atoms involved in hydrogen bonds. These hydrogen bonds were classified as primary and secondary hydrogen bonds: O? H ··· O and C? H ··· O, respectively. For comparative purposes, some (ethanol)₅, (methanol)₅, and (methanol)₄–water clusters were characterized in this study. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Characterization and application of humic acid modified carbon electrodes

Four routes for the modification of carbon electrodes with humic acids and the determination of three divalent metallic cations were studied. The determination of bound Fe²⁺, Cu²⁺ and Ni²⁺ was performed by cyclic and square wave voltammetry using either a batch or flow analysis system. Using the FIA system and SWV, linear relationships between the oxidation (or reduction) current and the cations concentration were obtained with the modified electrodes, while no signals were obtained for the same conditions for bare carbon electrodes. The system can be used to study the interaction between a wide range of electroactive cations and humic substances; however, the performance as an analytical tool is limited due to the high limits of detection (μM). However, some advantages like simplicity, short analysis time, inexpensive instrumentation needs and miniaturization capabilities are remarkable.     

Theoretical investigation of gas phase ethanol–(water)n (n = 1–5) clusters and comparison with gas phase pure water clusters (water)n (n = 2–6)

Various properties (such as optimal structures, structural parameters, hydrogen bonds, natural bond orbital charge distributions, binding energies, electron densities at hydrogen bond critical points, cooperative effects, and so on) of gas phase ethanol–(water)_n (n = 1–5) clusters with the change in the number of water molecules have been systematically explored at the MP2/aug‐cc‐pVTZ//MP2/6‐311++G(d,p) computational level. The study of optimal structures shows that the most stable ethanol‐water heterodimer is the one where exists one primary hydrogen bond (O? H…O) and one secondary hydrogen bond (C? H …O) simultaneously. The cyclic geometric pattern formed by the primary hydrogen bonds, where all the molecules are proton acceptor and proton donor simultaneously, is the most stable configuration for ethanol–(water)_n (n = 2–4) clusters, and a transition from two‐dimensional cyclic to three‐dimensional structures occurs at n = 5. At the same time, the cluster stability seems to correlate with the number of primary hydrogen bonds, because the secondary hydrogen bond was extremely weaker than the primary hydrogen bond. Furthermore, the comparison of cooperative effects between ethanol–water clusters and gas phase pure water clusters has been analyzed from two aspects. First of all, for the cyclic structure, the cooperative effect in the former is slightly stronger than that of the latter with the increasing of water molecules. Second, for the ethanol–(water)₅ and (water)₆ structure, the cooperative effect in the former is also correspondingly stronger than that of the latter except for the ethanol–(water)₅ book structure. © 2012 Wiley Periodicals, Inc.     

Simultaneous mixture analysis by using non-linear spectrophotometric data and linear iterative target transformation factor analysis

Non-linear absorption spectral data obtained from ternary mixtures of analytes are analyzed by using a linear model, iterative target transformation factor analysis (ITTFA). The use of transformed original variables is used to correct non-linearities in the original data. Absorbance below a certain limit (k) is described as linear and above this limit as non-linear. The extension of the regressor variables is the squared absorbances above the linear range. The variation of the prediction error as a function of the number of the factors and the k-values were considered and the minimum prediction error was evaluated for reaching to optimum. Except the natural non-negativity constraint the correlation constraint also is used on concentration vector in each iteration of ITTFA algorithm. The reliability of the method is evaluated using model data for ternary mixtures by spectral overlapping and different degrees of non-linearity. Simultaneous spectrophotometric determination of Eu³⁺, UO₂²⁺ and Th⁴⁺ with arsenazo III as chromogenic reagent is used as experimental model systems with non-linearity behavior of Eu³⁺and UO₂²⁺ components. The application to both synthetic and real data sets with different degrees of non-linearity demonstrate the ability of the proposed methodology to obtain better results than original data and ITTFA. The relative standard errors of prediction for proposed method in comparison with using the PLS calibration on original and extended data are nearly smaller.