The Spermine–Bisaryl Conjugate as a Potent Inducer of B‐ to Z‐DNA Transition

DNA containing alternating purine and pyrimidine repeats has the potential to adopt the Z‐DNA structure, one of the well‐studied structures besides A‐ and B‐DNA. Despite a number of molecular models that have been proposed to explain the mechanism for B→Z transition, there is continued discussion on the mechanism and physiological role of this transition. In this study, we have found that the bis(2‐naphthyl)‐maleimide–spermine conjugate ( 3 c ) exhibits a remarkable ability to cause the B→Z transition of d(CGCGCG)₂ at low salt concentrations. Using isothermal titration calorimetry (ITC) we show that the B→Z transition induced by 3 c is both enthalpically and entropically favorable. The ligand might effect the dehydration of B‐DNA, which leads to the B→Z transition. Interestingly, an intermediate CD between the B and Z forms was observed in the pH‐dependent transition in the presence of the ligand. The unique structure and characteristics of the ligand designed in this investigation will be useful for the study of Z‐DNA.     

Cobalt‐Catalyzed Z‐Selective Hydrosilylation of Terminal Alkynes

A cobalt‐catalyzed Z ‐selective hydrosilylation of alkynes has been developed relying on catalysts generated from bench‐stable Co(OAc)₂ and pyridine‐2,6‐diimine (PDI) ligands. A variety of functionalized aromatic and aliphatic alkynes undergo this transformation, yielding Z ‐vinylsilanes in high yields with excellent selectivities (Z /E ratio ranges from 90:10 to >99:1). The addition of a catalytic amount of phenol effectively suppressed the Z /E ‐isomerization of the Z ‐vinylsilanes that formed under catalytic conditions.     

Air‐Stable Cationic Gold(I) Catalyst Featuring a Z‐Type Ligand: Promoting Enyne Cyclizations

An air‐stable cationic Au^I complex featuring a Z‐type ligand (boron atom) as a σ‐acceptor was developed for elucidating the effect of B on catalytic reactions. An enyne cyclization in the presence of either [Au→B]⁺ or [Au]⁺ showed that [Au→B]⁺ promotes the reactivity, which enabled the effective construction of not only five‐ and six‐membered rings, but also seven‐membered rings.     

Semiconductor/Covalent‐Organic‐Framework Z‐Scheme Heterojunctions for Artificial Photosynthesis

A strategy to covalently connect crystalline covalent organic frameworks (COFs) with semiconductors to create stable organic–inorganic Z‐scheme heterojunctions for artificial photosynthesis is presented. A series of COF–semiconductor Z‐scheme photocatalysts combining water‐oxidation semiconductors (TiO₂, Bi₂WO₆, and α‐Fe₂O₃) with CO₂ reduction COFs (COF‐316/318) was synthesized and exhibited high photocatalytic CO₂‐to‐CO conversion efficiencies (up to 69.67 μmol g^?1 h^?1), with H₂O as the electron donor in the gas–solid CO₂ reduction, without additional photosensitizers and sacrificial agents. This is the first report of covalently bonded COF/inorganic‐semiconductor systems utilizing the Z‐scheme applied for artificial photosynthesis. Experiments and calculations confirmed efficient semiconductor‐to‐COF electron transfer by covalent coupling, resulting in electron accumulation in the cyano/pyridine moieties of the COF for CO₂ reduction and holes in the semiconductor for H₂O oxidation, thus mimicking natural photosynthesis.     

Saturated Heavier Group 14 Compounds as ‐Electron‐Acceptor (Z‐Type) Ligands

This review article describes the chemistry of transition‐metal complexes containing heavier group 14 elements (Si, Ge, and Sn) as the σ‐electron‐acceptor (Z‐type) ligands and discusses the characteristics of bonds between the transition metal and Z‐type ligand. Moreover, we review the iridium hydride mediated cleavage of E–X bonds (E=Si, Ge; X=F, Cl), where the key intermediates are pentacoordinate silicon or germanium compounds bearing a dative M→E bond.     

Application of Z‐sinapinic matrix in peptide MALDI‐MS analysis

Since introduction of sinapinic acid (SA) and α‐cyano‐4‐hydroxycinnamic acid as matrices, successful application of matrix‐assisted laser desorption/ionization mass spectrometry started for protein/polypeptides. Both show some limitations in short peptide analysis because matrix clusters are quite abundant. Cinnamics currently used are E‐cinnamics. Here, Z‐SA as matrix for peptides is studied and compared with E‐SA and α‐cyano‐4‐hydroxycinnamic acid. Minor number of clusters is always observed in the low m/z region allowing the detection of short peptides. The results here described show that this novel matrix is a tool of choice for direct, rapid and sensitive detection of hydrophilic and hydrophobic peptides. Copyright © 2017 John Wiley & Sons, Ltd.     

Z‐Shaped Pentaleno‐Acene Dimers with High Stability and Small Band Gap

Acene‐based materials have promising applications for organic electronics but the major constrain comes from their poor stability. Herein a new strategy to stabilize reactive acenes, by fusion of an anti‐aromatic pentalene unit onto the zigzag edges of two acene units to form a Z‐shaped acene dimer, is introduced. The Z‐shaped acene dimers are extremely stable and show a small energy gap resulting from intramolecular donor–acceptor interactions. X‐ray crystallographic analysis revealed their unique geometry and one‐dimensional slip‐stack columnar structure. Besides optical and electrochemical characterizations, solution‐processed field‐effect transistors were also fabricated.     

The tetrapeptide Z‐Leu‐Aib‐Pro‐Val‐OBg monohydrate

The intramolecular hydrogen‐bonding pattern of Z‐Leu‐Aib‐Pro‐Val‐OBg monohydrate [(N‐benzhydryl­amino)­carbonyl­methyl N‐benzyl­oxy­carbonyl‐α‐amino­isobutyryl­prolyl­valinate monohydrate], C₄₃H₅₅N₅O₈·H₂O, is unusual for a tetrapeptide because, in addition to a 14 hydrogen bond, a second hydrogen bond of the type 15 is formed. This folding reflects the intramolecular hydrogen‐bonding pattern that this amino acid sequence adopts in the naturally occurring peptaibol alamethicin.     

Through‐space 19F–19F spin–spin coupling in ortho‐fluoro Z‐azobenzene

We report through‐space (TS) ¹⁹F–¹⁹F coupling for ortho‐fluoro‐substituted Z ‐azobenzenes. The magnitude of the TS‐coupling constant (^TSJ_FF) ranged from 2.2–5.9 Hz. Using empirical formulas reported in the literature, these coupling constants correspond to non‐bonded F–F distances (d_FF) of 3.0–3.5 Å. These non‐bonded distances are significantly smaller than those determined by X‐ray crystallography or density functional theory, which argues that simple models of ¹⁹F–¹⁹F TS spin–spin coupling solely based d_FF are not applicable. ¹H, ¹³C and ¹⁹F data are reported for both the E and Z isomers of ten fluorinated azobenzenes. Density functional theory [B3YLP/6‐311++G(d,p)] was used to calculate ¹⁹F chemical shifts, and the calculated values deviated 0.3–10.0 ppm compared with experimental values. Copyright © 2015 John Wiley & Sons, Ltd.     

Z‐Selective Cross Metathesis with Ruthenium Catalysts: Synthetic Applications and Mechanistic Implications

Olefin cross metathesis is a particularly powerful transformation that has been exploited extensively for the formation of complex products. Until recently, however, constructing Z‐olefins using this methodology was not possible. With the discovery and development of three families of ruthenium‐based Z‐selective catalysts, the formation of Z‐olefins using metathesis is now not only possible but becoming increasingly prevalent in the literature. In particular, ruthenium complexes containing cyclometalated NHC architectures developed in our group have been shown to catalyze various cross metathesis reactions with high activity and, in most cases, near perfect selectivity for the Z‐isomer. The types of cross metathesis reactions investigated thus far are presented here and explored in depth.     

Theoretical mechanism for selective catalysis of ruthenium complex catalyzed hydroboration of terminal alkynes to Z‐vinylboronates

Detailed mechanism of the hydroboration of terminal alkynes catalyzed by ruthenium complex was studied using density functional theory. The calculated results suggest that the reaction proceeds in two steps: alkyne rearrangement and catalyst regeneration. Vinylboronate products with E and Z configuration are formed in this reaction. Path A forming Z‐vinylboronate is the preferred pathway. Noncovalent interaction between B? H bond and Ru centre determines the preferred pathway of the reaction. The E_gap of HOMO‐LUMO for the reactant is lowered with the assistance of ruthenium–borane complex (Ru–Cat) formation. A hypothetical control model using 1, 2‐dimethyl acetylene (internal alkyne) and styrene (terminal alkene) as the reaction substrates was designed. The calculated results suggest that the activation barrier of the rate‐determining process is too high, which make the hydroboration reaction of styrene and 1, 2‐dimethyl acetylene (CH₃C‐CCH₃) hard to occur. The results uncover the selectivity of the ruthenium complex for hydroboration of terminal alkynes. © 2014 Wiley Periodicals, Inc.     

Direct Z‐Scheme Hetero‐phase Junction of Black/Red Phosphorus for Photocatalytic Water Splitting

Black phosphorus (BP) has recently drawn attention in photocatalysis for its optical properties. However, limited by the rapid recombination of photogenerated carriers, the use of BP for photocatalytic water splitting still remains a huge challenge. Herein, we prepare a black/red phosphorus (BP/RP) hetero‐phase junction photocatalyst by a wet‐chemistry method to promote the interfacial charge separation and thus achieve Z‐scheme photocatalytic water splitting without using sacrificial agents. The Z‐scheme mechanism was confirmed by time‐resolved transient absorption spectroscopy. This work provides a novel insight into the interface design of hetero‐phase junction with atomic precision.     

Synthesis of 11Z‐9‐demethyl‐9‐((3‐indolyl)methyl)retinal

A convenient synthesis of 11Z‐9‐demethyl‐9‐((3‐indolyl)methyl)retinal, which has an amino acid residue of tryptophan at the 9 position in retinal, is described using a tricarbonyliron complex.     

Controlling Electron Rebound within Four‐Base π‐Stacks in Z‐DNA by Changing the Sugar Moiety from Deoxy‐ to Ribonucleotide

Charge transfer through DNA is of great interest because of the potential of DNA to be a building block for nanoelectronic sensors and devices. The photochemical reaction of 5‐halouracil has been used for probing charge‐transfer processes along DNA. We previously reported on unique charge transfer following photochemical reaction of 5‐bromouracil within four‐base π‐stacks in Z‐DNA. In this study, we incorporated a guanosine instead of a deoxyguanosine into Z‐DNA, and found that electron transfer occurs in a different mechanism through four‐base π‐stacks.     

Synthesis of Linear (Z)‐α,β‐Unsaturated Esters by Catalytic Cross‐Metathesis. The Influence of Acetonitrile

Kinetically controlled catalytic cross‐metathesis reactions that generate (Z)‐α,β‐unsaturated esters selectively are disclosed. A key finding is that the presence of acetonitrile obviates the need for using excess amounts of a more valuable terminal alkene substrates. On the basis of X‐ray structure and spectroscopic investigations a rationale for the positive impact of acetonitrile is provided. Transformations leading to various E,Z‐dienoates are highly Z‐selective as well. Utility is highlighted by application to stereoselective synthesis of the C1–C12 fragment of biologically active natural product (?)‐laulimalide.     

Targeting Non‐B‐Form DNA in Living Cells

Under certain conditions, repetitive DNA motifs have the potential to adopt non‐B‐form DNA structures, such as hairpins, triplexes, Z‐DNA, quadruplexes, and i‐motifs. Some non‐B‐form DNAs have been proposed to cause mutations and, consequently, participate in several biologically important processes, including regulation, evolution, and human disease. Advancement in the knowledge of specific interactions between molecules and non‐B‐form DNAs at the molecular level in living cells is important for understanding their biological functions. In this review, we describe the latest studies on molecules that target non‐B‐form DNAs in vivo, with a focus on Z‐DNA, G‐quadruplexes, triplexes, i‐motifs, and hairpins.     

Kinetic study of the gas‐phase photolysis and OH radical reaction of E,Z‐ and E,E‐2,4‐Hexadienedial

Unsaturated 1,6‐dicarbonyls like 2,4‐hexadienedial are ring opening products in the OH initiated photo‐oxidation of aromatic hydrocarbons. In the present study, the photolysis of E,Z‐ and E,E‐2,4‐hexadienedial has been investigated under natural sunlight conditions in a large volume outdoor reaction chamber. In the case of the E,Z‐isomer, an extremely rapid isomerization into the E,E‐form was observed. The photoisomerization frequency, relative to that of NO₂, was found to be J(E,Z‐2,4‐hexadienedial)/J(NO₂) = (0.148 ± 0.012). A more complex photolysis behavior was observed for E,E‐2,4‐hexadienedial. Here, a fast equilibrium preceded a comparably slow photolysis. For the equilibrium reaction, relative frequencies of J(E,E‐2,4‐hexadienedial → EQUI)/J(NO₂) = (0.113 ± 0.009) and J(EQUI → E,E‐2,4‐hexadienedial)/J(NO₂) = (0.192 ± 0.016) were obtained, giving an equilibrium constant of K = (0.59 ± 0.07). For the photolysis frequencies, ratios of J(E,E‐2,4‐hexadienedial → products)/J(NO₂) = J(EQUI → products)/J(NO₂) = (1.22 ± 0.45)·10⁻² were determined. Qualitative aerosol measurements during the experiments showed that the photolysis of 2,4‐hexadienedials is a source of secondary organic aerosol. In addition to the photolysis study, OH radical reaction rate constants were determined, values of (7.4 ± 1.9)·10⁻¹¹ and (7.6 ± 0.8)·10⁻¹¹ cm³ s⁻¹ were obtained for E,Z‐ and E,E‐2,4‐hexadienedial, respectively. The results indicate that the dominant fate of E,Z‐2,4‐hexadienedial in the atmosphere will be photoisomerization, while for E,E‐2,4‐hexadienedial, both photolysis and OH radical reaction will be important sinks. © 1999 John Wiley & Sons, Inc. Int J Chem Kinet 31: 689–697, 1999     

A convenient synthesis of substituted 3‐alkoxycarbonyl‐β,γ‐unsaturated esters with predominant Z‐selectivity

The consecutive reaction of bis[2,2,2‐trifluoroethyl]phosphite with sodium hydride, dimethyl maleate, and aldehydes gives 3‐alkoxycarbonyl‐β,γ‐unsaturated esters with predominant Z‐selectivity in 62–94% yields (Z/E = 85–60:15–40). The Z‐ and E‐isomer can be separated conveniently by column chromatography. © 2003 Wiley Periodicals, Inc. Heteroatom Chem 14:276–279, 2003; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/hc.10142     

Polymeric Carbon Nitride/Reduced Graphene Oxide/Fe2O3: All‐Solid‐State Z‐Scheme System for Photocatalytic Overall Water Splitting

The charge transfer between hydrogen evolution photocatalysts (HEPs) and oxygen evolution photocatalysts (OEPs) is the rate‐determining step that controls the overall performance of a Z‐scheme water‐splitting system. Here, we carefully design reduced graphene oxide (RGO) nanosheets for use as solid‐state mediators to accelerate the charge carrier transfer between HEPs (e.g., polymeric carbon nitride (PCN)) and OEPs (e.g., Fe₂O₃), thus achieving efficient overall water splitting. The important role of RGO could also be further proven in other PCN‐based Z‐systems (BiVO₄/RGO/PCN and WO₃/RGO/PCN), illustrating the universality of this strategy.     

Synthesis and characterization of a poly(GMA)‐graft‐poly(Z‐L‐lysine) graft copolymer with a rod‐like structure

This study applied the macromonomers and glycidyl methacrylate (GMA) to synthesize a series of the graft copolymers, poly(GMA)‐graft‐poly(Z‐L ‐lysine), and investigated the conformation of the graft copolymer. The graft copolymers were synthesized with different GMA monomer ratios (28 to 89%) and different degrees of polymerization (DP) (8 to 15) of the poly(Z‐L ‐lysine) side chain to analyze secondary structure relationships. Atomic force microscopy (AFM), Fourier transform infrared spectroscopy (FTIR), and both wide angle and small angle X‐ray scattering spectroscopy (WAXS, SAXS) were used to investigate the relationship between the microstructure and conformation of the graft copolymers and the different monomer ratios and side chain DP. In AFM images, n8‐G89 (the graft copolymer containing 89% GMA units and the macromonomer DP is 8) showed tiny and uniform rod‐like structures, and n14‐G43 (the graft copolymer containing 43% GMA units and the macromonomer DP is 14) showed uniform rod‐like structures. FTIR spectra of the graft copolymers showed that the variations of α‐helix and β‐sheet secondary structures in the graft copolymers relate to the monomer ratios of the graft copolymers. However, the X‐ray scattering patterns indicated that the graft copolymer conformations were mainly dependent on the poly(Z‐L ‐lysine) side chain length, and these results were completely in accordance with the AFM images. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 4655–4669, 2009