Synthesis and properties of through‐space conjugated polymers based on π–π stacked 1,3‐biarylpropane tethering units

Novel skipped‐π polymers in which the π‐components are connected with 2‐substituted trimethylene tethering units exhibit bathochromically shifted, broadened ultraviolet absorption with a unique lower‐energy absorption band and a largely red‐shifted fluorescent emission. These results suggest that through‐space π–π interactions owing to a stair‐like stacking substructure in these polymers extend the π‐conjugation of the components in the ground and excited states. As the photophysical properties of the polymers observed both in a solution and in a dried film are similar to those of the J‐aggregates of π‐molecules, these polymers may be considered as pseudo J‐stacking (or J‐like‐stacking) polymers. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2013 , 51, 3412–3419     

Theoretical Studies on the Hydrogen‐bonding and π‐Stacking Interactions in the m‐Nisoldipine Polymorphism Dimers

The intermolecular interactions in the dimers of m‐nisoldipine polymorphism were studied by B3LYP calculations and quantum theory of "atoms in molecules" (QTAIM) studies. Four geometries of dimers were obtained: dimer I (a‐dimer, O···H? N), dimer II (b‐dimer, O···H? N), dimer III (b‐dimer, π‐stacking‐c), and dimer IV (b‐dimer, π‐stacking‐p). The interaction energies of the four dimers are along the sequence of II>I>III>IV. The intermolecular distance of the interactions follows the order: I (O···H? N)II>III>IV, and the electrostatic character decreases along the sequence: I>II>III>IV.     

A new methanol solvate and Hirshfeld analysis of π‐stacking in 2,3,6,7,10,11‐hexahydroxytriphenylene solvates

The structure of 2,3,6,7,10,11‐hexahydroxytriphenylene (hhtp) methanol monosolvate, C₁₈H₁₂O₆·CH₃OH, has triclinic symmetry (space group P). The compound has a three‐dimensional layered network structure formed by intermolecular hydrogen bonding. Structure analysis with Hirshfeld surfaces is shown to be a sensitive method for comparing π‐stacking effects in the five known solvates of hhtp. The title structure shows slightly weaker π‐stacking than the dihydrate, but stronger π‐stacking than the other three solvates.     

Solution and Solid‐State Analysis of Binding of 13‐Substituted Berberine Analogues to Human Telomeric G‐quadruplexes

The interaction between 13‐phenylalkyl and 13‐diphenylalkyl berberine derivatives ( NAX ) and human telomeric DNA G4 structures has been investigated by both spectroscopic and crystallographic methods. NAX042 and NAX053 are the best compounds improving the performance of the natural precursor berberine. This finding is in agreement with the X‐ray diffraction result for the NAX053 ‐Tel12 adduct, showing the ligand which interacts via π‐stacking, sandwiched at the interface of two symmetry‐related quadruplex units, with its benzhydryl group contributing to the overall stability of the adduct by means of additional π‐stacking interactions with the DNA residues. The berberine derivatives were also investigated for their cytotoxic activity towards a panel of human cancer cell lines. Compounds NAX042 and NAX053 affect the viability of cancer cell lines in a dose‐dependent manner.     

Elucidation of π‐Conjugation Modes in Diarene‐Fused 1,2‐Dihydro‐1,2‐diborin Dianions

A series of diarene‐fused 1,2‐dihydro‐1,2‐diborins were prepared as a new B? B‐bond‐embedded polycyclic π‐electron system. The reduction of these compounds with metals produced their corresponding dianions, the π‐conjugation modes of which varied from 6π‐conjugation within the central 1,2‐diborin skeleton to 14π peripheral conjugation over the tricyclic skeleton, depending on the nature of the reduced biaryl framework. Moreover, the countercation to the dianions had a significant effect on the absorption spectra, with a dramatic color change from yellow to deep blue, depending on the distance between the tricyclic dianion skeleton and the countercation.     

Corannulene‐Fused Anion‐Responsive π‐Conjugated Molecules that Form Self‐Assemblies with Unique Electronic Properties

The fusion of bowl‐shaped π‐conjugated corannulene units to anion‐responsive π‐conjugated dipyrrolyldiketone‐boron complexes resulted in new molecular materials with a unique self‐assembly capability. The bowl‐fused receptor with aliphatic tails could form both supramolecular gels and mesophases through π‐stacking interactions and also exhibited anion‐responsive characteristics. The presence of the π‐bowl unit not only afforded enhanced self‐assembly capability both in solution and in the mesophases, as evidenced by gelation experiments and phase‐transition profiles, but also enhanced intrinsic charge‐carrier mobility.     

Interpreting geometric preferences in π‐stacking interactions through molecular orbital analysis

The preference of π‐stacking interactions for parallel‐displaced (PD) and twisted (TW) conformations over the fully eclipsed sandwich (S) in small π‐stacked dimers of benzene, pyridine, pyrimidine, 1,3,5‐trifluorobenzene, and hexafluorobenzene are examined in terms of enhancement of the inter‐ring density through mixing of the monomer orbitals (MOs). PD and/or TW conformations are consistent with a non‐zero “stack bond order” (SBO), defined in analogy to the bond order of conventional MO theory, as the difference in the occupation of bonding and antibonding π‐type dimer MOs. In the S conformation, the equal number of bonding and antibonding MOs cancel overall stack bonding character between the monomers for an SBO of zero and an overall repulsive interaction. PD from the S shifts the character of at least one antibonding combination of monomer π‐type MOs with nodes perpendicular to the coordinate for PD to bonding, leading to an attractive nonzero SBO. The inter‐ring density measured through the Wiberg bond index analysis shows an enhancement at the PD conformations consistent with greater interpenetration of the monomer densities. This intuitive bonding model for π‐stacking interactions is complementary to highly accurate calculations of π‐stacking energies and allows a predictive understanding of relative stability using cheaper quantum chemical methods.     

The ability of Ex2Box4+ to interact with guests containing π‐electron‐rich and π‐electron‐poor moieties

The ability of Ex 2 Box⁴⁺ as a host, able to trap guests containing both π‐electron rich (polycyclic aromatic hydrocarbons‐PAHs) and π‐electron poor (quinoid‐ and nitro‐PAHs) moieties was investigated to shed light on the main factors that control the host–guest (HG) interaction. The nature of the HG interactions was elucidated by energy decomposition (EDA‐NOCV), noncovalent interaction (NCI), and magnetic response analyses. EDA‐NOCV reveals that dispersion contributions are the most significant to sustain the HG interaction, while electrostatic and orbital contributions are very tiny. In fact, no significant covalent character in the HG interactions was observed. The obtained results point strictly to NCIs, modulated by dispersion contributions. Regardless of whether the guests contain π‐electron‐rich or π‐electron‐poor moieties, and no significant charge‐transfer was observed. All in all, HG interactions between guests 3‐14 and host 2 are predominantly modulated by π‐π stacking.     

Tetrapeptidic Molecular Hydrogels: Self‐assembly and Co‐aggregation with Amyloid Fragment Aβ1‐40

A new family of isomeric tetrapeptides containing aromatic and polar amino acid residues that are able to form molecular hydrogels following a smooth change in pH is described. The hydrogels have been studied by spectroscopic and microscopic techniques showing that the peptide primary sequence has an enormous influence on the self‐assembly process. In particular, the formation of extended hydrophobic regions and the appearance of π‐stacking interactions have been revealed as the driving forces for aggregation. Moreover, the interaction of these compounds with amyloid peptidic fragment Aβ1‐40 has been studied and some of them have been shown to act as templates for the aggregation of this peptide into non‐β‐sheet fibrillar structures. These compounds could potentially be used for the capture of toxic, soluble amyloid oligomers.     

2‐Amino‐5‐iodopyridinium bromide hemihydrate and 2‐amino‐5‐iodopyridinium chloride monohydrate

The hydrobromide and hydrochloride salts of 2‐amino‐5‐iodopyridine were prepared from aqueous solutions. The hydrobromide salt, C₅H₆IN₂⁺·Br⁻·0.5H₂O, crystallizes as a hemihydrate, and exhibits hydrogen bonding and π‐stacking which stabilize the crystal structure. The hydrochloride salt, C₅H₆IN₂⁺·Cl⁻·H₂O·0.375HCl, crystallized as the hydrate and exhibits similar hydrogen bonding and π‐stacking in the lattice. The most interesting feature of the hydrochloride salt is the presence of an additional fractional HCl molecule which introduces disorder in the location of the water molecule. The additional proton from the fractional HCl molecule is accounted for by the presence of a partial hydronium ion on one of the water sites.     

Alternated π‐conjugated polymers based on a 1,2‐diiminocyclohexane chiral unit for nitroaromatics sensing

The detection of 2,4‐dinitrotoluene (DNT) by fluorescence quenching of a new class of polyimines consisting in π‐conjugated segments regularly alternated with chiral C₂ symmetry units has been studied for solutions and thin films. Their photophysical properties and their sensitivity towards DNT detection has been compared to those of a small model molecule incorporating the same π‐conjugated segment. In solution, all the compounds exhibit the same photo‐physical properties and sensitivity towards DNT detection. In contrast, for thin films, better performances are observed in static conditions for this new class of polyimines compared to the small model molecule. It seems that C₂ symmetry units prevent from the stacking of the π‐conjugated segments and provide in addition to high fluorescence signal an improved diffusion of the analyte inside the films. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 4141–4149, 2009     

Calculated geometries of dications of bis odd‐membered π‐ring systems containing a NCN fragment and related π‐systems. An opposite out‐of‐plane rotation of the 4n π‐ring subsystems

Quantum chemical calculations have been carried out on dications of bis odd‐membered π‐ring systems containing a NCN fragment and related π‐systems. An opposite out‐of‐plane rotation of both subsystems was found if these systems contain 4n π‐electrons (antiaromatic). A planar situation was found for 4n+2 π‐electrons (aromatic). The geometric representations could be compared with X‐ray crystallographic three‐dimensional structures of related compounds. Calculations at different levels clearly show that separation of the σ‐ and π‐electron contribution is an effective way to elucidate the origin of the geometrical changes. We also give attention to some fundamental aspects of the subsystems related to the 1,3‐azolium cations because of their biochemical relevance such as fast C₂? H proton exchange. We postulate that at least two molecules of water are involved in this process. The significance of a trigonal pyramidal (TP) geometry has been emphasized. © 2001 Wiley Periodicals, Inc. Int J Quantum Chem, 2001     

Self‐Assembly through Coordination and π‐Stacking: Controlled Switching of Circularly Polarized Luminescence

Multiple noncovalent interactions can drive self‐assembly through different pathways. Here, by coordination‐assisted changes in π‐stacking modes between chromophores in pyrene‐conjugated histidine (PyHis), a self‐assembly system with reversible and inversed switching of supramolecular chirality, as well as circularly polarized luminescence (CPL) is described. It was found that l ‐PyHis self‐assembled into nanofibers showing P‐chirality and right‐handed CPL. Upon Zn^II coordination, the nanofibers changed into nanospheres with M‐chirality, as well as left‐handed CPL. The process is reversible and the M‐chirality can change to P‐chirality by removing the Zn^II ions. Experimental and theoretical models unequivocally revealed that the cooperation of metal coordination and π‐stacking modes are responsible the reversible switching of supramolecular chirality. This work not only provides insight into how multiple noncovalent interactions regulate self‐assembly pathways.     

Pyrene‐Bridged Boron Subphthalocyanine Dimers: Combination of Planar and Bowl‐Shaped π‐Conjugated Systems for Creating Uniquely Curved π‐Conjugated Systems

Pyrene‐bridged boron subphthalocyanine dimers were synthesized from a mixed‐condensation reaction of 2,7‐di‐tert‐butyl‐4,5,9,10‐tetracyanopyrene and tetrafluorophthalonitrile, and their syn and anti isomers arising from the result of connecting two bowl‐shaped boron subphthalocyanine molecules were successfully separated. Expansion of the conjugated system of boron subphthalocyanine through a pyrene bridge caused a redshift of the Q band absorption relative to the parent pyrene‐fused monomer, whereas combining the curved π‐conjugation of boron subphthalocyanine with the planar π‐conjugation of pyrene enabled facile embracement of C₆₀ molecules, owing to the enhanced concave–convex π–π stacking interactions.     

Columnar Mesophase Formation of Cyclohexa‐m‐phenylene‐Based Macrocycles

Two novel discotic macrocycles, substituted cyclohexa‐m‐phenylene (CHP) and cyclo‐3,6‐trisphenanthrylene (CTP), and the linear oligomer 3,3′:6′,3′′‐terphenanthrene (TP) as a model substance have been synthesized by repetitive cross‐coupling reactions. To correlate the molecular design with the supramolecular architecture and the established macroscopic order, 2D wide‐angle X‐ray scattering experiments were performed on mechanically extruded filaments. At room temperature in their crystalline phases, all three compounds revealed columnar assemblies in which the macrocycles self‐organized by π‐stacking interactions. The degree of macroscopic order was found to depend upon the planarity and stiffness of the aromatic core. The flexible CHP ring showed a poor macroscopic order of the columnar structures and a low isotropization temperature, whereas the more‐planar, less‐flexible CTP self‐assembled into well‐defined superstructures. The larger π‐stacking area and the more‐pronounced intermolecular interactions for CTP led to the formation of a mesophase over a very large temperature range. The surprising columnar organization of the “open” TP system was explained by back‐folding of the molecule into a ringlike structure.     

β‐Lapachone

The most remarkable aspect of the crystal structure of the title compound (systematic name: 3,4‐dihydro‐2,2‐dimethyl‐2H‐naphtho[1,2‐b]pyran‐5,6‐dione), C₁₅H₁₄O₃, is that a π‐stacking inter­action is present between the two naphthalene ring systems of symmetry‐related mol­ecules. Apart from these π–π inter­actions, different mol­ecules are held together by weak C—H⋯O hydrogen‐bonding inter­actions.     

Ion‐Free and Ion‐Pairing Assemblies of Anion‐Responsive π‐Electronic Systems Possessing Directly Linked Alkyl Chains

Alkyl‐substituted pyrrole‐based anion‐responsive π‐electronic systems formed supramolecular gels and liquid crystals through effective π–π stacking and van der Waals interactions. The addition of chloride as a planar cation salt afforded ion‐pairing assemblies as soft materials comprising planar receptor‐Cl^? complexes and the cation.     

Dramatic Enhancement of Binding Affinities Between Foldamer‐Based Receptors and Anions by Intra‐Receptor π‐Stacking

As a synthetic model for intra‐protein interactions that reinforce binding affinities between proteins and ligands, the energetic interplay of binding and folding was investigated using foldamer‐based receptors capable of adopting helical structures. The receptors were designed to have identical hydrogen‐bonding sites for anion binding but different aryl appendages that simply provide additional π‐stacking within the helical backbones without direct interactions with the bound anions. In particular, the presence of electron‐deficient aryl appendages led to dramatic enhancements in the association constant between the receptor and chloride or nitrate ions, by up to three orders of magnitude. Extended stacking within the receptor contributes to the stabilization of the entire folding structure of complexes, thereby enhancing binding affinities.     

Discrete π‐Stacks from Self‐Assembled Perylenediimide Analogues

The formation of well‐defined finite‐sized aggregates represents an attractive goal in supramolecular chemistry. In particular, construction of discrete π‐stacked dye assemblies remains a challenge. Reported here is the design and synthesis of a novel type of discrete π‐stacked aggregate from two comparable perylenediimide (PDI) dyads ( PEP and PBP ). The criss‐cross PEP ‐ PBP dimers in solution and ( PBP ‐ PEP )‐( PEP ‐ PBP ) tetramers in the solid state are well elucidated using single‐crystal X‐ray diffraction, dynamic light scattering, and diffusion‐ordered NMR spectroscopy. Extensive π–π stacking between the PDI units of PEP and PBP as well as repulsive interactions of swallow‐tailed alkyl substituents are responsible for the selective formation of discrete dimer and tetramer stacks. Our results reveal a new approach to preparing discrete π stacks that are appealing for making assemblies with well‐defined optoelectronic properties.     

Ion‐Pairing Assemblies of Porphyrin–AuIII Complexes in Combination with π‐Electronic Receptor–Anion Complexes

Anion complexes of anion‐responsive π‐electronic molecules can behave as pseudo π‐electronic anions providing various ion pairs in combination with countercations. In this study, single crystals of ion‐pairing assemblies comprising porphyrin–Au^III complexes and Cl^? complexes of dipyrrolyldiketone BF₂ complexes were prepared from 1:1 mixtures of anion receptors and the Cl^? salts of cationic porphyrins in solution. In the solid state, the ion pairs formed characteristic assemblies, depending on the substituents of the anion receptors and porphyrin–Au^III complexes. Theoretical calculations on the ion pairs revealed that the stacking structures are stabilized by compensating positive and negative charges as well as π–π interactions.