Effect of amphiphilic compounds on the thermoreversible conformational transition of κ carrageenan in aqueous-saline solutions

The effect of amino acids, phenylalanine and lysine, and lithium ions on the conformation state of κ carrageenan has been studied by high-sensitivity DSC. The binding constants of lysine and lithium ions with the helical and coil forms of polysaccharide have been measured. The preferential binding of lysine molecules and lithium ions by the helical conformation of κ carrageenan has been demonstrated. The affinity of the helical form of κ carrageenan to lysine is much higher than that to lithium ions. The conformational state of κ carrageenan in the presence of cetyltrimethylammonium bromide has been investigated. The binding of cetyltrimethylammonium by κ carrageenan molecules leads to development of a new ordered structure of the polysaccharide.     

Magnetic Control of Macromolecular Conformations in Supramolecular Anionic Polysaccharide–Iron Complexes

The anionic iota carrageenan polysaccharide is enriched with Fe^II and Fe^III by ion exchange against FeSO₄ and FeCl₃. With divalent iron, portions of polymer chains undergo a secondary structure transition from random coils to single helices. The single‐chain macromolecular conformations can be manipulated by an external magnetic field: upon exposure to 1.1 T, the helical portions exhibit 1.5‐fold stiffening and 1.1‐fold stretching, whereas the coil conformations respond much less as a result of lower contents of condensed iron ions. Along with the coil–helix transition, the trivalent iron triggers the formation of superstructures. The applicability of iron‐enriched iota carrageenan as functional ingredient for food fortification is tested by free Fe²⁺ and Fe³⁺ contents, respectively, with the most promising iota‐Fe^III yielding 53 % of bound iron, which is due to the superstructures, where the ferric ions are chelated by the supramolecularly self‐assembled polymer host.     

Physical properties of xanthan,galactomannan and their mixtures in aqueous solutions

Some new information on the conformation of xanthan in aqueous solutions is given. A single helical chain conformation characterizes xanthan in the native state. When heated over the critical temperature for conformational change ( helixŕ coil), the xanthan is denatured and renatured when it is cooled down in a localy double helical structure. A galactomannan was also characterized and its persistence length was obtained (Lp ≈︁ 90A°). Then mixtures of the galactomannan and xanthan were investigated to propose a mechanism for the specific gelation. From the results of microcalorimetry and circular dichroism, it is concluded that a complex is formed between one disordered xanthan chain and one galactomannan chain and that an ordered conformation is stabilized at temperatures lower than 25°C when the galactomannan has a M/G ratio of ≈︁ 3. This temperature corresponds to the sol-gel transition. This is the first time that a structure of the crosslink points is demonstrated.     

The effect of the linear charge density of carrageenan on the ion binding investigated by differential scanning calorimetry, dc conductivity, and kHz dielectric relaxation

The effect of the linear charge density of natural polyelectrolyte, carrageenan, on the ion binding to carrageenan molecules in relation to the gelation was investigated by using the dielectric relaxation spectroscopy, dc conductivity, optical rotation, and differential scanning calorimetry (DSC). Although carrageenan is an anionic polysaccharide, carrageenan molecules in the helix state at low temperatures can bind not only cation, such as potassium and cesium, but also anion, such as iodide. The dc conductivity steeply decreases just below the coil–helix transition temperature, which indicates the binding of ion to the carrageenan molecules in the helix state due to the increase of the linear charge density compared with that in the coil state. The addition of NaI promotes the helix formation, and prevents from aggregation of helices, which was suggested by the results of the dynamic shear modulus and the DSC, and resulted in an increase of the relaxation amplitude of the lowest frequency relaxation (kHz) attributed to the fluctuation of the tightly bound counter ions along the high charge density region (helix). It is concluded that binding of iodide induces (1) the increase in the amount of tightly bound counterions to carrageenan molecules and (2) the formation of non-aggregated helix.     

Increasing the Size of an Aromatic Helical Foldamer Cavity by Strand Intercalation

The postsynthetic modulation of capsules based on helical aromatic oligoamide foldamers would be a powerful approach for controlling their receptor properties without altering the initial monomer sequences. With the goal of developing a method to increase the size of a cavity within a helix, a single‐helical foldamer capsule was synthesized with a wide‐diameter central segment that was designed to intercalate with a second shorter helical strand. Despite the formation of stable double‐helical homodimers (K_dim>10⁷ M ^?1) by the shorter strand, when it was mixed with the single‐helical capsule sequence, a cross‐hybridized double helix was formed with K_a>10⁵ M ^?1. This strategy makes it possible to direct the formation of double‐helical heterodimers. On the basis of solution‐ and solid‐state structural data, this intercalation resulted in an increase in the central‐cavity size to give a new interior volume of approximately 150 ų.     

Equilibrium Shift in Solution: Molecular Shape Recognition and Precipitation of a Synthetic Double Helix Using Helicene‐Grafted Silica Nanoparticles

Chiral silica nanoparticles (70 nm) grafted with (P)‐helicene recognized the molecular shape of double helix and random coil (P)‐ethynylhelicene oligomers in solution. A mixture of the (P)‐nanoparticles and double helix precipitated much faster than a mixture of the (P)‐nanoparticles and random coil, and the precipitate contained only the double helix. The mixture of the (P)‐nanoparticles and (P)‐ethynylhelicene pentamer reversibly dispersed in trifluoromethylbenzene upon heating at 70 °C and precipitated upon cooling at 25 °C. When a 10:90 equilibrium mixture of the double helix and random coil in solution was treated with the (P)‐nanoparticles, the double helix was precipitated in 53 % yield and was accompanied by equilibrium shift.     

Conformation of Azobenzene‐Modified Poly(α‐L‐Glutamate) (AZOPLGA) in Thin Films: Solid State NMR Studies

Abstract

The conformations of azobenzene‐modified poly(α‐L‐glutamate)s (AZOPLGA) with a different degree of functionalization were examined by solid state ¹³C NMR. The polymer main chain conformations in AZOPLGA powders (precipitated from reaction system) changes from α‐helix to β‐sheet when the degree of functionalization increases from 12% to 56%. In addition, the solvent used for fabricating films plays an important role in organizing AZOPLGA backbones into characteristic conformation. For AZOPLGA56 (AZOPLGA with 56% of functionalization) cast films, the polymer backbones can assume conformations ranging from order state (β‐sheet) to random coil by changing the solvent for fabrication. In contrast, the effect of solvent on the conformation of AZOPLGA23 (AZOPLGA with 23% of functionalization) is not so significant. When compared with AZOPLGA23 powder (precipitated from reaction system), the helical conformation increases for AZOPLGA23 film cast from TFA. However, the fractions of α‐helix and β‐sheet conformation in AZOPLGA23 films (cast from DMF or pyridine) are nearly identical to that of AZOPLGA23 power. Moreover, even though the polymer backbones are random coil in AZOPLGA56 films when cast from TFA, some locally ordered domain can be observed. Lastly, the effect of the azo content appears to play a dominant role over the effect of solvents in directing the conformation of these polymers.     

Interactions of 2,2,2‐trifluoroethanol with melittin

Melittin dissolved in 42% trifluoroethanol‐water at pH 2 has been shown to be α‐helical between residues 6 and 12 and between residues 13 and 25, with the two helical regions separated by a bend at the Leu13 residue. The inter‐helix angle was found to be 154 ± 3° at 0 °C and 135 ± 3° at 25 °C. The dominant conformation of the peptide is thus similar to those observed by previous workers for the peptide in a variety of media. At 25 °C, intermolecular nuclear Overhauser effects arising from nuclear spin dipole‐dipole interactions between melittin hydrogens and fluorines of the solvent are essentially those expected for a system that is homogeneous as regards concentration and translational diffusion of the peptide and fluoroalcohol components. However, at 0 °C, peptide‐trifluoroethanol cross‐relaxation terms are negative, a result consistent with the conclusion that fluoroalcohol molecules associate with the peptide for times (～1 ns) that are long compared to the time of a typical peptide‐fluoroalcohol diffusive encounter (～0.2 ns). Such interactions may be responsible for the reduction of the translational diffusion coefficient of trifluoroethanol produced by dissolved peptides. Copyright © 2009 John Wiley & Sons, Ltd.     

Dynamic viscosity of dilute solutions of poly(L-glutamic acid)

The dynamic viscosity η′ of a dilute solution of poly(L-glutamic acid) (DP = 1370) in a mixed solvent made up of aqueous 0.2M NaCl and dioxane (2:1 by volume) is measured over the pH range 4.2–10 and in the frequency range 2–500 kHz. The frequency dependence of η′ in the helix region (low pH) is interpreted in terms of a model molecule consisting of n rigid helical segments connected by universal joints. The steady-flow viscosity, relaxation time, and high-frequency limiting viscosity at pH 4.75 (helical content 80%) are well explained by this model with n = 5. This value of n is consistent with that estimated from the nucleation parameter σ = 1.4 × 10^?3 obtained from the relation between reduced steady-flow viscosity and helical content. The high-frequency values of η′ in the coil region (high pH) are fitted by Peterlin's theory. The internal viscosity seems to arise in part from the polyelectrolytic character of the molecule. An additional relaxation at low frequencies in the coil region is ascribed to rotation of molecules elongated by the electrostatic interaction. The lower value of reduced steady-flow viscosity in the coil region in the mixed solvent compared with that in water is interpreted in terms of the lower degree of effective ionization and the selective solvation of water by the polypeptide. No anomaly is observed in the helix–coil transition region, indicating that the relaxation time for helix–coil equilibrium is less than 10^?6sec.     

Monitoring folding transitions of synthetic,branched-chain polypeptides by capillary zone electrophoresis

The coil/helix transition of a synthetic, branched-chain polymeric polypeptide (poly (Lys(Glu(1)-DL-Ala(3))EAK), 50-Lys residues long in the backbone, as a function of increasing molarities of methanol in solution, is here studied by both, circular dichroism (CD) and capillary zone electrophoresis. CD spectra showed that, at 75% v/v methanol, the transition from random coil to fully helical structure was obtained, in a pH 1.1 HCI solution in the presence of 20 mM NaCI. CZE studies, run in parallel, exhibited the classical unfolding to folding sigmoidal transition, with mid-point at 60% v/v methanol concentration, plateauing at ca. 80% v/v organic solvent. Surprisingly, though, such unfolding to folding transition was accompanied by an expansion, rather than a contraction, of the resulting ordered polypeptide. As the charge of the polypeptide (a pure polycation at a pH of 2.1 in CZE) was kept rigorously constant, a plot of the radius of the polymer along the sigmoidal transition clearly showed that the radius of gyration of the helical, structured polypeptide was in fact larger than that of the random coil. Such results were confirmed by molecular dynamics simulations, which indicated that the dimensions of such polypeptide, in alpha-helix configuration, were 8.5 nm (in length) and 3.2 nm (in diameter), whereas those of the corresponding random coil were 7.2 nm (in length) and 5.1 nm (length of shorter axis). It would thus appear that the randomized structure assumes the shape of a more compact object, roughly resembling a "rugby ball".     

Structural Transformation of the Peptide Fragments from the Reactive Center Loops of Serpins: Circular Dichroic Studies

Two peptides, derived from the reactive center of ovalbumin (OVARC) and plasminogen activator inhibitor‐1 (PAIRC) respectively were chemically synthesized and investigated by circular dichroic spectroscopy. The secondary structural transformation in solution and in solid state was studied. OVARC shows a nascent helical structure in aqueous solution, and its helical content increases under acidic conditions. There is no obvious structural conversion from solution to solid state. PAIRC, however, undergoes a structural transformation from random coil in aqueous solution to a typical β‐sheet structure in the solid state. Hexafluoroisopropanol (HFIP) prompts helical structures of the two peptides in solution, but it seems to trigger the structural formation of β‐sheets in solid state. The novel structural transformation from random coil or nascent helical structure in aqueous solution to the α‐helix in HFIP and to the β‐sheet structure in solid state may reflect the conformational polymorphism of the serpin reactive centers and is implicated in the structural features of the amyloid aggregates.     

Engineering a β‐Helical d,l‐Peptide for Folding in Polar Media

β Helices—helices formed by alternating d,l ‐peptides and stabilized by β‐sheet hydrogen bonding—are found naturally in only a handful of highly hydrophobic peptides. This paper explores the scope of β‐helical structure by presenting the first design and biophysical characterization of a hydrophilic d,l ‐peptide, 1 , that forms a β helix in methanol. The design of 1 is based on the β‐hairpin/β helix—a new supersecondary that had been characterized previously only for hydrophobic peptides in nonpolar solvents. Incorporating polar residues in 1 provided solubility in methanol, in which the peptide adopts the expected β‐hairpin/β‐helical structure, as evidenced by CD, analytical ultracentrifugation (AUC), NMR spectroscopy, and NMR‐based structure calculations. Upon titration with water (at constant peptide concentration), the structure in methanol ( 1 m ) transitions cooperatively to an extended conformation ( 1 w ) resembling a cyclic β‐hairpin; observation of an isodichroic point in the solvent‐dependent CD spectra indicates that this transition is a two‐state process. In contrast, neither 1 m nor 1 w show cooperative thermal melting; instead, their structures appear intact at temperatures as high as 65 °C; this observation suggests that steric constraint is dominant in stabilizing these structures. Finally, the ¹H NMR CαH spectroscopic resonances of 1 m are downfield‐shifted with respect to random‐coil values, a hitherto unreported property for β helices that appears to be a general feature of these structures. These results show for the first time that an appropriately designed β‐helical peptide can fold stably in a polar solvent; furthermore, the structural and spectroscopic data reported should prove useful in the future design and characterization of water‐soluble β helices.     

Effects of poly(ethylene oxide) and pH on the electrospinning of whey protein isolate

Poly(ethylene oxide) (PEO) is known for facilitating the electrospinning of biopolymer solutions, which are otherwise not electrospinnable. The objective of this study was to improve the understanding of the positive effects of PEO on the electrospinning of whey protein isolate (WPI) solutions under different pH conditions. Alterations in protein secondary structure and polymer solution properties (viscosity, conductivity, and dynamic surface tension), as induced by pH changes, significantly affected the electrospinning behavior of WPI/PEO (10% w/w: 0.4% w/w PEO) solutions. Acidic solutions resulted in smooth fibers (707 ± 105 nm) while neutral solutions produced spheres (2.0 ± 1.0 μm) linked with ultrafine fibers (138 ± 32 nm). In comparison, alkaline solutions produced fibers (191 ± 36 nm) that were embedded with spindle‐like beads (1.0 ± 0.5 μm). ¹³C NMR and FTIR spectroscopies showed that the increase in random coil and α‐helix secondary structures in WPI were the main contributors to the formation of bead‐less electrospun fibers. The electrospinning‐enabling properties of PEO on aqueous WPI solutions were attributed to physical chain entanglement between the two polymers, rather than specific polymer–polymer interactions. © 2012 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2012     

Hydrothermal Synthesis of Platinum‐Group‐Metal Nanoparticles by Using HEPES as a Reductant and Stabilizer

Platinum‐group‐metal (Ru, Os, Rh, Ir, Pd and Pt) nanoparticles are synthesized in an aqueous buffer solution of 4‐(2‐hydroxyethyl)‐1‐piperazineethanesulfonic acid (HEPES) (200 mM , pH 7.4) under hydrothermal conditions (180 °C). Monodispersed (monodispersity: 11–15 %) metal nanoparticles were obtained with an average particle size of less than 5 nm (Ru: 1.8±0.2, Os: 1.6±0.2, Rh: 4.5±0.5, Ir: 2.0±0.3, Pd: 3.8±0.4, Pt: 1.9±0.2 nm). The size, monodispersity, and stability of the as‐obtained metal nanoparticles were affected by the HEPES concentration, pH of the HEPES buffer solution, and reaction temperature. HEPES with two tertiary amines (piperazine groups) and terminal hydroxyl groups can act as a reductant and stabilizer. The HEPES molecules can bind to the surface of metal nanoparticles to prevent metal nanoparticles from aggregation. These platinum‐group‐metal nanoparticles could be deposited onto the surface of graphite, which catalyzed the aerobic oxidation of alcohols to aldehydes.     

Spontaneous formation of narrowly‐distributed self‐assembly from polyamidoamine dendron‐poly(L‐lysine) block copolymers through helix‐coil transition of poly(L‐lysine) block

The self‐assembly of head‐tail type block copolymers composed of polyamidoamine dendron head block and poly(L ‐lysine) (PLL) tail block was studied using a light scattering technique and transmission electron microscopy. A PLL tail block in a head‐tail type block copolymer exhibits a coil‐to‐helix transition as a result of the change in solvent quality from water to methanol. When the PLL tail block takes a helical conformation in high methanol content, the resulting head‐tail type block copolymer has a defined three‐dimensional structure like that of a protein molecule. Self‐assemblies of such block copolymers having a totally fixed molecular shape spontaneously form polymersome‐like self‐assemblies with an extremely narrow size distribution through converging to a thermodynamically stable assembling state. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 1217–1223, 2009     

Oxime Side‐Chain Cross‐Links in an α‐Helical Coiled‐Coil Protein: Structure,Thermodynamics, and Folding‐Templated Synthesis of Bicyclic Species

Covalent side‐chain cross‐links are a versatile method to control peptide folding, particularly when α‐helical secondary structure is the target. Here, we examine the application of oxime bridges, formed by the chemoselective reaction between aminooxy and aldehyde side chains, for the stabilization of a helical peptide involved in a protein–protein complex. A series of sequence variants of the dimeric coiled coil GCN4‐p1 bearing oxime bridges at solvent‐exposed positions were prepared and biophysically characterized. Triggered unmasking of a side‐chain aldehyde in situ and subsequent cyclization proceed rapidly and cleanly at pH 7 in the folded protein complex. Comparison of folding thermodynamics among a series of different oxime bridges show that the cross links are consistently stabilizing to the coiled coil, with the extent of stabilization sensitive to the exact size and structure of the macrocycle. X‐ray crystallographic analysis of a coiled coil with the best cross link in place and a second structure of its linear precursor show how the bridge is accommodated into an α‐helix. Preparation of a bicyclic oligomer by simultaneous formation of two linkages in situ demonstrates the potential use of triggered oxime formation to both trap and stabilize a particular peptide folded conformation in the bound state.     

Molecular-dynamics simulation of crystallization in helical polymers

The molecular mechanism of crystallization in helical polymers is a fascinating but very difficult subject of research. We here report our recent efforts toward better understanding of the crystallization in helical polymers by use of molecular-dynamics simulation. With straightforward approaches to the problem being quite difficult, we adopt a different strategy of categorizing the helical polymers into two distinct types: one type is a simple bare helix which is essentially made of backbone atomic groups only and has smoother molecular contours, and the other is a more general helix having large side groups that would considerably hamper molecular motion and crystallization. Both types of helical polymers are here constructed by use of the united atom model, but they show quite distinct crystallization behavior; the crystallization of the former-type polymer is rather fast, while that of the latter-type polymer is extremely slow. We find that the bare helix, when rapidly cooled in free three-dimensional space, freezes into partially ordered state with limited intramolecular and intermolecular orders, and that remarkable improvement of order and growth of an ordered chain-folded crystallite occurs by very long-time annealing of the partially ordered state around the apparent freezing temperature. We also study crystallization of the bare helix upon a growth surface; the crystallization in this case proceeds much faster through highly cooperative process of the intermolecular and the intramolecular degrees of freedom. On the other hand, crystallization of the realistic model of isotactic polypropylene (iPP) having pendant methylene groups is found to be extremely sluggish. By restricting the spatial dimension of the system thereby fully disentangling the chain, we observe that the molecule of iPP crystallizes very quickly onto the crystal substrate made of the same iPP chain. Quite remarkable is that the molecule of iPP strictly recognizes the helical sense of the substrate chain and efficiently selects its chirality during crystallization.     

Single‐Molecule Force Spectroscopy on Carrageenan by Means of AFM

A marked difference in force‐extension curves is observed for carrageenan before and after adding NaI buffer in single‐molecule force spectroscopy by means of atomic force microscopy (AFM). The salt‐induced helix conformation in carrageenan treated with an 0.1 M NaI solution was unfolded under the external force, and a long plateau about 300 pN high could be observed in the force‐extension curves.     

Solution properties of exocellular polysaccharides of rhizobium leguminosarum. Static and dynamic light-scattering: Characterization in dilute solution

Three polysaccharides, Rhizobium leguminosarum 8002 EPS(I), Rhizobium trifolii TA1-EPS (II), Rhizobium leguminosarum 127K87 EPS (III), produced by bacteria of Rhizobium genus have been investigated by static and dynamic light scattering combined with chirooptical measurements. All three polymers have the same backbone but differ in the length of the side chains and in the content of minor substituents. An isothermal conformational transition coil → helix was observed with I and II by adding salt (NaCl). The molecular parameters of the polysaccharides in the ordered state were determined by light-scattering data. Increasing the ionic strength a shrinking of the helix was observed accompanied by a corresponding decrease in the radius of gyration. An extraordinary chain stiffness in terms of Kuhn segment lengths was found in both cases, similar to that already observed for other microbial polysaccharides. In the case of III no disorder → order transition was induced by the salt, and the scattering behavior corresponds to that of a rather flexible polymer with a characteristic ratio C_∞ = 24. The incapability of III to form a helical structure is attributed to the effect of the very long side chain. The analysis of the time correlation functions revealed typical flexible chain behavior for all three polysaccharides. This behavior for the two ordered polymers is in agreement with a recent theory by Maggs and is due to bending modes of the rods. ©1995 John Wiley & Sons, Inc.     

Iota-carrageenan/casein micelles interactions: evidence at different scales

The effect of temperature on the behaviour of iota-carrageenan (CI) 0.1 wt.%/casein micelles (CM) 0–5 wt.% mixtures has been studied using three techniques: confocal laser scanning microscopy (CLSM), differential scanning calorimetry (DSC) and spectrophotometry. The microscopy clearly shows that those mixed systems separate in two phases, one being enriched in CM. It has been shown that the CM concentration seems to have an effect on the extent of the phase separation phenomenon. The DSC experiments show that addition of CM modifies the helix to coil transition temperature of carrageenan. The enthalpy of melting of helices decreases as the CM concentration increases, and the peak is shifted towards higher temperature. Local electrostatic interactions between carrageenan chains and CM have been studied by a spectrophotometric method using methylene blue (MB) properties of absorption. The absorption spectra of MB in presence of CI and CM were compared with the one of MB in presence of carrageenan alone at temperatures above and below the carrageenan coil to helix transition. The modifications of the spectrum by addition of CM are discussed in terms of interactions and rigidification of the carrageenan chains.