A self assembled molecular zipper based on a perfluorophenyl-phenyl diacetylene motif

The synthesis and characterization of a molecular rod consisting of a pentafluorophenyl and a para-dodecylphenyl subunit linked by a diacetylene and its large area self assembly into perfect parallel lines consisting of interlocked molecular rods are reported and discussed.     

Recognition through self-assembly. A quadruply-hydrogen-bonded, strapped porphyrin cleft that binds dipyridyl molecules and a [2]rotaxane

Quadruply-hydrogen-bonded porphyrin homodimer Zn1.Zn1 has been designed, assembled, and evaluated as a supramolecular cleft-featured receptor for its ability to bind dipyridyl guests in chloroform-d. Monomer Zn1 consists of a 2-ureidopyrimidin-4(1H)-one unit, which was initially reported by Meijer et al., and a zinc porphyrin unit. The zinc porphyrin is strapped with an additional aliphatic chain for controlling the atropisomerization of porphyrin. The 2-ureidopyrimidin-4(1H)-one unit dimerizes exclusively in chloroform even at the dilute concentration of 10(-)(4) M, while the two "strapped" zinc porphyrin units of the homodimer provide additional binding sites for selective guest recognition. (1)H NMR studies indicate that the new homodimer Zn1.Zn1 adopts an S-type conformation due to strong donor-acceptor interaction between the electron-rich porphyrin units and the electron-deficient 2-ureidopyrimidin-4(1H)-one unit. (1)H NMR, UV-vis, and vapor pressure osmometry investigations reveal that Zn1.Zn1 could function as a new generation of assembled supramolecular cleft, to be able to not only efficiently bind linear dipyridyl molecules 14-17, resulting in the formation of stable termolecular complexes, with K(aasoc) values ranging from 3.8 x 10(6) to 8.9 x 10(7) M(-)(1), but also strongly complex a hydrogen-bond-assembled [2]rotaxane, 18, which consists of a rigid fumaramide thread and a pyridine-incorporated tetraamide cyclophane, with K(aasoc) = 1.2 x 10(4) M(-)(1). (1)H NMR competition experiments reveal that complexation to the dipyriyl guests also promotes the stability of the quadruply-hydrogen-bonded dimeric receptor.     

A molecular receptor that selectively binds dihydrogen phosphate

A dihydrogen phosphate-binding receptor (4) containing both hydrogen bond donors and acceptors has been prepared by incorporating two pyridyl units to a preorganized biindole scaffold. Receptor 4 strongly and selectively binds dihydrogen phosphate via multiple hydrogen bonds with an association constant (K_a) of 1.1 × 10⁵ M⁻¹ in CH₃CN at 22 ± 1 °C. The high selectivity toward the target anion over other anions is proven to be due to two additional hydrogen bonds between the phosphate hydroxyl groups and the pyridyl nitrogens, each of which increases the complex stability by the free energy of 1.6 kcal/mol. This result clearly demonstrates that a selective receptor for a polyprotic anion can be developed by combining both hydrogen bond donors and acceptors.     

A porphyrin nanobarrel that encapsulates C(60)

A porphyrin nanobarrel, 1, that can encapsulate C(60) effectively was prepared via a concise coupling route. The structures of both 1 and C(60)@1 were confirmed by single-crystal X-ray diffraction analysis.     

A ruthenium dipyridophenazine complex that binds preferentially to GC sequences

Uniquely, a Ru11 complex of the dppz ligand shows a preference for GC sequences of DNA.     

A new type of chiral porphyrin: Organopalladium porphyrins with chiral chelating diphosphine ligands

Peripherally palladated Ni(II) porphyrins have been prepared using enantiopure chiral chelating diphosphines as supporting ligands on the attached Pd(II) fragment. Both enantiomers of the following complexes have been obtained in good yields, using oxidative addition of the bromoporphyrin starting material 5-bromo-10,20-diphenylporphyrinatonickel(II) (NiDPPBr (1)) to the [Pd⁰L] complex generated in situ from Pd₂dba₃ and the chiral ligand L: [PdBr(NiDPP)(CHIRAPHOS)] (2a,b) [CHIRAPHOS = 2,3-bis(diphenylphosphino)butane], [PdBr(NiDPP)(Tol-BINAP)] (3a,b) [Tol-BINAP) = 2,2′-bis(di-p-tolylphosphino)-1,1′-binaphthyl] and [PdBr(NiDPP)(diphos)] [diphos = 1,2-bis(methylphenylphosphino)benzene] (4a,b). The induced asymmetry in the porphyrin was readily detected by ¹H NMR and CD spectroscopy. The porphyrin chiroptical properties are strongly dependent upon the structure of the chiral ligand, such that a monosignate CD signal, and symmetric and asymmetric exciton couplets were observed for 4a, 2b, and 3a,b, respectively.     

A bioinspired construct that mimics the proton coupled electron transfer between P680*+ and the Tyr(Z)-His190 pair of photosystem II

A bioinspired hybrid system, composed of colloidal TiO2 nanoparticles surface modified with a photochemically active mimic of the PSII chlorophyll-Tyr-His complex, undergoes photoinduced stepwise electron transfer coupled to proton motion at the phenolic site. Low temperature electron paramagnetic resonance studies reveal that injected electrons are localized on TiO2 nanoparticles following photoexcitation. At 80 K, 95% of the resulting holes are localized on the phenol moiety and 5% are localized on the porphyrin. At 4.2 K, 52% of the holes remain trapped on the porphyrin. The anisotropic coupling tensors of the phenoxyl radical are resolved in the photoinduced D-band EPR spectra and are in good agreement with previously reported g-tensors of tyrosine radicals in photosystem II. The observed temperature dependence of the charge shift is attributed to restricted nuclear motion at low temperature and is reminiscent of the observation of a trapped high-energy state in the natural system. Electrochemical studies show that the phenoxyl/phenol couple of the model system is chemically reversible and thermodynamically capable of water oxidation.     

A homochiral 3D covalent framework assembled from vertical chiral layers with achiral bridging ligands

A novel metal-organic coordination polymer, [Cd(HPT)₂(4,4′-bpy)]_n (PT=phthalate), has been hydrothermally synthesized and characterized by elemental analysis, IR, TG and single crystal X-ray diffraction. Colorless crystals crystallized in the tetragonal system, space group I4₁22, a=8.294(5), b=8.294(5), c=33.7535(17) Å, V=2321.8(18) Å³, Z=4 and R=0.0207. The structure of the compound exhibiting a homochiral 3D covalent framework based on achiral bridging ligands has been constructed by an alternating assembly of vertical chiral layers consisting of homochiral helices.     

A hexapeptide motif that electrostatically binds to the surface of titanium

A hexapeptide motif, RKLPDA, that recognizes the surface of titanium was identified from a peptide phage selection. Mutational analyses showed electrostatic interaction was a major factor in the binding, paving a new way to modify the surface of Ti with active biomolecules.     

A piezoelectric quartz crystal sensor array self assembled calixarene bilayers for detection of volatile organic amine in gas

P-tert-butylcalix[n]arenes (n=4, 6, 8, abbreviated as CA[4], CA[6], CA[8], respectively) were immobilized on the Au surface of the piezoelectric quartz crystal by the reaction between CA[n] and the acid chloride terminated mercaptoacetic acid (MAA) self assembled monolayers to form MAA/CA[n] bilayers. The sensing films were not only immobilized easily and reproducibly, but also used to improve the reversibility of the sensor signal. The response characteristics show the response of CA to organic amine attributes to specific interaction between CA[n] (host) and organic amines (guest). The frequency shifts of n-butylamine and iso-butylamine are much larger than tert-butylamine and diethylamine because of shape-selection and hydrogen bonding. Compared to CA[6] and CA[4], CA[8] has highest sensitivity to organic amine due to having more flexibility to accommodate guest molecules. A sensor array with three-layer back-propagation neural network was applied to detect the binary mixture of n-butylamine in the range of 7.14–142 μl l⁻¹ and iso-butylamine in the range of 7.14–57 μl l⁻¹. The optimum values of learning rate (0.15) and momentum term (0.8) were determined by experiment. The best epoch of training was 1098. The root mean square error of prediction was 1.69 (μl l⁻¹) for n-butylamine, and 1.42 (μl l⁻¹) for iso-butylamine.     

A hydrogen-bonding receptor that binds cationic monosaccharides with high affinity in methanol

A dicarboxylate host (1) binds cationic monosaccharides such as D-glucosamine HCl (2), D-galactosamine-HCl (3), and D-mannosamine-HCl (4) with high affinity (K1 = 8.0 x 10(4)-2.0 x 10(5) M(-1)) in methanol. In circular dichroism (CD) spectroscopy a positive exciton-coupling band was observed near 290 nm; this indicates that the saccharides are recognized by multiple point interactions. Since the corresponding neutral monosaccharides are not significantly bound, one may conclude that complex formation is primarily due to the electrostatic interaction between NH3+ in the guest and one carboxylate in the host and secondarily due to hydrogen-bonding interactions of OH groups with the other carboxylate and/or nitrogen bases. Molar ratio plots and Job plots indicate that host 1 and cationic monosaccharide guests form CD-active, pseudo-cyclic 1:1 complexes at low guest concentration followed by the formation of CD-silent, acyclic 1:2 1-saccharide complexes at high guest concentration. The possible binding modes are discussed in detail on the basis of molecular mechanics calculations and chemical shift changes in 1H NMR spectra. The results of competition experiments with several cationic reference compounds bearing fewer OH groups than 2-4 are consistent with the proposed binding model. Thus, the present study is a rare example of saccharide recognition in a protic solvent, where in general, hydrogen-bonding interactions are rarely useful because of strong solvation energy. These are apparently the strongest saccharide complexes involving noncovalent interactions between host and guest. We believe that the findings are significant as a milestone toward development of new saccharide recognition systems ultimately useful in aqueous solution.     

A convenient synthesis of long-chain 4-substituted benzyloxycarbonyl alkanethiols for the formation of self assembled monolayers on metal substrates

New 4-substituted benzyl esters of 16-mercaptohexadecanoic acid were prepared by developing a practicable synthetic procedure and using readily available staring materials. The compounds synthesized have been characterized by NMR, MS, IR spectra and elemental analysis. The mercapto derivatives are precursors for the formation of self-assembled monolayers on metal substrates. Dedicated to Professor Dr. Manfred Hesse on the occasion of his 70 ^th birthday     

A negative temperature dependence of the electron self-exchange rates of zinc porphyrin pi radical cations

The one-electron oxidation of ZnT(t-Bu)PP (T(t-Bu)PP2- = 5,10,15,20-tetrakis(3,5-di-tert-butylphenyl)porphyrin dianion) by one equivalent of Ru(bpy)33+ (bpy = 2,2'-bipyridine) results in quantitative formation of ZnT(t-Bu)PP*+ which is detected by ESR. In the presence of excess ZnT(t-Bu)PP, the ESR line width becomes broader with increasing ZnT(t-Bu)PP concentration due to the electron self-exchange between ZnT(t-Bu)PP*+ and ZnT(t-Bu)PP. The line width of the ESR signal of ZnT(t-Bu)PP*+ becomes broader as the temperature is decreased from 313 to 233 K. This indicates that the electron self-exchange reaction becomes faster at a lower temperature. The substituent and solvent effects on such a negative temperature dependence of the electron self-exchange rates are reported.     

Photoinduced electron transfer in a triad that can be assembled/disassembled by two different external inputs. Toward molecular-level electrical extension cables

We have designed, synthesized, and investigated a self-assembling supramolecular system which mimics, at a molecular level, the function performed by a macroscopic electrical extension cable. The system is made up of three components, 12+, 2-H3+, and 3. Component 12+ consists of two moieties: a [Ru(bpy)3]2+ unit, which plays the role of an electron donor under light excitation, and a DB24C8 crown ether, which fulfills the function of a socket. The wire-type component 2-H3+ is also composed of two moieties, a secondary dialkylammonium-ion center and a bipyridinium unit, which thread into the DB24C8 crown-ether socket of 12+ and the 1/5DN38C10 crown-ether socket 3, respectively. The photochemical, photophysical, and electrochemical properties of the three separated components, of the 12+ superset 2-H3+ and 2-H3+ subset 3 dyads, and of the 12+ superset 2-H3+ subset 3 triad have been investigated in CH2Cl2 solution containing 2% MeCN. Reversible connection/disconnection of the two plug/socket systems can be controlled independently by acid/base and redox stimulation. The behavior of the various different dyads and triad has been monitored by light absorption and emission spectroscopies, as well as by electrochemical techniques. In the fully connected 12+ superset 2-H3+ subset 3 triad, light excitation of the [Ru(bpy)3]2+ unit of component 12+ is followed by electron transfer (k = 2.8 x 108 s-1) to the bipyridinium unit of component 2-H3+, which is plugged into component 3. Possible schemes to obtain improved molecular-level electrical extension cables are discussed.     

A directly fused tetrameric porphyrin sheet and its anomalous electronic properties that arise from the planar cyclooctatetraene core

Oxidation of a directly meso-meso linked cyclic porphyrin tetramer 2 gave a porphyrin sheet 3. The symmetric square structure of 3 is indicated by its simple 1H NMR spectrum that exhibits only two signals for the porphyrin beta-protons. The absorption spectrum of 3 displays characteristic Soret-like broad bands and weak Q-bands, and its magnetic circular dichroism (MCD) spectrum exhibits a negative Faraday A term at the 762 nm band as a rare case, indicating the absorption as a transition from a nondegenerate level to a degenerate level. A slightly longer S1-state (1.1 ps) and smaller TPA cross section (2750 GM) than a tetrameric linear porphyrin tape also indicate its unique electronic properties. The porphyrin sheet 3 forms stable 1:2 complexes with guest molecules G1 and G2, whose 1H NMR spectra exhibit remarkable downfield shifts for the guest protons that are located just above the cyclooctatetraene (COT) core of 3, whereas the imidazolyl protons bound to the zinc(II) porphyrin local cores are observed at slightly upfield positions. These results have been qualitatively accounted for in terms of the presence of a strong paratropic ring current around the COT core that propagates through the whole pi-electronic network of 3, hence competing with and cancelling the weak diatropic ring currents of the local zinc(II) porphyrins. This explanation was supported by DFT calculation performed at the GIAO-B3LYP/6-31G level, which indicated large positive NICS values within the COT core and small NICS values within the local zinc(II) porphyrins.     

A Schiff base expanded porphyrin macrocycle that acts as a versatile binucleating ligand for late first-row transition metals

The coordination chemistry of the Schiff base polypyrrolic octaaza macrocycle 1 toward late first-row transition metals was investigated. Binuclear complexes with the divalent cations Ni(II), Cu(II), and Zn(II) and with the monovalent cation Cu(I) were prepared and characterized. Air oxidation of the Cu(I) ions in the latter complex to their divalent oxidation state resulted in a change in the coordination mode relative to the macrocycle.     

Control of electron acceptor ability with ligands (L) in photoinduced electron transfer from zinc porphyrin or zinc phthalocyanine to [Ru3(mu3-O)(mu-CH3COO)6L3]+

Photoinduced electron-transfer processes from the excited triplet states of zinc tetraphenylporphyrin (3ZnTPP*) or zinc tetra-tert-butylphthalocyanine (3ZnTBPc*) to oxo-acetato-bridged triruthenium clusters [Ru3(mu3-O)(mu-CH3CO2)6(L)3]+ have been confirmed by nanosecond laser flash photolysis in the visible and near-IR regions. The rise of the transient absorption spectra of the radical cations of ZnTPP and ZnTBPc and the reduced form of the oxo-acetato-bridged triruthenium cluster ([Ru3(mu3-O)(mu-CH3CO2)6(L)3]0) were observed with the concomitant decays of 3ZnTPP* or 3ZnTBPc*. The evaluated rate constants (kET) and quantum yields (PhiET) for electron-transfer were increased with the order of electron-withdrawing ability of the ligands (L) coordinated to the Ru atoms, 4-cyanopyridine > triphenylphosphine > pyridine > 4-(dimethylamino)pyridine, which is the order of promoting the electron-accepting ability of [Ru3(mu3-O)(mu-CH3CO2)6(L)3]+. The PhiET values for 3ZnTPP* were lower than those for 3ZnTBPc*, suggesting the presence of competitive processes such as energy transfer process from 3ZnTPP* to the triplet states of [Ru3(mu3-O)(mu-CH3COO)6(L)3]+. For the back electron-transfer process, second-order kinetics indicates that the radical cations of ZnTPP or ZnTBPc and [Ru3(mu3-O)(mu-CH3COO)6(L)3]0 return to the original system after solvation in polar solvents at a diffusion controlled limit without side reactions, providing reversible photosensitizing intermolecular electron-transfer systems.     

A synthetic miniprotein that binds specific DNA sequences by contacting both the major and the minor groove

Attachment of a slightly modified basic region of a bZIP protein (GCN4) to a distamycin-related tripyrrole provides a bivalent system capable of binding with high affinity to specific DNA sequences. Appropriate adjustment of the linker between the two units has led to a hybrid that binds a 9 base-pair-long DNA site (TTTTATGAC) with low nanomolar affinity at 4 degrees C. Circular dichroism and gel retardation studies indicate that the binding occurs by simultaneous insertion of the bZIP basic region into the DNA major groove and the tripyrrole moiety into the minor groove of the flanking sequence. Analysis of hybrids bearing alternative linkers revealed that tight, specific binding is strongly dependent on the length and nature of the connecting unit.     

The SON2 mechanism : A non-oxidative reaction that is initiated by electron transfer oxidation

Under oxidizing conditions, aromatic chloro and fluoro compounds undergo what formally are typical nucleophilic substitution reactions with surprising ease. As an example, 4-fluoroanisole is converted the 4-acetoxyanisole by anodic or metal ion oxidative initiation, and the reaction is shown to be a chain process. It is proposed that a mechanism analogous to that of the reductively initiated S_RN1 mechanism operates: The substrate is oxidized to a radical cation by the initiator system, and the radical cation then undergoes ipso attack by the nucleophile. In the third step, the leaving group leaves as a species at the same oxidation level as the nucleophile, giving the radical cation of the product to be formed. A chain transfer step involving this ion and a new substrate molecule then completes the propagation sequence.Previously reported cases of this phenomenon are discussed and the individual steps of the chain reaction are considered in terms of their thermochemistry. It is concluded that the S_ON2 mechanism should be more favoured with easily oxidizable substrates.