三聚氰胺结构和热力学性质的密度泛函理论研究

采用Materials Studio 软件中的DMol~3模块对三聚氰胺的结构和性质进行了理论研究.得到了分子的几何构型、振动频率、各原子上的电荷分布、热力学、以及Fukui指数和前线分子轨道.计算结果表明:三聚氰胺分子中的C原子易得电子,是亲核试剂进攻点,而胺基上的N原子因含孤对电子是亲电反应中心.     

青蒿素及其衍生物抗疟活性的密度泛函理论研究

为了深入研究青蒿素及其衍生物的抗疟活性和分子结构之间的关系,运用密度泛函理论B3LYP方法,以6-31G*为基组对青蒿素及其衍生物二氢青蒿素、蒿甲醚和青蒿琥酯进行了优化计算.从分子的几何构型、NBO电荷及前线轨道能等方面分析了青蒿素及其衍生物的抗疟活性与结构之间的关系.青蒿素及其衍生物结构中的过氧桥键是其抗疟作用的活性位,O17和O_20带负电荷越多、ΔE_(LUMO-HOMO)越低、E_(HOMO)能级越高,分子的抗疟活性越强.结果表明,4种化合物的抗疟活性顺序为:青蒿素二氢青蒿素蒿甲醚青蒿琥酯,与临床实验结果相吻合.     

笼状碳氢化合物五环[5.4.0.02，6.03，10.05，9]十一烷的密度泛函理论研究

运用密度泛函理论,在B3LYP/6-31G**水平上,对典型高能量密度笼状化合物五环[5.4.0.02,6.03,10.05,9]十一烷（PCU）进行了理论计算。基于上述水平全优化分子结构的键长、键角及二面角求得PCU分子的张力能;用Monte-Carlo方法得到化合物的理论密度;由简谐振动分析求得IR谱,计算结果与实验良好相符;基于振动分析,由统计热力学求得PCU的热力学性质;采用GIAO方法求得PCU的13C-NMR和1H-NMR谱的化学位移,计算结果与实验结果的线性相关性均大于0.99,计算结果可辅助解析PCU的NMR谱。     

白花丹素分子结构和红外光谱的密度泛函理论研究

白花丹素(5-羟基-2-甲基-1,4-萘醌)是中药白花丹的主要成分之一,是一种具有抗肿瘤活性的萘醌类化合物.采用密度泛函(DFT)B3LYP/6-31+G(d)方法对白花丹素分子的几何构型进行全优化,得到其几何构型参数,进一步计算得到白花丹素的红外振动光谱.对计算得到的振动频率进行归属和解析并与文献值比较,发现理论计算...     

全氟化合物热力学性质的密度泛函理论研究

用密度泛函理论B3LYP方法,在6-31G基组水平上,对12个全氟化合物分子进行了全优化计算,得到其分子零点振动能EZPV、热能校正值Eth、恒容热容CVΦ、标准熵SΦ以及配分函数lgQ等热力学参数,并计算了这些分子的电性拓扑状态指数Em.通过最佳变量子集回归建立了电性拓扑状态指数与热力学参数之间的QSPR模型,模型的相关系数R2分别为1.000,1.000,1.000,0.999和1.000,采用逐一剔除法得到的交叉验证相关系数R2cv分别为0.999,1.000,1.000,0.999和1.000,利用建构的数学模型得到热力学性质的相对平均误差分别为0.43%,0.41%,0.46%,0.41%和0.71%.从方程可以看出,F原子取代基数量是影响全氟化合物分子热力学参数大小的主要因素,检验证明所建模型具有良好的稳定性和预测能力.     

结合密度泛函理论的橙皮素及其包合物的红外和拉曼光谱研究

本文通过密度泛函理论(DFT)结合实验研究了橙皮素的红外和拉曼光谱,采用B3LYP/6-311+G(d,p)基组对其红外和拉曼光谱进行了计算,计算结果和实验结果基本一致。本文还利用红外及拉曼光谱对橙皮素与β-环糊精(β-CD)形成的包合物进行了分析,证明了橙皮素通过氢键作用嵌入β-CD的疏水空腔中而形成包合物,从而验证了拉曼光谱可以作为一种新型的验证包合物形成的方法。该研究为橙皮素及其包合物的鉴定提供了一种简单、快捷、无损测量的优良方法。     

1,5-萘二胺衍生物的密度泛函理论研究

用量子化学的密度泛函理论方法,在B3LYP/6 31G水平上,对N,N′ 二苯基 N,N′ 二(1 萘基) 1,5 萘二胺(NPN)进行了理论计算.结果发现:NPN有两个平衡构型(trans NPN,cis NPN),trans NPN比cis NPN稳定,谐振动频率分析表明它们都是稳定构型.在PM3/CIS水平上计算了它们的电子光谱,得到了由基态到各激发态的垂直跃迁能和相应的振子强度,计算结果与实验符合得很好.     

多氯联苯系列化合物的热力学性质和稳定性的密度泛函理论研究

在B3LYP/6-31G*水平上计算了218个多氯联苯系列化合物(PCB), 得到分子总能量(E_T)、焓(H°)、熵(S°)、自由能(G°)、零点振动能(E_ZPV)、恒容热容(C_V°)和热能校正值(E_th), 研究了这些参数与氯原子的取代数目及取代位置的关系.氯原子置换在不同的位置使E_T, H°和G°数值增加的顺序为: 2(6)位>>3(5)位＞4位, 即置换在2(6)位最不稳定; 两个氯原子在同一苯环比分别处于两个苯环的E_T, H°和G°增大, 增加的顺序为: 邻位>>间位＞对位, 即相互处于邻位最不稳定. 每增加1个氯原子, S°增大约30 J•(mol•K)^－1, E_th减小约22.2 kJ•mol^－1, E_ZPV减小约25.5 kJ•mol^－1, C_V°增大约16 J•(mol•K)^－1. 根据异构体自由能的相对大小, 从理论上求得异构体的相对稳定性顺序.     

儿茶素结构和振动光谱的密度泛函理论研究

本文利用密度泛函理论方法B3LYP在6-311 G(d,p)水平上研究了儿茶素及其异构体表儿茶素分子的几何构型,计算结果与实验所得结构参数一致.计算了儿茶素分子平衡构型下的力常数,使用Wilson的GF矩阵方法计算了振动基频以及相应的势能分布,据此结合理论计算的光谱强度,对儿茶素分子的振动基频进行了完善合理的理论归属.     

多溴二苯并呋喃的热力学性质和稳定性的密度泛函理论研究

在B3LYP/6-31G*水平上对二苯并呋喃和135个多溴二苯并呋喃系列化合物(PBDF)进行了全优化计算和振动分析, 得到各分子的总能量(E_T)、焓(H⁰)、熵(S⁰)、自由能(G⁰)和恒容热容(C_V⁰), 研究了这些参数与溴原子的取代数目及取代位置的关系. 溴原子置换在不同位置时, 使E_T, H⁰和G⁰数值增加大小次序为: 1(9)＞3(7)＞2(8)＞4(6), 即置换在1(9)位最不稳定; 两个溴原子处在同一苯环时, E_T, H⁰和G⁰数值也都增加, 增加的顺序为: 邻>>间＞对, 即相互处于邻位最不稳定. 而且有两个溴原子同时取代在1和9位时, 使H⁰和G⁰的数值的增加比取代在邻位、间位和对位时的增加值都大. 每增加1个溴原子, S⁰增大约40.1 J•mol^－1•K^－1, C_V⁰增大约16.3 J•mol^－1•K^－1. 同时, 设计等键反应, 计算了各异构体的标准生成热(H_f⁰)和标准生成自由能(G_f⁰). 根据异构体自由能的相对大小, 从理论上求得异构体的相对稳定性顺序, 各异构体组中的稳定性顺序与PCDF系列的稳定性顺序基本一致.     

靛蓝及其取代物的密度泛函理论研究

运用量子化学中密度泛函理论(DFT)方法,在B3LYP／6-31G^ 水平上对靛蓝及其芳环4,4′-,5,5′-,6,6′-,7,7′-取代衍生物进行理论计算．探讨了F,Cl,Br,NO2,CH3O,CH3在不同位置的取代对分子的几何构型、电子结构和电子光谱的影响,获得与实验结果相一致的结论．还用含时密度泛函理论(TD-DFT)方法在相同水平计算其电子光谱．结果表明靛蓝及其芳环取代衍生物的最低激发单重态(S1)均源自HOMO-LUMO(π-π^*)跃迁．     

Crystal Structure and Density Functional Theory Studies of （p-Methoxyphenyl） Thiosemicarbazide

1 INTRODUCTION Recently, the discoveries of antitumor effects ofinorganic complexes, especially of metal complexes,and their applications for curing cancer diseaseshave received increasing attention[1]. As a ligandwith potential S and N donors, thiosem…     

Density Functional Theory Analysis of Anthraquinone Derivative Hydrogenation over Palladium Catalyst

A density functional theory (DFT) analysis was conducted on the hydrogenation of 2‐alkyl‐anthraquinone (AQ), including 2‐ethyl‐9,10‐anthraquinone (eAQ) and 2‐ethyl‐5,6,7,8‐tetrahydro‐9,10‐anthraquinone (H₄eAQ), to the corresponding anthrahydroquinone (AQH₂) over a Pd₆H₂ cluster. Hydrogenation of H₄eAQ is suggested to be more favorable than that of eAQ owing to a higher adsorption energy of the reactant (H₄eAQ), lower barrier of activation energy, and smaller desorption energy of the target product (2‐ethyl‐5,6,7,8‐tetrahydro‐9,10‐anthrahydroquinone, H₄eAQH₂). For the most probable reaction routes, the energy barrier of the second hydrogenation step of AQ is circa 8 kcal mol^?1 higher than that of the first step. Electron transfer of these processes were systematically investigated. Facile electron transfer from Pd₆H₂ cluster to AQ/AQH intermediate favors the hydrogenation of C=O. The electron delocalization over the boundary aromatic ring of AQ/AQH intermediate and the electron‐withdrawing effect of C=O are responsible for the electron transfer. In addition, a pathway of the electron transfer is proposed for the adsorption and subsequent hydrogenation of AQ on the surface of Pd₆H₂ cluster. The electron transfers from the abstracted H atom (reactive H) to a neighbor Pd atom (Pd_H), and finally goes to the carbonyl group through the C₄ atom of AQ aromatic ring (C₄).     

六硝基芪衍生物的红外光谱和热力学性质的理论研究

用量子化学密度泛函理论方法,在B3LYP/6-31G*水平下,对六硝基芪衍生物进行了几何构型全优化和电子结构计算。通过振动分析,求得它们的红外光谱并作归属。将理论计算IR谱与已知实验结果进行比较,表明本文所提供的计算结果是可靠的。对谐振频率以0.96进行标度后基于统计热力学原理求得它们的热力学性质,探讨了热力学性质随硝基数、氨基数、羟基数和温度变化的规律,发现有很好的线性关系,体现了很好的基团加和性。     

3-单酰胺喹唑啉酮衍生物的表征及密度泛函理论研究

Several 3-aminoquinazolin-4-(3H)-one derivatives were synthesized and characterized.Using proton nuclear magnetic resonance (NMR) spectra,we have investigated the barriers to rotation around the N ― N bond as a function of temperature.Changes in the NMR spectra at high temperatures are explained in terms of hindered rotations of the N ― N bond.Free energies of activation for the rate determining stereochemical process were calculated to be as high as 67-75 kJ · mol-1.Ground state molecular geometries and vibrational frequencies were calculated using the HF/6-31G and B3LYP/6-31G level of theories.The optimized bond lengths and bond angles are in good agreement with experimental values at both theoretical levels.     

Vibrational and Thermodynamic Properties of 2,2',4,4',6,6'-Hexanitroazobenzene and Its Derivatives: A Density Functional Theory Study

HNAB (2,2′,4,4′,6,6′‐hexanitroazobenzene) and its derivatives have been optimized to obtain their molecular geometries and electronic structures by using density functional theory at the B3LYP/6‐31G* level. Their IR spectra have been computed and assigned by vibrational analysis. The strongest peaks are attributed to the N? O asymmetric stretching of nitro groups. Its central position moves towards higher frequency as the number of nitro groups increases. It is obvious that there is hydrogen‐bonding between amino and nitro groups in amino derivatives. Based on the frequencies scaled by 0.96 and the principle of statistical thermodynamics, the thermodynamic properties have been evaluated, which are linearly related with the temperature, as well as the number of nitro and amino groups, respectively, obviously showing good group additivity. And the thermodynamic functions for the nitro derivatives increase much more than those for the amino derivatives with the increase of the number of substituents. The values of heat of formation (HOF) for the nitro derivatives increase gradually with n, while those of the amino derivatives decrease smoothly with n.     

苯和苯胺类硝基衍生物的红外光谱和热力学性质的理论研究

用量子化学密度泛函理论方法,在B3LYP/6-31G*水平下,对苯和苯胺类硝基衍生物进行了几何构型全优化和电子结构计算。通过振动分析,求得它们的红外光谱并作归属。将理论计算IR谱与已知实验结果进行比较,表明本文所提供的计算结果是可靠的。对谐振频率以0.96进行标度后基于统计热力学原理求得它们的热力学性质,探讨了热力学性质随硝基数、氨基数和温度变化的规律,发现有很好的线性关系,体现了很好的基团加和性。     

A Theoretical Study on the Vibrational Spectra and Thermodynamic Properties for the Derivatives of 2,5-Dipicryl-1,3,4-oxadiazole with N3, ONO2, and NNO2 Groups

The derivatives of 2,5‐dipicryl‐1,3,4‐oxadiazole (DPO) were optimized to obtain their molecular geometries and electronic structures at the DFT‐B3LYP/6‐31G^* level. Their IR spectra were obtained and assigned by vibrational analysis. Compared with the experimental results, all the calculated IR data were found to be reliable. Based on the frequencies scaled by 0.96 and the principle of statistic thermodynamics, the thermodynamic properties were evaluated, which are respectively linearly related with the number of azido, nitrate and nitramine groups as well as the temperature, obviously showing good group additivity.     

A Density Functional Theory Study of Optical Rotation in Some Aziridine and Oxirane Derivatives

We present time-dependent density functional theory (TDDFT) calculations of the electronic optical rotation (ORP) for seven oxirane and two aziridine derivatives in the gas phase and in solution and compare the results with the available experimental values. For seven of the studied molecules it is the first time that their optical rotation was studied theoretically and we have therefore investigated the influence of several settings in the TDDFT calculations on the results. This includes the choice of the one-electron basis set, the exchange-correlation functional or the particular polarizable continuum model (PCM). We can confirm that polarized quadruple zeta basis sets augmented with diffuse functions are necessary for converged results and find that the aug-pc-3 basis set is a viable alternative to the frequently employed aug-cc-pVQZ basis set. Based on our study, we cannot recommend the generalized gradient functional KT3 for calculations of the ORP in these compounds, whereas the hybrid functional PBE0 gives results quite similar to the long-range correct CAM−B3LYP functional. Finally, we observe large differences in the solvent effects predicted by the integral equation formalism of PCM and the SMD variant of PCM. For the majority of solute/solvent combinations in this study, we find that the SMD model in combination with the PBE0 functional and the aug-pc-3 basis set gives the best agreement with the experimental values.