Multivariate analysis of reflectance spectra from propolis: Geographical variation in Romanian samples

The present study described reflectance spectroscopy as a suitable analytical tool to discriminate the floral origin of 39 Romanian propolis samples. Relevant differences between the UV-vis reflectance spectra of the investigated propolis samples within the 220-850 nm spectral range were found. The results obtained applying cluster analysis, principal component analysis and linear discriminant analysis to the digitized data of zero order, zero order normalized and first order derivative spectra support the reliability of this technique. In addition, the application of the linear discriminant analysis to the score matrices corresponding to the first principal components appeared to be an illuminating solution. Generally, the samples have been assigned to two large groups in a good agreement with their vegetal sampling location, samples originating from predominant forest area and samples originating from meadows. Within the first group, two subgroups were identified according to the dominant type of the forest, deciduous or resinous, while within the last group three subgroups were found according to the extend and variety of the meadow.     

Combining visible and near-infrared spectroscopy with chemometrics to trace muscles from an autochthonous breed of pig produced in Uruguay: a feasibility study

Visible (Vis) and near-infrared reflectance (NIR) spectroscopy combined with chemometrics was explored as a tool to trace muscles from autochthonous and crossbreed pigs from Uruguay. Muscles were sourced from two breeds, namely, the Pampa-Rocha (PR) and the Pampa-Rocha x Duroc (PRxD) crossbreed. Minced muscles were scanned in the Vis and NIR regions (400–2,500 nm) in a monochromator instrument in reflectance. Principal component analysis (PCA), discriminant partial least square regression (DPLS), linear discriminant analysis (LDA) based on PCA scores and soft independent modelling of class analogy (SIMCA) were used to identify the origin of the muscles based on Vis and NIR data. Full cross validation was used as validation method when classification models were developed. DPLS correctly classified 87% of PR and 78% of PRxD muscle samples. LDA calibration models correctly classified 87 and 67% of muscles as PR and PRxD, respectively. SIMCA correctly classified 100% of PR muscles. The results demonstrated the usefulness of Vis and NIR spectra combined with chemometrics as rapid method for authentication and identification of muscles according to the breed of pig.     

Study of gas-liquid partitioning of alkane solutes in several organic solvents by using principal component analysis and linear solvation energy relationships

Principal component analysis (PCA) was used to extract the number of factors which can describe the 737 gas-liquid partition coefficients of five linear, four branched, and two cyclic alkanes in 67 common solvents. Based on the reconstruction of partition coefficient data matrix, we concluded that the experimental dataset could readily be reduced to two relevant factors. Using only these two factors, there were no errors larger than 3%, 7 cases had errors larger than 2%, and in 34 cases, errors were between 1 and 2%. n-Hexane and ethylcyclohexane were chosen as the test factors, and all other partition coefficients were expressed in terms of these two test factors. Prediction of the logarithmic partition coefficient of these alkanes in seven chemically different solvents, which were originally excluded from the data matrix, was excellent: the root mean square error was 0.064, only in 11 cases the errors were larger than 1%, and only 3 had errors larger than 4%.Linear solvation energy relationships (LSERs) using both theoretical and empirical solvent parameters were used to explain the molecular interactions responsible for partition. Several combinations of parameters were tried but the standard deviations were not less than 0.31. This could be attributed to the model itself, imprecisions in the data matrix or in some of the LSER parameters. Solvent cohesive parameters and surface tension in combination with polarity-polarizability or dispersion parameters perform the best.Finally, the two principal component factors were rotated onto the most relevant physicochemical parameters that control the gas-liquid partitioning phenomena.     

Using principal component analysis for the study of the retention behaviour of phenol derivatives under reversed-phase conditions

Summary The retention time of 11 ring-substituted phenol derivatives was measured on six different reversed-phase HPLC columns and the log k, theoretical plate number (N) and asymmetry factor (F) values were calculated for each solutes on each column. The similarities and dissimilarities among the columns and solutes were elucidated by principal component analysis followed with nonlinear mapping technique and cluster analysis. Calculations indicated that the retention characteristics of porous graphitized carbon stationary phase considerably deviate from those of octadecyl- and hexyl-coated silica, octadecyl-coated polystyrene-divinylbenzene polymer and polybutadiene-coated alumina. The differences among these columns were markedly smaller. The retention behaviour of aminophenols differed from those of other phenol derivatives proving the importance of molecular polarity in the retention. It was established that the mode of calculation slightly modifies the similarity and dissimilarity among the columns and solutes, therefore, the use of more than one calculation method is proposed.     

Development of diagnostic models for canine osteoarthritis based on serum and joint fluid mid‐infrared spectral data using five different discrimination and classification methods

Osteoarthritis (OA) is an insidious joint disease that gradually leads to cartilage loss and the morphological impairment of other joint tissues. Therefore, early diagnosis and timely therapeutic intervention are of importance. Although there are a few diagnostic techniques used in clinics, these methods have various drawbacks. Infrared spectroscopy has emerged as an important analytical technique with wide applications in a variety of areas including clinical diagnosis. Research has shown that the presence of OA is associated with biochemical changes that are presumed to be reflected in serum or joint fluid. Hence, OA may be detected provided that serum or joint fluid is measured by infrared spectroscopy and appropriate data analysis methods are used to extract the diagnostic information from the infrared spectra. In this work, 5 discrimination and classification methods ([1] principal component analysis coupled with linear discriminant analysis, [2] principal component analysis coupled with multiple logistic regression, [3] partial least squares discriminant analysis, [4] regularized linear discriminant analysis, and [5] support vector machine) were used to build OA diagnostic models based on mid‐infrared spectra of serum and joint fluid. Useful diagnostic models were developed, indicating that infrared spectroscopy coupled with multivariate data analysis methods is very promising as a simple and accurate approach for OA diagnosis. The results also showed that models built from the 5 methods were different, as were the models' predictive performances. Therefore, choice of appropriate data analysis methods in model development should be taken into account.     

A feasibility study on the use of visible and short wavelengths in the near-infrared region for the non-destructive measurement of wine composition

The aim of this study was to explore the capability of spectroscopy in the visible (Vis) and short wavelength near-infrared (NIR) regions for the non-destructive measurement of wine composition in intact bottles. In this study we analysed a wide range of commercial wines obtained in Australia in different types of bottles (e.g. colours, diameters and heights), including different wine styles and varieties. Wine bottles were scanned in the Vis-NIR region (600–1,100 nm) in a monochromator instrument in transflectance mode. Principal component analysis (PCA) and partial least-squares (PLS) regression were used to interpret the spectra and develop calibrations for wine composition. Due to the relatively small number of samples available full cross-validation (leave-one-out) was used as validation. The coefficient of correlation in calibration and the standard error of cross-validation (SECV) were 0.67 (SECV: 0.48%), 0.83 (SECV: 4.01 mg L⁻¹), 0.70 (SECV: 28.6 mg L⁻¹) and 0.50 (SECV: 0.15) for alcohol content, total SO₂, free SO₂ and pH, respectively, in the set of wine samples analysed. These preliminary results showed that the assessment of wine composition by Vis and short wavelengths in the NIR is possible for either qualitative analysis (e.g. low-, medium- and high-quality grading), or for screening of composition during bottling and storage. Although low accuracy and precision were obtained for the chemical parameters routinely analysed in wine, calibration models for the chemical parameters were considered acceptable for screening purposes in terms of the standard errors obtained.     

Feature extraction and selection from volatile compounds for analytical classification of Chinese red wines from different varieties

This work was undertaken to evaluate whether it is possible to determine the variety of a Chinese wine on the basis of its volatile compounds, and to investigate if discrimination models could be developed with the experimental wines that could be used for the commercial ones. A headspace solid-phase microextraction gas chromatographic (HS-SPME-GC) procedure was used to determine the volatile compounds and a blind analysis based on Ac/Ais (peak area of volatile compound/peak area of internal standard) was carried out for statistical purposes. One way analysis of variance (ANOVA), principal component analysis (PCA) and stepwise linear discriminant analysis (SLDA) were used to process data and to develop discriminant models. Only 11 peaks enabled to differentiate and classify the experimental wines. SLDA allowed 100% recognition ability for three grape varieties, 100% prediction ability for Cabernet Sauvignon and Cabernet Gernischt wines, but only 92.31% for Merlot wines. A more valid and robust way was to use the PCA scores to do the discriminant analysis. When we performed SLDA this way, 100% recognition ability and 100% prediction ability were obtained. At last, 11 peaks which selected by SLDA from raw analysis set had been identified. When we demonstrated the models using commercial wines, the models showed 100% recognition ability for the wines collected directly from winery and without ageing, but only 65% for the others. Therefore, the varietal factor was currently discredited as a differentiating parameter for commercial wines in China. Nevertheless, this method could be applied as a screening tool and as a complement to other methods for grape base liquors which do not need ageing and blending procedures.     

A principal component analysis based method to discover chemical differences in comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometry (GCxGC-TOFMS) separations of metabolites in plant samples

Comprehensive two-dimensional gas chromatography combined with time-of-flight mass spectrometry (GC × GC-TOFMS) provides high resolution separations of complex samples with a mass spectrum at every point in the separation space. The large volumes of multidimensional data obtained by GC × GC-TOFMS analysis are analyzed using a principal component analysis (PCA) method described herein to quickly and objectively discover differences between complex samples. In this work, we submitted 54 chromatograms to PCA to automatically compare the metabolite profiles of three different species of plants, namely basil (Ocimum basilicum), peppermint (Mentha piperita), and sweet herb stevia (Stevia rebaudiana), where there were 18 chromatograms for each type of plant. The 54 scores of the m/z 73 data set clustered in three groups according to the three types of plants. Principal component 1 (PC 1) separated the stevia cluster from the basil and peppermint clusters, capturing 61.84% of the total variance. Principal component 2 (PC 2) separated the basil cluster from the peppermint cluster, capturing 16.78% of the total variance. The PCA method revealed that relative abundances of amino acids, carboxylic acids, and carbohydrates were responsible for differentiating the three plants. A brief list of the 16 most significant metabolites is reported. After PCA, the 54 scores of the m/z 217 data set clustered in three groups according to the three types of plants, as well, yielding highly loaded variables corresponding with chemical differences between plants that were complementary to the m/z 73 information. The PCA data mining method is applicable to all of the monitored selective mass channels, utilizing all of the collected data, to discover unknown differences in complex sample profiles.     

A fast and colorimetric sensor array for the discrimination of ribonucleotides in human urine samples by gold nanorods

Ribonucleotides are usually functioned as biomarkers to diagnose diseases and monitor the life activities in living organisms,and their discrimination is of great significance but challenging.Taking advantage of the unique characteristics of gold nanorods(AuNRs),herein,a colorimetric sensor array for discrimination of twelve ribonucleotides was developed based on the chemical etching of AuNRs with controllable aspect ratios.During the etching process,AuNRs were preferentially shortened and eventually turned into Au(Ⅲ) state by Fenton's reaction.The morphological change of AuNRs led to the significant color change and blue shift in the corresponding extinction spectrum.However,when Fe²⁺bound with ribonucleotides,the Fenton's reaction was prevented and the ability to etch AuNRs was weakened or disappeared.Due to the different structures of nucleotides,the binding ability of them with Fe²⁺ was distinct,resulting in the discrepancy in the chemical etching of AuNRs,which could be developed for distinguishing ribonucleotides.Moreover,the proposed sensor array was successfully explored to distinguish ribonucleotides in complex human urine samples.     

Multivariate statistical analysis of tobacco of different origin, grade and variety according to polyphenols and organic acids

The aim of this work was to determine the concentration of polyphenols, organic acids in tobacco of different areas, grades and varieties by ultra-performance liquid chromatography tandem mass spectrometry (UPLC/MS/MS) and to achieve statistical classification by principal component analysis (PCA) and linear discriminant analysis (LDA). The obtained results revealed that tobacco of different varieties can be correctly classified according to the contents of polyphenols or organic acid. The results of PCA showed that different grades and geographic regions cannot completely be discriminated using polyphenols or organic acid as independent variables. However, there were marked differences in special class from the same type or grade tobacco. At the same time, the results of LDA also showed that the samples were correctly classified at 100% for different varieties of tobacco, but only 55.3% and 60% for different grades and areas, respectively. These results demonstrated that the composition of polyphenols and organic acids can be used as the useful variables to characterize the type and the special class or grade of tobacco.     

Independent component analysis (ICA) algorithms for improved spectral deconvolution of overlapped signals in 1H NMR analysis: application to foods and related products

The major challenge facing NMR spectroscopic mixture analysis is the overlapping of signals and the arising impossibility to easily recover the structures for identification of the individual components and to integrate separated signals for quantification. In this paper, various independent component analysis (ICA) algorithms [mutual information least dependent component analysis (MILCA); stochastic non‐negative ICA (SNICA); joint approximate diagonalization of eigenmatrices (JADE); and robust, accurate, direct ICA algorithm (RADICAL)] as well as deconvolution methods [simple‐to‐use‐interactive self‐modeling mixture analysis (SIMPLISMA) and multivariate curve resolution‐alternating least squares (MCR‐ALS)] are applied for simultaneous ¹H NMR spectroscopic determination of organic substances in complex mixtures. Among others, we studied constituents of the following matrices: honey, soft drinks, and liquids used in electronic cigarettes. Good quality spectral resolution of up to eight‐component mixtures was achieved (correlation coefficients between resolved and experimental spectra were not less than 0.90). In general, the relative errors in the recovered concentrations were below 12%. SIMPLISMA and MILCA algorithms were found to be preferable for NMR spectra deconvolution and showed similar performance. The proposed method was used for analysis of authentic samples. The resolved ICA concentrations match well with the results of reference gas chromatography–mass spectrometry as well as the MCR‐ALS algorithm used for comparison. ICA deconvolution considerably improves the application range of direct NMR spectroscopy for analysis of complex mixtures. Copyright © 2014 John Wiley & Sons, Ltd.