The circular dichroism spectra of the β-cyclodextrin complex with azulene

When azulene is included in the cavity of β-cyclodextrin (β-CDx), induced circular dichroism (CD) bands are observed in the corresponding absorption bands of azulene. On the basis of the theoretical conclusions for β-CDx complexes with naphthalene derivatives of Harata and Uedaira, it is concluded from the signs of the CD bands that the first (about 455 to 715 nm), third (about 290 to 305 nm) and fifth (at about 238 nm) absorption bands have the transition dipole moments perpendicular to the long axis and the second 305 to 360 nm), fourth (about 240 to 290 nm) and sixth (shorter than 220 nm) absorption bands have the transition dipole moments parallel to the long axis of azulene. Our assignments are in complete agreement with earlier assignments. Our experimental results do not provide any information regarding two new electronic transitions suggested theoretically by Thulstrup et al.     

Electronic circular dichroism spectra from the complex polarization propagator

The complex linear polarization propagator approach has been applied to the calculation of electronic circular dichroism spectra of 3R-chloro-1-butyne, 3R-methylcyclopentanone, 3S-methylcyclohexanone, 4R-1,1-dimethyl-[3]-(1,2)ferrocenophan-2-on, S-3,3,3',3'-tetramethyl-1,1'-spirobi[3H,2,1]-benzoxaselenole, and the fullerene C84. Using time-dependent Kohn-Sham density functional theory, it is shown that a direct and efficient evaluation of the circular dichroism spectrum can be achieved. The approach allows for the determination of the circular dichroism at an arbitrary wavelength thereby, in a common formulation and implementation, covering the visible, ultraviolet, and x-ray regions of the spectrum. In contrast to traditional methods, the entire manifold of excited states is taken into account in the calculation of the circular dichroism at a given wavelength.     

Effects of complex formation on vibrational circular dichroism spectra

The determination of absolute configurations of chiral compounds using VCD is performed by comparing measured vibrational circular dichroism (VCD) spectra with calculated spectra. The process is based on two facts: the two enantiomers have rotational strengths of opposite sign, and the absolute configuration of the molecule used in the calculation is known. However, calculations on isolated molecules very often predict VCD intensities of very different magnitude or even different signs compared to the spectra measured in solution. Therefore, we have carefully analyzed what type of changes are induced by complexation of a solvent molecule to a solute. In the theoretical example of benzoyl-benzoic acid (in a particular chiral conformation) hydrogen bonded to the achiral NH3, we distinguish six cases, ranging from no or very small changes in the rotational strengths of solute modes (case A) to changes of sign of rotational strengths (case B), changes in magnitude (case C), nonzero rotational strengths for modes of the achiral solvent ("transfer of chirality", case D), large frequency shifts accompanied by giant enhancements of the IR and VCD intensities of modes involved in hydrogen bonding (case E), and emergence of new peaks (case F). In this work, all of these situations will be discussed and their origin will be elucidated. On the basis of our analysis, we advocate that codes for VCD rotational strength calculation should output for each mode i the angle xi(i) between the electric and magnetic transition dipole moments because only "robust modes" with xi far from 90 degrees should be used for the determination of the absolute configuration.     

Induced circular dichroism spectra of the cyclodextrin complexes with 2-Thioxo-1,3-benzodithiole and 2-Selenoxo-1,3-benzodithiole

The induced circular dichroism (ICD) spectra of -cyclodextrin (-CD) complexes with 2-thioxo-1,3-benzodithiole and 2-selenoxo-1,3-benzodithiole have been measured. From the signs of the ICD spectra of both complexes, the polarization directions for the excited states have been investigated.     

Microscopic measurement of circular dichroism spectra

A microscope device to measure the circular dichroism (CD) spectra of a specified microscopic region of chiral samples was constructed by combining of a couple of objective lenses and a CCD camera, which was installed in a sample chamber of a commercially available CD spectropolarimeter. By using this apparatus, high quality micro-CD spectra in the 60 x 60 microm region of samples could be measured. Micro-CD spectra of thin film of chiral DNA samples on glass and a natural kidney bean leaf were measured, and the potential of the micro-CD apparatus was successfully demonstrated.     

The absorption and circular dichroism spectra of chiral olefins

Absorption and CD spectra over the quartz and vacuum UV region down to 165 nm are reported for a range of chiral alkenes in the vapour phase and in solution from +70° to ?185°C. A major couplet of oppositely-signed CD bands with comparable band areas, near 48 and 55 kK, is observed in a number of dissymmetric olefins and in some cases a weaker Rydberg CD absorption is found at lower frequency. The Rydberg CD band is characterised by its sharp vibronic structure in the vapour phase and by large blue-shifts produced on passing to the condensed phase and by a reduction in temperature. The olefin couplet of major CD bands with opposite sign is assigned to a near-complete mixing of the electric-dipole π_x→π_x^* and the magnetic-dipole π_x→π_y^* excitations, producing a pair of isotiopic absorption bands with the same polarisation and comparable dipole strengths associated with the CD couplet. Three mixing mechanisms are discussed; sterically-induced π-bond torsion, a first-order static field model, and a second-order dynamic-coupling model dependent, respectively, upon the effective charge and upon the mean polarisability of dissymmetrically-located substituent. The latter two models give the octant rule previously proposed empirically connecting the sign of the rotational strength of the lower- and higher-frequency member of the olefin CD couplet with the position of the substituent in the chromophore coordinate frame.     

Magnetic circular dichroism spectra of 1,5-naphthyridine

The absorption and MCD spectra of 1,5-naphthyridine (1) are reported. The transition energies, oscillator strengths and Faraday B terms computed within the PPP SCF π MO Cl method are in reasonable agreement with experiment. The Faraday B terms of two bands in the middle wavenumber region [(30.0–45.0) × 10³ cm^?1] of 1 are larger than those in quinoline.     

First-principles calculations of magnetic circular dichroism spectra

An elaborate approach for the prediction of magnetic circular dichroism (MCD) spectra in the framework of highly correlated multiconfigurational ab initio methods is presented. The MCD transitions are computed by the explicit treatment of spin-orbit coupled (SOC) and spin-spin coupled (SSC) N-electron states. These states are obtained from the diagonalization of the SOC and SSC operators along with the spin and orbital Zeeman operators in the basis of a preselected number of roots of the spin-free Hamiltonian. Therefore, zero-field splittings due to the SOC and SSC interactions along with the magnetic field splittings are explicitly accounted for in the ground as well as the excited states. This makes it possible to calculate simultaneously all MCD A, B, and C terms even beyond the linear response limit. The SOC is computed using a multicenter mean-field approximation to the Breit-Pauli Hamiltonian. Two-electron SSC terms are included in the treatment without further approximations. The MCD transition intensities are subjected to numerical orientational averaging in order to treat the most commonly encountered case of randomly oriented molecules. The simulated MCD spectra for the OH, NH, and CH radicals as well as for [Fe(CN)(6)](3-) are in good agreement with the experimental spectra. In the former case, the significant effects of the inert gas matrices in which the experimental spectra were obtained were modeled in a phenomenological way.     

Interference effects in natural circular dichroism spectra

It is shown that Fano-type interference between a discrete (e.g. Rydberg) transition and a continuous (e.g. valence shell) transition can lead to natural circular dichroism line shapes which deviate significantly from simple superposition. The results are illustrated for a chiral molecule of C₂ symmetry.     

氨氯地平圆二色谱的理论解析

采用量子化学密度泛函理论(DFT)和含时密度泛函理论(TD-DFT)在B3LYP/6-311++G**水平上对氨氯地平分子的圆二色谱进行理论研究。计算结果表明:振动圆二色谱(VCD)的803、1113、1190、1238、1348、1509、1514、1736、2972、3022和3091 cm-1处存在吸收峰,产生以上吸收峰的振动均涉及到分子手性中心或者所处的基团与分子手性中心形成相关。研究还发现,甲醇溶液使电子圆二色谱(ECD)的吸收峰红移;甲醇溶液中,S-氨氯地平的ECD谱在207、366 nm处存在正性康登效应,223 nm处存在负性康登效应;以上吸收峰均来源于π-π*电子跃迁。这些结论对于深入理解氨氯地平的手征光学性质具有一定的指导意义。     

Magnetic circular dichroism studies 23. 1. Magnetic circular dichroism spectra of indole alkaloids

The magnetic circular dichroism spectra of a number of indole alkaloids show two B-terms of opposite sign in the 250–330 nm wavelength region associated with the ¹L_b and ¹L_a electronic transitions, the long wavelength, ¹L^b, band being of positive sign, whereas both bands strongly overlap in absorption. Various substituents in different positions of the indole ring cause a red shift of both bands and a broadening of the long wavelength B-term. The sign pattern, howver, remains unchanged in all examples thus far investigated. Dihydroindole and oxindole, on the other hand, exhibit MCD. bands with the opposite sign sequence as compared to the indole chromophore. This observation allows identification of the indole chromophore in alkaloids from the sign pattern of the MCD. bands.     

Magnetic circular dichroism spectrum of the triphenylene-iodine complex

The MCD CT bands of the triphenylene (9,10-benzphenanthrene) -I₂, triphenylene-TCNE and I₂-I₂ complexes are indicative of a structure of C_3v symmetry where the I₂ is located centrally and axially over the triphenylene ring.     

Magnetic circular dichroism spectra of triphenylene and coronene

The absorption spectra of triphenylene (I) and coronene (II) are assigned by using the MCD spectra and the results of the SCF screened potential π-MO CI calculations. The calculated Faraday A/D values for the ¹E and ¹E_1u excited states of I and II are in excellent agreement with the experimental values, in contrast to the calculated Faraday B value for the ¹E_1u state of II.     

Induced circular dichroism of cyclodextrin inclusion complexes: examining the cavity with a bilateral probe

The induced circular dichroism (ICD) of 1@7-Cy gives rise to an unusual spectrum which can be explained by a positive and a negative contribution of two identical chromophores. This finding is in agreement with rules predicting the ICD of chiral supramolecular systems.     

Charge-transfer transitions in the vacuum-ultraviolet of protein circular dichroism spectra

Circular dichroism (CD) is widely used in the structural characterization and secondary structure determination of proteins. The vacuum UV region (below 190 nm), where charge-transfer transitions have an influence on the CD spectra, can be accessed using synchrotron radiation circular dichroism (SRCD) spectroscopy. Recently, charge-transfer transitions in a conformationally diverse set of dipeptides have been characterized ab initio using complete active space self-consistent field calculations, and the relevant charge distributions have been parametrized for use in the matrix method for calculations of protein CD. Here, we present calculations of the vacuum UV CD spectra of 71 proteins, for which experimental SRCD spectra and X-ray crystal structures are available. The theoretical spectra are calculated considering charge-transfer and side chain transitions. This significantly improves the agreement with experiment, raising the Spearman correlation coefficient between the calculated and the experimental intensity at 175 nm from 0.12 to 0.79. The influence of the conformation on charge-transfer transitions is analyzed in detail, showing that the n --> pi* charge-transfer transitions are most important in alpha-helical proteins, whereas in beta strand proteins the pi --> pi* charge-transfer transition along the chain in the amino- to carboxy-end direction is most dominant.     

Complex polarization propagator calculations of magnetic circular dichroism spectra

It is demonstrated that the employment of the nonlinear complex polarization propagator enables the calculation of the complete magnetic circular dichroism spectra of closed-shell molecules, including at the same time both the so-called Faraday A and B terms. In this approach, the differential absorption of right and left circularly polarized light in the presence of a static magnetic field is determined from the real part of the magnetic field-perturbed electric dipole polarizability. The introduction of the finite lifetimes of the electronically excited states into the theory results in response functions that are well behaved in the entire spectral region, i.e., the divergencies that are found in conventional response theory approaches at the transition energies of the system are not present. The applicability of the approach is demonstrated by calculations of the ultraviolet magnetic circular dichroism spectra of para-benzoquinone, tetrachloro-para-benzoquinone, and cyclopropane. The present results are obtained with the complex polarization propagator approach in conjunction with Kohn-Sham density functional theory and the standard adiabatic density functionals B3LYP, CAM-B3LYP, and BHLYP.     

Induced circular dichroism and structural assignment of the cyclodextrin inclusion complexes of bicyclic azoalkanes

The stoichiometries and binding constants of the host-guest complexes between the bicyclic azoalkanes 1-6 and alpha-, beta-, and gamma-cyclodextrins (CDs) and the induced circular dichroism (ICD) of the complexes were analyzed. Assisted by proximity relationships obtained from 2D ROESY NMR spectra, the signs and intensities of the ICD spectra are interpreted in terms of the solution structures (co-conformations) of the CD complexes. The ICD assignments are based on the orientation-intensity ICD rules of Harata and Kodaka, which relate the ICD signs and intensities to the relative orientation of the electric dipole transition moment of the n,pi azo chromophore to the CD axis. The influence of the size of the guest and the host is discussed and the effect of introducing an additional chromophore (either a phenyl or a second azo group) on the ICD spectra is demonstrated.