Coordination‐Driven Folding and Assembly of a Short Peptide into a Protein‐like Two‐Nanometer‐Sized Channel

Short peptide helices have attracted attention as suitable building blocks for soft functional materials, but they are rarely seen in crystalline materials. A new artificial nanoassembly of short peptide helices in the crystalline state is presented in which peptide helices are arranged three‐dimensionally by metal coordination. The folding and assembly processes of a short peptide ligand containing the Gly‐Pro‐Pro sequence were induced by silver(I) coordination in aqueous alcohol, and gave rise to a single crystal composed of polyproline II helices. Crystallographic studies revealed that this material possesses two types of unique helical nanochannel; the larger channel measures more than 2 nm in diameter. Guest uptake properties were investigated by soaking the crystals in polar solutions of guest molecules; anions, organic chiral molecules, and bio‐oligomers are effectively encapsulated by this peptide‐folded porous crystal, with moderate to high chiral recognition for chiral molecules.     

Spontaneous chiral resolution of N,N′-diarylsquaramides: Formation of various types of one-handed helical networks during crystallization

N,N′-Bis(ortho-substituted phenyl)squaramides afforded chiral crystals, in which squaramide molecules are arranged in one-handed helical networks, upon simple recrystallization. Three types of crystals with different helices were obtained, depending on the substituents or recrystallization solvent. Folded-type intermolecular hydrogen-bonding interactions of squaramides play a key role in forming the helical networks.     

Crystallization of helical oligomers with chirality selection. I. A molecular dynamics simulation for bare helix

Helical polymers often exhibit pronounced chirality recognition during crystallization. By molecular dynamics simulation, we have already shown that the helical polymers crystallize with or without marked chirality selection depending on structural details of the polymer molecules. We have there classified the helical polymers into two categories: the bare helices made of only backbone atoms which show rather tolerant chirality selection, and the general helices with large side groups showing strict chirality recognition. Polymer crystallization is in general largely hampered and retarded by slow dynamics of the entangled chains, and therefore short helical oligomers are very suitable models for studying the chiral crystallization. We here report on molecular simulations of crystallization in the bare helical oligomer molecules by the use of Monte Carlo and molecular dynamics simulations. First we confirm the low temperature chiral crystal phase and the reversible order-disorder transition. We also observe frequent inversions of the helical sense, and the helix reversal defects propagating along the chains. Then we investigate crystallization from the melt into the chiral crystal phase. We find that the crystallization rate depends very sensitively on the degree of undercooling. The crystallization is found to be the first order transition that conforms well to the traditional picture of crystal growth in small molecules. Even when the crystallization directly into the chiral crystal phase is conducted, marked chirality selections are not observed at the early stage of crystallization; the chains adhere to the crystal surfaces selecting their helical senses rather at random resulting in racemic crystallites. The isothermal crystallization for a sufficiently long time, however, yields lamellar crystals composed of well-developed chiral domains, the growth of which seems to be accomplished through the transition back into the ordered chiral crystal phase.     

Molecular design and synthesis of artificial double helices

This account describes novel artificial double helices recently developed by our group. We have designed and synthesized the double helices consisting of two complementary, m-terphenyl-based strands that are intertwined through chiral amidinium-carboxylate salt bridges. Due to the chiral substituents on the amidine groups, the double helices adopted an excess one-handed helical conformation in solution as well as in the solid state. By extending the modular strategy, we have synthesized double helices bearing Pt(II) linkers, which underwent the double helix-to-double helix transformations through the chemical reactions of the Pt(II) complex moieties. In addition, artificial double-stranded metallosupramolecular helical polymers were constructed by combining the salt bridges and metal coordination. In contrast to the design-oriented double helices based on salt bridges, we have serendipitously developed a spiroborate-based double helicate bearing oligophenol strands. The optical resolution of the helicate was successfully attained by a diastereomeric salt formation. We have also unexpectedly found that oligoresorcinols consisting of a very simple repeating unit self-assemble into double helices with the aid of aromatic interactions in water. Furthermore, a bias in the twist sense of the double helices can be achieved by incorporating chiral substituents at both ends of the strands.     

A 3D chiral nanoporous coordination framework consisting of homochiral nanotubes assembled from octuple helices

A 3D chiral nanoporous coordination framework consisting of homochiral nanotubes assembled from octuple helices with a 19.4 A by 22.4 A aperture is formed by the parallel alignment of eight infinite helical chains.     

Chiral crystallization of helical polymers

Crystallization of achiral or racemic helical polymers in chiral crystals is quite frequent and while in some cases it may relate to the thermodynamic stability of the chiral polymorph, in others it must be associated with kinetic factors. Analysis of the available literature data suggests that in the second instance a key role must be played by the nucleation step, i.e. specifically by the formation of precrystalline entities. Furthermore a survey of the chiral crystal structures for helical polymers evidences that they are frequently characterized by a quasi-hexagonal packing. The hexagonality index H, defined as the ratio of the largest to the smallest distance between the axis of the reference helix and its six nearest neighbors, appears to be a reliable indicator of the presence of helices of a single handedness or, respectively, of both in a given crystal structure. A detailed analysis of the general energetic and entropic factors favouring chiral crystallization of helical polymers is carried out. It is shown that a hexagonal or pseudo-hexagonal arrangement (i.e. the six-fold coordination) in either the crystalline or in a precrystalline state, promotes chiral crystallization and is in its own turn favoured by clustering of isochiral helices.     

Stereospecific morphogenesis of aspartic acid helical crystals through molecular recognition

Helical morphologies were generated from aspartic acid (Asp) crystals in agar gel matrix. The morphogenesis stereospecifically proceeded in the helical crystal growth: D- and L-Asp provided left- and right-handed structures, respectively. The backbone of the helical morphology was twisted twins of tilted unit crystals, as was the case with inorganic helical crystals. The molecular recognition between the Asp crystals and agar matrix molecules resulted in the stereospecific morphogenesis. The chirality in Asp and agar molecules, the enantiomorph of unit crystals, and the resultant macroscopic helix were exquisitely associated with each other.     

Lyotropic Supramolecular Helical Columnar Phases Formed by C3‐Symmetric and Unsymmetric Rigid Molecules

Unlike thermotropic liquid‐crystalline C₃‐symmetric molecules with flexible chains, the herein‐designed fully rigid three‐armed molecules (C₃‐symmetric and unsymmetric) create a fancy architecture for the formation of lyotropic liquid crystals in water. First, hollow columns with triple‐stranded helices, analogous to helical rosette nanotubes, are spontaneously constructed by self‐organization of the rigid three‐armed molecules. Then, the helical nanotubes arrange into hexagonal liquid‐crystalline phases, which show macroscopic chirality as a result of supramolecular chiral symmetry breaking. Interestingly, the helical nanotubes constructed by the fully rigid molecules are robust and stable over a wide concentration range in water. They are hardly affected by ionic defects at the molecular periphery, that is, further decoration of functional groups on the molecular arms can presumably be realized without changing the helical conformation. In addition, the formed columnar phases can be aligned macroscopically by simple shear and show anisotropic ionic conductivity, which suggests promising applications for low‐dimensional ion‐conductive materials.     

圆偏振光在手性聚合物合成与结构调控中的应用

手性是自然界中普遍存在的有趣现象之一,在生命体中手性大分子特有的不对称结构在维持生命过程、新陈代谢和进化等面均起着决定性作用.受此启发,合成具有新型结构的光学活性聚合物,研究其独特的物理化学性质和功能已成为当今高分子领域研究的热点.左旋和右旋的圆偏振光已被广泛应用于氨基酸衍生物的不对称光合成、光分解和去消旋化反应,以及诱导含有偶氮苯或三苯胺等特定功能基团的超分子组装体或无机纳米粒子形成稳定螺旋结构.本文详细地介绍了圆偏振光辐照在手性聚合物合成与螺旋结构调控中的应用,初步揭示了圆偏振光的作用机制以及优势,归纳总结了已取得的研究进展,并对圆偏振光在手性聚合物合成与结构调控中的应用及发展进行了简单的评述和展望.     

Polyporous metal-coordination frameworks

Starting from a chiral building block--α-cyclodextrin--and rubidium salts, the crystallization of a complex of chiral helices, which constitute a "green" porous coordination polymer, has been realized. Cyclodextrin molecules coordinated by rubidium ions form porous, infinitely long left-handed helical channels, interdigitated with each other. A theoretical examination of the potential of this new material to act as a medium for chiral separation is presented.     

Chemistry and Structure of Diterpene Compounds of the Kaurane Series: VII. Chiral Complexes of Isosteviol with Aromatic Compounds

(4,8,13)-13-Methyl-16-oxo-17-norkaurane-18-carboxylic acid (isosteviol) forms with aniline, dimethylaniline, and toluene individual 2:1 molecular complexes whose crystals are isostructural. According to X-ray diffraction data, the supramolecular crystal structure of these complexes is formed by chiral double helices with a 4₃ screw axis, consisting of isosteviol molecules. The strands of the helices are linked together by intermolecular hydrogen bonds involving the carboxy and carbonyl groups of two isosteviol molecules of neighboring helices. In their turn, the two hydrogen-bonded isosteviol molecules form head-to-tail pseudocage dimers. The aromatic guests occupy fairly large cavities between the strands of isosteviol helices.     

Enantioselective Crystallization of Chiral Inorganic Crystals of ϵ-Zn(OH)2 with Amino Acids

Many inorganic materials can form crystals, but little is known about their enantioselective crystallization. Herein, we report on the enantioselective crystallization of ϵ-Zn(OH)₂ (Wulfingite) chiral crystals by using amino acids. Crystals of ϵ-Zn(OH)₂ were crystallized from supersaturated sodium hydroxide and zinc nitrate aqueous solutions in the presence of l - or d -arginine. All of the chiral measurements, such as selective chiral adsorption by circular dichroism (CD), chiral chromatography, and polarimetry measurements, clearly show chiral discrimination during the crystallization of ϵ-Zn(OH)₂. In addition, a new method has been developed for identifying chirality in crystals by using electron paramagnetic resonance (EPR). Although the values of chiral induction of the ϵ-Zn(OH)₂ crystals obtained are somewhat low, these values are still significant because they demonstrate that enantioselectivity during the crystallization of chiral inorganic crystals with chiral additives can be achieved. The method can be applied to many chiral inorganic systems. Understanding and controlling the crystallization of chiral inorganic crystals is important for gaining knowledge on the interaction of chiral molecules with inorganic surfaces. This knowledge can lead to an understanding of basic scientific questions such as the evolution of homochirality in biomolecules and the development of chiral inorganic crystals for a variety of purposes such as asymmetric catalysis and optical applications.     

Chiral induction in quinoline-derived oligoamide foldamers: assignment of helical handedness and role of steric effects

Chiral groups attached to the end of quinoline-derived oligoamide foldamers give rise to chiral helical induction in solution. Using various chiral groups, diastereomeric excesses ranging from 9% to 83% could be measured by NMR and circular dichroism. Despite these relatively weak values and the fact that diastereomeric helices coexist and interconvert in solution, the right-handed or left-handed helical sense favored by the terminal chiral group could be determined unambiguously using X-ray crystallography. Assignment of chiral induction was performed in an original way using the strong tendency of racemates to cocrystallize, and taking advantage of slow helix inversion rates, which allowed one to establish that the stereomers observed in the crystals do correspond to the major stereomers in solution. The sense of chiral helical induction was rationalized on the basis of sterics. Upon assigning an Rs or Ss chirality to the stereogenic center using a nomenclature where the four substituents are ranked according to decreasing sizes, it is observed that Rs chirality always favors left-handed helicity and Ss chirality favors right-handed helicity (P). X-ray structures shed some light on the role of sterics in the mechanism of chiral induction. The preferred conformation at the stereocenter is apparently one where the bulkiest group should preferentially point away from the helix, the second largest group should be aligned with the helix backbone, and the smallest should point to the helix.     

Homochiral coordination polymer with infinite double-stranded helices

Hydrothermal reaction of 4,4-trimethylenedipyridine (tmdp) with ZnI2 under 175 degrees C yields a novel compound, {[Zn2I4(tmdp)2]n.[Zn2I4(tmdp)2]n}, which has a chiral infinite double-stranded helical structure consisting of two single-stranded helices of the same handedness.     

用AFM研究DL-缬氨酸晶体的结构及其表面分子的排列

利用原子力显微镜(AFM)成像技术来观察DL-缬氨酸晶体表面分子的规则排列, 研究表明对映体分子在DL-缬氨酸晶体中相互配对排列, 每个晶胞单元中包含两个对映体分子, 属于具有中心对称结构 群, 整个晶体是消旋的. 通过原子力显微镜对DL-缬氨酸晶体表面重复单元的测量结果与X衍射数据对比, 发现用AFM观察到的DL-缬氨酸晶体中分子表面形貌的规整排列的距离, 同X衍射得出的三斜晶系晶胞参数数据基本一致, 由此判定该晶体属于三斜晶系而不是单斜晶系. 探讨了利用纳米技术的研究手段在分子水平研究生命起源中的手性问题, 在确定的晶面上通过分子周期性结构排列规律, 对DL-缬氨酸晶体表面分子进行手性识别.     

Enantioselective Synthesis of a Chiral Coordination Polymer with Circularly Polarized Visible Laser

Circular dichroism is known to be the feature of a chiral agent which has inspired scientist to study the interesting phenomena of circularly polarized light (CPL) modulated molecular chirality. Although several organic molecules or assemblies have been found to be CPL‐responsive, the influence of CPL on the assembly of chiral coordination compounds remains unknown. Herein, a chiral coordination polymer, which is constructed from achiral agents, was used to study the CPL‐induced enantioselective synthesis. By irradiation with either left‐handed or right‐handed CPL during the reaction and crystallization, enantiomeric excesses of the crystalline product were obtained. Left‐handed CPL resulted in crystals with a left‐handed helical structure, and right‐handed CPL led to crystals with a right‐handed helical structure. It is exciting that the absolute asymmetric synthesis of a chiral coordination polymer could be enantioselective when using CPL, and provides a strategy for the control of the chirality of chiral coordination polymers.     

超分子作用构筑具有高光学不对称性的表面等离子纳米粒子手性组装体

《Science》杂志最近刊发了吉林大学刘堃团队关于手性纳米材料研究的重要进展: 通过超分子作用诱导金纳米棒与人胰岛淀粉样多肽之间共组装, 构筑具有类似于手性液晶结构的纳米螺旋超结构. 与单独的金纳米棒相比, 长程有序的纳米螺旋结构的手性各向异性因子(g-factor)提高了4600倍, 高达0.12. 该工作在液晶与手性无机纳米结构间建立了联系, 为构筑有机-无机光学活性结构提供了统一的设计原则, 并为淀粉样类疾病药物在复杂生物介质中的筛选开发了新方法.     

The Helix to Super‐Helix Transition in the Self‐Assembly of π‐Systems: Superseding of Molecular Chirality at Hierarchical Level

Higher‐order super‐helical structures derived from biological molecules are known to evolve through opposite coiling of the initial helical fibers, as seen in collagen protein. A similar phenomenon is observed in a π‐system self‐assembly of chiral oligo(phenyleneethylene) derivatives (S )‐ 1 and (R )‐ 1 that explains the unequal formation of both left‐ and right‐handed helices from molecule having a specific chiral center. Concentration‐ and temperature‐dependent circular dichroism (CD) and UV/Vis spectroscopic studies revealed that the initial formation of helical aggregates is in accordance with the molecular chirality. At the next level of hierarchical self‐assembly, coiling of the fibers occurs with opposite handedness, thereby superseding the command of the molecular chirality. This was confirmed by solvent‐dependent decoiling of super‐helical structures and concentration‐dependent morphological analysis.     

A Disulfide Switch Providing Absolute Handedness Control in Double Helices via Conversion from the Antiparallel to Parallel Helical Pattern

A strategy to reversibly switch the parallel/antiparallel helical conformation of aromatic double helices through the formation/breakage of a disulfide bond is presented. Single-crystal X-ray structures, NMR, and circular dichroism spectroscopy demonstrate that the double helices with terminal thiol groups favor an antiparallel helical arrangement both in the solid state and in solution, while the P/M bias of helicity induced by chiral segments from another extremity of the sequence is weak in this structural motif. The antiparallel helices can be rearranged to parallel helices through the disulfide connection of the sequences. This change enhances the bias of helical handedness and results in absolute chirality control of the double helices. The handedness-mediated process can be governed by the oxidation-reduction cycle, thereby switching the structural arrangement and the enhancement of chiral bias. In addition, we find that the sequences can dimerize into an intermolecular double helix with the disulfide connection. And the helical handedness is also fully controlled due to the head-to-head structural motif.     

Novel Ligands Incorporating Phosphinoxide Groups as Particularly Efficient Sensitizers for Lanthanide Emission

Helical molecular assemblies of bile acids and their derivatives were systematically investigated. These molecules have a common asymmetric structure with three different directions, and form characteristic inclusion crystals with the following hierarchical structure. First, such molecules arrange along their helical axes to yield the helical tapes with a definite direction. Second, the helical tapes are combined in a parallel fashion by using their side-chains through hydrogen bonds to produce chiral sheets. Third, the sheets stack together through van der Waals forces in a parallel or antiparallel fashion. Fourth, there exist chiral spaces for including guests among their sheets. Such hierarchical structure enables us to explain a role of the side-chains with different hydrogen bonding groups and length.