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1.
Nitric oxide (NO) is frequently used to probe the substrate-binding site of "spectroscopically silent" non-heme Fe(2+) sites of metalloenzymes, such as superoxide reductase (SOR). Herein we use NO to probe the superoxide binding site of our thiolate-ligated biomimetic SOR model [Fe(II)(S(Me(2))N(4)(tren))](+) (1). Like NO-bound trans-cysteinate-ligated SOR (SOR-NO), the rhombic S = 3/2 EPR signal of NO-bound cis-thiolate-ligated [Fe(S(Me(2))N(4)(tren)(NO)](+) (2; g = 4.44, 3.54, 1.97), the isotopically sensitive ν(NO)(ν((15)NO)) stretching frequency (1685(1640) cm(-1)), and the 0.05 ? decrease in Fe-S bond length are shown to be consistent with the oxidative addition of NO to Fe(II) to afford an Fe(III)-NO(-) {FeNO}(7) species containing high-spin (S = 5/2) Fe(III) antiferromagnetically coupled to NO(-) (S = 1). The cis versus trans positioning of the thiolate does not appear to influence these properties. Although it has yet to be crystallographically characterized, SOR-NO is presumed to possess a bent Fe-NO similar to that of 2 (Fe-N-O = 151.7(4)°). The N-O bond is shown to be more activated in 2 relative to N- and O-ligated {FeNO}(7) complexes, and this is attributed to the electron-donating properties of the thiolate ligand. Hydrogen-bonding to the cysteinate sulfur attenuates N-O bond activation in SOR, as shown by its higher ν(NO) frequency (1721 cm(-1)). In contrast, the ν(O-O) frequency of the SOR peroxo intermediate and its analogues is not affected by H-bonds to the cysteinate sulfur or other factors influencing the Fe-SR bond strength; these only influence the ν(Fe-O) frequency. Reactions between 1 and NO(2)(-) are shown to result in the proton-dependent heterolytic cleavage of an N-O bond. The mechanism of this reaction is proposed to involve both Fe(II)-NO(2)(-) and {FeNO}(6) intermediates similar to those implicated in the mechanism of NiR-promoted NO(2)(-) reduction.  相似文献   

2.
Recent years have seen dramatic growth in our understanding of the biological roles of nitric oxide (NO). Yet, the fundamental underpinnings of its reactivities with transition metal centers in proteins and enzymes, the stabilities of their structures, and the relationships between structure and reactivity remains, to a significant extent, elusive. This is especially true for the so-called ferric heme nitrosyls ([FeNO](6) in the Enemark-Feltham scheme). The Fe-CO and C-O bond strengths in the isoelectronic ferrous carbonyl complexes are widely recognized to be inversely correlated and sensitive to structural, environmental, and electronic factors. On the other hand, the Fe-NO and N-O bonds in [FeNO](6) heme complexes exhibit seemingly inconsistent behavior in response to varying structure and environment. This report contains resonance Raman and density functional theory results that suggest a new model for FeNO bonding in five-coordinate [FeNO](6) complexes. On the basis of resonance Raman and FTIR data, a direct correlation between the nu(Fe)(-)(NO) and nu(N)(-)(O) frequencies of [Fe(OEP)NO](ClO(4)) and [Fe(OEP)NO](ClO(4)).CHCl(3) (two crystal forms of the same complex) has been established. Density functional theory calculations show that the relationship between Fe-NO and N-O bond strengths is responsive to FeNO electron density in three molecular orbitals. The highest energy orbital of the three is sigma-antibonding with respect to the entire FeNO unit. The other two comprise a lower-energy, degenerate, or nearly degenerate pair that is pi-bonding with respect to Fe-NO and pi-antibonding with respect to N-O. The relative sensitivities of the electron density distributions in these orbitals are shown to be consistent with all published indicators of Fe-N-O bond strengths and angles, including the examples reported here.  相似文献   

3.
The tetraheme cytochrome c(554) (cyt c(554)) from Nitrosomonas europaea is believed to function as an electron-transfer protein from hydroxylamine oxidoreductase (HAO). We show here that cyt c(554) also has significant NO reductase activity. The protein contains one high-spin and three low-spin c-type hemes. HAO catalyzed reduction of the cyt c(554), ligand binding, intermolecular electron transfer, and kinetics of NO reduction by cyt c(554) have been investigated. We detect the formation of a NO-bound ferrous heme species in cyt c(554) by EPR and M?ssbauer spectroscopies during the HAO catalyzed oxidation of hydroxylamine, indicating that N-oxide intermediates produced from HAO readily bind to cyt c(554). In the half-reduced state of cyt c(554), we detect a spin interaction between the [FeNO](7) state of heme 2 and the low-spin ferric state of heme 4. We find that ferrous cyt c(554) will reduce NO at a rate greater than 16 s(-1), which is comparable to rates of other known NO reductases. Carbon monoxide or nitrite are shown not to bind to the reduced protein, and previous results indicate the reactions with O(2) are slow and that a variety of ligands will not bind in the oxidized state. Thus, the enzymatic site is highly selective for NO. The NO reductase activity of cyt c(554) may be important during ammonia oxidation in N. europaea at low oxygen concentrations to detoxify NO produced by reduction of nitrite or incomplete oxidation of hydroxylamine.  相似文献   

4.
The electrophilic reactivity of the pentacyanonitrosylferrate(II) ion, [Fe(CN)(5)NO](2)(-), toward hydrazine (Hz) and substituted hydrazines (MeHz, 1,1-Me(2)Hz, and 1,2-Me(2)Hz) has been studied by means of stoichiometric and kinetic experiments (pH 6-10). The reaction of Hz led to N(2)O and NH(3), with similar paths for MeHz and 1,1-Me(2)Hz, which form the corresponding amines. A parallel path has been found for MeHz, leading to N(2)O, N(2), and MeOH. The reaction of 1,2-Me(2)Hz follows a different route, characterized by azomethane formation (MeNNMe), full reduction of nitrosyl to NH(3), and intermediate detection of [Fe(CN)(5)NO](3)(-). In the above reactions, [Fe(CN)(5)H(2)O](3)(-) was always a product, allowing the system to proceed catalytically for nitrite reduction, an issue relevant in relation to the behavior of the nitrite and nitric oxide reductase enzymes. The mechanism comprises initial reversible adduct formation through the binding of the nucleophile to the N-atom of nitrosyl. The adducts decompose through OH(-) attack giving the final products, without intermediate detection. Rate constants for the adduct-formation steps (k = 0.43 M(-)(1) s(-)(1), 25 degrees C for Hz) decrease with methylation by about an order of magnitude. Among the different systems studied, one-, two-, and multielectron reductions of bound NO(+) are analyzed comparatively, with consideration of the role of NO, HNO (nitroxyl), and hydroxylamine as bound intermediates. A DFT study (B3LYP) of the reaction profile allows one to characterize intermediates in the potential hypersurface. These are the initial adducts, as well as their decomposition products, the eta(1)- and eta(2)-linkage isomers of N(2)O.  相似文献   

5.
The mechanism of nitrite reduction at the Cu(II) center of both copper nitrite reductase and a number of corresponding synthetic models has been investigated by using both QM/MM and cluster calculations employing density functional theory methods. The mechanism in both cases is found to be very similar. Initially nitrite is bound in a bidentate fashion to the Cu(II) center via the two oxygen atoms. Upon reduction of the copper center, the two possible coordination modes of the protonated nitrite, by either nitrogen or a single oxygen atom, are close in energy, with nitrogen coordination probably preferred. Further protonation of this species leads to N-O bond cleavage, and an electron transfer from the Cu(I) center to the N-O+ ligand, resulting in loss of NO and regeneration of the resting state of the enzyme having a bound water molecule.  相似文献   

6.
Previous investigations of nitrite and nitric oxide reduction by myoglobin in surfactant film modified electrodes characterized several distinct steps in the denitrification pathway, including isolation of a nitroxyl adduct similar to that proposed in the P450nor catalytic cycle. To investigate the effect of the axial ligand on these biomimetic reductions, we report here a comparison of the electrocatalytic activity of myoglobin (Mb) with a thermophilic cytochrome P450 CYP119. Electrocatalytic nitrite reduction by CYP119 is very similar to that by Mb: two catalytic waves at analogous potentials are observed, the first corresponding to the reduction of nitric oxide, the second to the production of ammonia. CYP119 is a much more selective catalyst, giving almost exclusively ammonia during the initial half-hour of reductive electrolysis of nitrite. More careful investigations of specific steps in the catalytic cycle show comparable rates of nitrite dehydration and almost identical potentials and lifetimes for ferrous nitroxyl intermediate (Fe(II)-NO(-)) in CYP119 and Mb. The catalytic efficiency of nitric oxide reduction is reduced for CYP119 as compared to Mb, attributable to both a lower affinity of the protein for NO and a decreased rate of N-N coupling. Isotopic labeling studies show ammonia incorporation into nitrous oxide produced during nitrite reduction, as has been termed co-denitrification for certain bacterial and fungal nitrite reductases. Mb has a much higher co-denitrification activity than CYP119. Conversely, CYP119 is shown to be slightly more efficient at the two-electron reduction of N(2)O to N(2). These results suggest that thiolate ligation does not significantly alter the catalytic reactivity, but the dramatic difference in product distribution may suggest an important role for protein stability in the selectivity of biocatalysts.  相似文献   

7.
In a previous study, we analyzed the electronic structure of S = 3/2 [FeNO](7) model complexes [Brown et al. J. Am. Chem. Soc. 1995, 117, 715-732]. The combined spectroscopic data and SCF-X alpha-SW electronic structure calculations are best described in terms of Fe(III) (S = 5/2) antiferromagnetically coupled to NO(-) (S = 1). Many nitrosyl derivatives of non-heme iron enzymes have spectroscopic properties similar to those of these model complexes. These NO derivatives can serve as stable analogues of highly labile oxygen intermediates. It is thus essential to establish a reliable density functional theory (DFT) methodology for the geometry and energetics of [FeNO](7) complexes, based on detailed experimental data. This methodology can then be extended to the study of [FeO(2)](8) complexes, followed by investigations into the reaction mechanisms of non-heme iron enzymes. Here, we have used the model complex Fe(Me(3)TACN)(NO)(N(3))(2) as an experimental marker and determined that a pure density functional BP86 with 10% hybrid character and a mixed triple-zeta/double-zeta basis set lead to agreement between experimental and computational data. This methodology is then applied to optimize the hypothetical Fe(Me(3)TACN)(O(2))(N(3))(2) complex, where the NO moiety is replaced by O(2). The main geometric differences are an elongated Fe[bond]O(2) and a steeper Fe[bond]O[bond]O angle in the [FeO(2)](8) complex. The electronic structure of [FeO(2)](8) corresponds to Fe(III) (S = 5/2) antiferromagnetically coupled to O(2)(-) (S = 1/2), and, consistent with the extended bond length, the [FeO(2)](8) unit has only one Fe(III)-O(2)(-) bonding interaction, while the [FeNO](7) unit has both sigma and pi type Fe(III)-NO(-) bonds. This is in agreement with experiment as NO forms a more stable Fe(III)-NO(-) adduct relative to O(2)(-). Although NO is, in fact, harder to reduce, the resultant NO(-) species forms a more stable bond to Fe(III) relative to O(2)(-) due to the different bonding interactions.  相似文献   

8.
The reactions of sodium nitrite with sodium dithionite and sulfoxylate ion were studied in the presence of iron(III) tetrasulfophthalocyanine, Fe(III)(TSPc)3-, in aqueous alkaline solution. Kinetic parameters for the different reaction steps in the catalytic reduction by dithionite were determined. The final product of the reaction was found to be nitrous oxide. Contrary to this, the product of the catalytic reduction of nitrite by sulfoxylate was found to be ammonia. The striking difference in the reaction products is accounted for in terms of different structures of the intermediate complexes formed during the reduction by dithionite and sulfoxylate, in which nitrite is suggested to coordinate to the iron complex via nitrogen and oxygen, respectively. Sulfoxylate is shown to be a convenient reductant for the synthesis of the highly reduced iron phthalocyanine species Fe(I)(TSPc*)6- in aqueous solution. The kinetics of the reduction of Fe(I)(TSPc)5- to Fe(I)(TSPc*)6-, as well as the oxidation of the latter species by nitrite, was studied in detail.  相似文献   

9.
Molybdenum complexes that contain the triamidoamine ligand [(RNCH(2)CH(2))(3)N](3-) (R = 3,5-(2,4,6-iPr(3)C(6)H(2))(2)C(6)H(3)) catalyze the reduction of dinitrogen to ammonia at 22 degrees C and 1 atm with protons from 2,6-dimethylpyridinium and electrons from decamethylchromocene. Several theoretical studies have been published that bear on the proposed intermediates in the catalytic dinitrogen reduction reaction and their reaction characteristics, including DFT calculations on [(HIPTNCH(2)CH(2))(3)N]Mo species (HIPT =hexaisopropylterphenyl = 3,5-(2,4,6-iPr(3)C(6)H(2))(2)C(6)H(3)), which contain the actual triamidoamine ligand that is present in catalytic intermediates. Recent theoretical findings are compared with experimental findings for each proposed step in the catalytic reaction.  相似文献   

10.
We use quantitative experimental and theoretical approaches to characterize the vibrational dynamics of the Fe atom in porphyrins designed to model heme protein active sites. Nuclear resonance vibrational spectroscopy (NRVS) yields frequencies, amplitudes, and directions for 57Fe vibrations in a series of ferrous nitrosyl porphyrins, which provide a benchmark for evaluation of quantum chemical vibrational calculations. Detailed normal mode predictions result from DFT calculations on ferrous nitrosyl tetraphenylporphyrin Fe(TPP)(NO), its cation [Fe(TPP)(NO)]+, and ferrous nitrosyl porphine Fe(P)(NO). Differing functionals lead to significant variability in the predicted Fe-NO bond length and frequency for Fe(TPP)(NO). Otherwise, quantitative comparison of calculated and measured Fe dynamics on an absolute scale reveals good overall agreement, suggesting that DFT calculations provide a reliable guide to the character of observed Fe vibrational modes. These include a series of modes involving Fe motion in the plane of the porphyrin, which are rarely identified using infrared and Raman spectroscopies. The NO binding geometry breaks the four-fold symmetry of the Fe environment, and the resulting frequency splittings of the in-plane modes predicted for Fe(TPP)(NO) agree with observations. In contrast to expectations of a simple three-body model, mode energy remains localized on the FeNO fragment for only two modes, an N-O stretch and a mode with mixed Fe-NO stretch and FeNO bend character. Bending of the FeNO unit also contributes to several of the in-plane modes, but no primary FeNO bending mode is identified for Fe(TPP)(NO). Vibrations associated with hindered rotation of the NO and heme doming are predicted at low frequencies, where Fe motion perpendicular to the heme is identified experimentally at 73 and 128 cm-1. Identification of the latter two modes is a crucial first step toward quantifying the reactive energetics of Fe porphyrins and heme proteins.  相似文献   

11.
The reaction of sodium nitrite with sodium dithionite was studied in the presence of cobalt(II) tetrasulfophthalocyanine, COII(TSPc)4-, in aqueous alkaline solution. The overall mechanism comprises the reduction of CoII(TSPc)4- by dithionite, followed by the formation of an intermediate complex between COI(TSPc)5- and nitrite, which undergoes two parallel subsequent reactions with and without nitrite as a reagent. Kinetic parameters for the different reaction steps of the catalytic process were determined. The final product of the reaction was found to be ammonia. Contrary to those found for the catalytic reduction of nitrite, the products of the catalytic reduction of nitrate were found to be dinitrogen and nitrous oxide. The possible catalytic reduction of nitrous oxide was confirmed by independent experiments. The striking differences in the reduction products of nitrite and nitrate are explained in terms of different structures of the intermediate complex between CoI(TSPc)5- and substrate, in which nitrite and nitrate are suggested to coordinate via nitrogen and oxygen, respectively.  相似文献   

12.
A tandem one-pot reaction of an aldehyde with a primary amine involving condensation and then cyclization (N-alkylation), followed by intramolecular dipolar cycloaddition of the resulting nitrone or azomethine ylide, provides a synthesis of bridged tricyclic amines. The reaction was most successful using hydroxylamine, and when the dipolarophile was an unsaturated ester, subsequent reduction of the N-O bond and cyclization to the lactam provided the core ring system of the yuzurimine, daphnilactone B, and bukittinggine type Daphniphyllum alkaloids.  相似文献   

13.
Cobalt octasulfophenyltetrapyrazinoporphyrazine was shown to be an effective catalyst of nitrite reduction by thiourea dioxide. The intermediate product of nitrite reduction was nitrogen(II) oxide, and the final product was ammonia. The kinetic and activation parameters of catalytic process stages were determined.  相似文献   

14.
It is shown that the first step in the reduction of the investigated oxadiazoles on a dropping mercury cathode in dimethylformamide corresponds to two-electron cleavage of the N-O bond. The degree of reduction is determined by the nature and position of the substituents in the oxadiazole ring and by the rate of protonation of the intermediately formed particles.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 1, pp. 38–40, January, 1979.  相似文献   

15.
Activation of O(2) by heme-containing monooxygenases generally commences with the common initial steps of reduction to the ferrous heme and binding of O(2) followed by a one-electron reduction of the O(2)-bound heme. Subsequent steps that generate reactive oxygen intermediates diverge and reflect the effects of protein control on the reaction pathway. In this study, M?ssbauer and EPR spectroscopies were used to characterize the electronic states and reaction pathways of reactive oxygen intermediates generated by 77 K radiolytic cryoreduction and subsequent annealing of oxy-heme oxygenase (HO) and oxy-myoglobin (Mb). The results confirm that one-electron reduction of (Fe(II)-O(2))HO is accompanied by protonation of the bound O(2) to generate a low-spin (Fe(III)-O(2)H(-))HO that undergoes self-hydroxylation to form the alpha-meso-hydroxyhemin-HO product. In contrast, one-electron reduction of (Fe(II)-O(2))Mb yields a low-spin (Fe(III)-O(2)(2-))Mb. Protonation of this intermediate generates (Fe(III)-O(2)H(-))Mb, which then decays to a ferryl complex, (Fe(IV)=O(2-))Mb, that exhibits magnetic properties characteristic of the compound II species generated in the reactions of peroxide with heme peroxidases and with Mb. Generation of reactive high-valent states with ferryl species via hydroperoxo intermediates is believed to be the key oxygen-activation steps involved in the catalytic cycles of P450-type monooxygenases. The M?ssbauer data presented here provide direct spectroscopic evidence supporting the idea that ferric-hydroperoxo hemes are indeed the precursors of the reactive ferryl intermediates. The fact that a ferryl intermediate does not accumulate in HO underscores the determining role played by protein structure in controlling the reactivity of reaction intermediates.  相似文献   

16.
Biological nitrogen fixation has been investigated beginning with the monoprotonated dinitrogen bound to the FeMo cofactor of nitrogenase up to the formation of the two ammonia molecules. The energy differences of the relevant intermediates, the reaction barriers, and potentially relevant side branches are presented. During the catalytic conversion, nitrogen bridges two Fe atoms of the central cage, replacing a sulfur bridge present before dinitrogen binds to the cofactor. A transformation from cis- to trans-diazene has been found. The strongly exothermic cleavage of the dinitrogen bond takes place, while the Fe atoms are bridged by a single nitrogen atom. The dissociation of the second ammonia from the cofactor is facilitated by the closing of the sulfur bridge following an intramolecular proton transfer. This closes the catalytic cycle.  相似文献   

17.
The mechanism of electrocatalytic reduction of nitric oxide on Pt(100)-(1 x 1) in acidic media has been studied using voltammetry, in-situ infrared spectroscopy, and on-line mass spectroscopy, considering the effect of surface defects, NO coverage, and the nature of the supporting electrolyte (sulfate vs perchlorate). Related mechanistic aspects of hydroxylamine (HAM) transformations on the same surface have been also examined. The adsorption of nitric oxide on Pt(100) results in the formation of an adlayer with a structure similar to that formed under ultrahigh vacuum (UHV) conditions. Ammonia was shown to be the main product of NOads reduction on Pt(100). The saturation coverage of NO adsorbate on Pt(100) was found to be around 0.5 ML, in agreement with previous UHV and electrochemical studies. Two features observed in the voltammetric profile for the electrocatalytic reduction of saturated and subsaturated NO adlayers were tentatively ascribed to reactions of NO species having different reactivity. The Tafel slope analysis of these voltammetric features gives values of ca. 60 mV decade(-1). This value was interpreted in terms of an EC mechanism, in which the first electron/proton transfer is at equilibrium, resulted in formation of HNOads intermediate, while the second reaction step is a chemical rate-determining step. This chemical step is assumed to involve the N-O bond breaking in HNOads intermediate, which most probably requires a free neighboring site. From a comparison with NOads reduction on Pt(111) and Pt(110), it follows that (i) the reaction mechanism is structure sensitive and (ii) Pt(100) is the most active surface for breaking the N-O bond, which is in agreement with the trend observed under UHV conditions. As suggested in our previous studies, the electrocatalytic reduction of HAM is likely to proceed through its partial dehydrogenation. In this study, we further develop this idea, and, based on the mechanism for NOads reduction proposed here, we suggest HNOads to be the intermediate appearing both in HAM reduction/oxidation and in NOads reduction.  相似文献   

18.
The electron-transfer reaction between bis(cyclopentadienyl)iron(II) ([Fe(II)(C5H5)2]) in nitrobenzene and a hexacyanoferrate redox couple ([Fe(II/III)(CN)6](4-/3-)) in water at the nitrobenzene / water interface was studied using normal pulse voltammetry. The voltammetric results indicate that the electron-transfer reaction takes place by way of a so-called ion-transfer (IT) mechanism, of which the forward and backward rate constants of the homogeneous electron-transfer reaction between [Fe(II/III)(C5H5)2](0/+) and [Fe(II/III)(CN)6](4-/3-) in the water phase have been determined. The electron-transfer reaction between [Fe(II)(C5H5)2] in 1,2-dichloroethane and [Fe(II/III)(CN)6](4-/3-) in water at the 1,2-dichloroethane / water interface was shown to also take place by the IT-mechanism.  相似文献   

19.
The transition metal rhodium has been proved the effective catalyst to convert from NO(x) to N(2.) In the present work, we are mainly focused on the NO adsorption and decomposition reaction mechanism on the surface of the Rh(7)(+) cluster, and the calculated results suggest that the reaction can proceed via three steps. First, the NO can adsorb on the surface of the Rh(7)(+) cluster; second, the NO decomposes to N and O atoms; finally, the N atom reacts with the second adsorbed NO and reduces to a N(2) molecule. The N-O bond breaks to yield N and O atoms in the second step, which is the rate-limiting step of the whole catalytic cycle. This step goes over a relatively high barrier (TS(12)) of 39.6 kcal/mol and is strongly driven by a large exothermicity of 55.1 kcal/mol during the formation of stable compound 3, accompanied by the N and O atoms dispersed on the different Rh atoms of the Rh(7)(+) cluster. In addition, the last step is very complex due to the different possibilities of reaction mechanism. On the basis of the calculations, in contrast to the reaction path II that generates N(2) from two nitrogen atoms coupling, the reaction path I for the formation of intermediate N(2)O is found to be energetically more favorable. Present work would provide some valuable fundamental insights into the behavior of the nitric oxide adsorption and reduction reaction mechanism on the Rh(7)(+) cluster.  相似文献   

20.
Reaction pathways for the one- and two-electron reductions of [Fe(CN)(5)NO](2)(-) have been investigated by means of a density functional theory (DFT) approach combined with the polarized continuum model (PCM) of solvation. In addition, UV-vis spectroscopic data were obtained using ZINDO/S calculations including a point-charge model simulation of solvent effects. DFT methodologies have been used to assess the thermodynamical feasibility of protonation and cyanide-release processes for the reduced species. We conclude that [Fe(CN)(5)NO](3)(-) is a stable species in aqueous solution but may release cyanide yielding [Fe(CN)(4)NO](2)(-), consistent with experimental results. On the other hand, the [Fe(CN)(5)NO](4)(-) complex turns out to be unstable in solution, yielding the product of cyanide release, [Fe(CN)(4)NO](3)(-), and/or the protonated HNO complex. All the structural and spectroscopic (IR, UV-vis) predictions for the [Fe(CN)(5)HNO](3)(-) ion are consistent with the scarce but significant experimental evidence of its presence as an intermediate in nitrogen redox interconversion chemistry. Our computed data support an Fe(II)(LS) + NO(+) assignment for [Fe(CN)(5)NO](2)(-), an Fe(II)(LS) + NO assignment for the one-electron reduction product, but an Fe(I)(LS) + NO(+) for the one-electron product after dissociation of an axial cianide, and an Fe(II) + singlet NO(-) for the two-electron reduction species.  相似文献   

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