Determination of Organic Compounds in Solid and Gas Phases Using Miniaturized Axially Symmetric Time-of-Flight Mass Reflectrons

Original axially symmetric time-of-flight mass reflectrons for studying organic compounds in solid and gas phases were described. In the solid phase, organic molecules were ionized by an ultraviolet laser beam generated in accordance with the matrix-assistant laser desorption and ionization (MALDI) procedure. Gas-phase molecules were ionized by an electron impact. Mass spectra of organic compounds recorded in laboratory are presented. It was shown that the instruments proposed combine small dimensions with high analytical performance. Various modifications of these instruments developed at the Institute of Cosmic Research, Russian Academy of Sciences, can find wide application for solving some analytical problems on the Earth and in outer space.     

Chromatographic behaviour of naproxen-cyclodextrin complexes stationary phase C8 alkyl chain as competitor for the drug release from cyclodextrin cavity

Cyclodextrins are known to alter the absorptivity of the guest molecules, therefore, analytical methods that are based on the spectrophotometric data present accuracy problems. In this work, using RP-HPLC methods for naproxen-cyclodextrins quantitation, extensive analytical inaccuracies are detected. Competitive complexation technique is utilised in an attempt to develop an analytical method enabling the determination of naproxen as a free drug. For this reason, stationary phases with silica ligands that can function as competing agents were used, thus contributing to the drug release. The release of the drug from cyclodextrins complexes is achieved by modification of the thermodynamic parameters that determine the stability constant, by changing: the interactions with the mobile phase components (e.g. pH, organic modifier, competitive agents) and the interactions with the stationary phase ligands (C8). After studying the parameters affecting the interaction between the alkyl-chain C8 and naproxen:cyclodextrin complexes, we developed and validated a new specific method for the accurate determination of the drug. Consecutive accumulation of the cyclodextrins molecules on the stationary phase was studied.     

Application of different modes of thin-layer chromatography and mass spectrometry for the separation and detection of large and small biomolecules

Biomolecules are widespread throughout the world. A biomolecule is any organic molecule produced by a living organism, including large polymeric molecules such as proteins, polysaccharides and nucleic acids. Many sample preparation techniques are used in biomolecule analysis; the method selected depends on the complexity of the sample, the nature of the matrix and the analytes, and the analytical technique available. This review covers the current state of knowledge on thin-layer chromatography and mass spectrometry for qualitative analysis of biomolecules. In the first part of the paper the reader will gain useful information to avoid some problems about performing various modes of thin-layer chromatography combined with mass spectrometry experiments and in the second part he will find useful information for application of these techniques for separation, detection, and qualitative investigation of structures and quantitative determination of biomolecules such as proteins, peptides, oligonucleotides, amino acids, DNA, RNA, and lipids.     

Time-dependent density-functional theory calculations of triplet-triplet absorption

We present density-functional theory calculations of triplet-triplet absorption by three different approaches based on time-dependent density-functional theory (DFT): unrestricted DFT linear response, open-shell restricted DFT linear response applied to the triplet state, and quadratic response with triplet excitations applied to the ground state. Comparison is also made with corresponding results obtained by Hartree-Fock and multiconfiguration self-consistent-field response theory. Two main conclusions concerning triplet-triplet transitions are drawn in this study: First, the very good agreement between unrestricted and restricted DFT results indicates that spin contamination of the triplet state is not a serious problem when computing triplet-triplet spectra of common organic molecules. Second, DFT response calculations of triplet-triplet transitions can be affected by triplet instability problems, especially for the combination of DFT quadratic response with functionals containing fractional exact Hartree-Fock exchange.     

Single chirality extraction of single-wall carbon nanotubes for the encapsulation of organic molecules

The hollow inner spaces of single-wall carbon nanotubes (SWCNTs) can confine various types of molecules. Many remarkable phenomena have been observed inside SWCNTs while encapsulating organic molecules (peapods). However, a mixed electronic structure state of the surrounding SWCNTs has impeded a detailed understanding of the physical/chemical properties of peapods and their device applications. We present a single-chirality purification method for SWCNTs that can encapsulate organic molecules. A single-chiral state of (11,10) SWCNTs with a diameter of 1.44 nm, which is large enough for molecular encapsulation, was obtained after a two-step purification method: metal-semiconductor sorting and cesium-chloride sorting. The encapsulation of C(60) to the (11,10) SWCNTs was also succeeded, promising a route toward single-chirality peapod devices.     

Chemical analysis in the submillimetre spectral region with a compact solid state system

A new analytical system that uses the rotational signatures of gas phase molecules is described and demonstrated. It uses a solid state source to probe molecular systems in the millimetre and submillimetre wave range, the only region of the electromagnetic spectrum not yet used extensively for analytical purposes. It employs the FAst Scan Submillimetre Spectroscopy Technique (FASSST), which leads to an especially simple system architecture. Among the attributes of the system are generality, sensitivity, 'absolute' specificity, small size, simplicity, and the potential for very low cost. Applications to problems of analytical interest are also discussed.     

Glass transition and phase state of organic compounds: dependency on molecular properties and implications for secondary organic aerosols in the atmosphere

Recently, it has been proposed that organic aerosol particles in the atmosphere can exist in an amorphous semi-solid or solid (i.e. glassy) state. In this perspective, we analyse and discuss the formation and properties of amorphous semi-solids and glasses from organic liquids. Based on a systematic survey of a wide range of organic compounds, we present estimates for the glass forming properties of atmospheric secondary organic aerosol (SOA). In particular we investigate the dependence of the glass transition temperature T(g) upon various molecular properties such as the compounds' melting temperature, their molar mass, and their atomic oxygen-to-carbon ratios (O:C ratios). Also the effects of mixing different compounds and the effects of hygroscopic water uptake depending on ambient relative humidity are investigated. In addition to the effects of temperature, we suggest that molar mass and water content are much more important than the O:C ratio for characterizing whether an organic aerosol particle is in a liquid, semi-solid, or glassy state. Moreover, we show how the viscosity in liquid, semi-solid and glassy states affect the diffusivity of those molecules constituting the organic matrix as well as that of guest molecules such as water or oxidants, and we discuss the implications for atmospheric multi-phase processes. Finally, we assess the current state of knowledge and the level of scientific understanding, and we propose avenues for future studies to resolve existing uncertainties.     

Surfactant encapsulated DNA: structure characterization and interaction with dye molecules in organic media

The recognition of electrostatically-bound DNA-didodecyldimethylammonium (DNA-DDDA) complex by three dye molecules, acridine orange (AO), ethidium bromide (EB) and 5,10,15,20-tetrakis(4-N-methylpyridyl) porphyrin tetra(p-toluenesulfonate) (TMPyP) in organic media was investigated through 1H NMR, UV-vis, and circular dichroism (CD) spectroscopies. When the organic solvent in which DNA-DDDA complex dissolves is changed from ethanol to chloroform, the adsorbed AO undergoes a reversible transformation from a monomer to a highly aggregated state at the interface between DNA and DDDA. EB also adsorbs at the interface between DNA and DDDA when EB interacts with the DNA-DDDA complex in organic media, but its existing state is independent of the used solvents. The third dye, TMPyP cation can intercalate into the G-C region while its anionic p-tosylate counterion remains unbound when it mixes with DNA complex in organic media. The complexes of DDDA with previously recognized DNA by the three dye molecules (DNA-dye), respectively, are also investigated. AO seems having changed its location from the grooves of DNA to the interface between DNA and DDDA after DNA-AO complex was electrostatically encapsulated with DDDA. The aggregation behavior of AO also shows a dependence on the polarity of the organic solvent. EB molecules are believed to intercalate into the base pairs of DNA in aqueous solution. The intercalation mode is still maintained after the encapsulation for DNA-EB in organic solvents, which is different from the situation between DNA-DDDA complex and EB. But in both cases, the existing states of EB are independent of the polarity of the organic solvents. Finally, TMPyP in the complex of DNA-TMPyP and DDDA is also judged to intercalate into the G-C region of DNA while its anionic p-tosylate counterion remains separated from DNA complex, which is similar to its interaction with DNA-DDDA complex in organic media. These data also strongly suggest that the intercalation state of TMPyP is more stable than its adsorption state in grooves when it is recognized with DNA. The present results are significant for the designs of both laser dye and conductive materials.     

飞行时间质谱仪新技术的进展及应用

本文介绍了近几年来发展应用于飞行时间质谱(TOF-MS)仪中的软电离技术。质子转移电离实现了可挥发性有机物的高灵敏度分析;真空紫外灯电离源体积小、简单,利于便携式仪器;电喷雾解吸电离在线、无损和灵敏度高,在公共安全方面具有很大的发展潜力,而且还可以直接用于活的生物体表面分析;大气压下的在线直接分析电离技术利用载气分子的激发态使得被分析化合物电离得到分子离子。针对不同的电离方法简单评述了其性能及应用,同时介绍了飞行时间质谱在串联方面的新发展,以及TOF-MS在仪器微型化方面的进展及其应用,并对飞行时间质谱仪今后的发展作了展望。     

Versatile electrochemiluminescent organic emitters

Organic luminophores for electrochemiluminescence (ECL), namely polycyclic aromatic hydrocarbons, have been the first molecules investigated since the beginning of ECL studies. Moving from organic solvents to water-based solutions in view of analytical applications, the attention on ECL emitters shifted to soluble inorganic complexes, which prevailed in both fundamental and applied research. However, the investigation of organic molecules has recently revived owing to new synthetic procedures and concepts. Polymeric nanoparticles, surface functionalisation, aggregation-induced emission (AIE), and thermally activated delayed fluorescence (TADF) sparked the research with renovated interest for organic molecules. Here, we introduce and summarise these new concepts behind organic emitters for ECL.     

有机电致发光器件的界面问题研究进展

低驱动电压下有机电致发光器件(0ELD)中的界面结构对器件效率和寿命有重要影响。本文简要介绍近年来以多种分析技术和方法研究0ELD界面分子结构、能带结构、激发态特性及反应等获得的主要结果,并提出了目前该领域存在的一些问题及发展趋势。     

Recent advances in the application of CE to forensic sciences, an update over years 2009-2011

The present article reviews and comments the applications of capillary electrophoresis in the different areas of forensic sciences covering the time from the second half of 2009 until the first part of 2011, being the latest update of previous reviews covering the years from 2001 to 2009. Numerous articles reporting applications of capillary electrophoresis to analytical problems of potential interest for the forensic researchers and scientists can be found in the most qualified journals of analytical chemistry, analytical biochemistry, pharmacology, toxicology, laboratory medicine, human genetics, etc. However, the present review has been focused on discussing only the most relevant examples of analytical applications of capillary electrophoretic and electrokinetic techniques published in the following fields: (i) illicit and abused drugs, (ii) ions and small molecules of forensic interest, (iii) proteins and peptides of forensic interest, (iv) dyes and inks, (v) forensic DNA. The present review collects and comments on 60 references.     

Self-consistent combination of the three-dimensional RISM theory of molecular solvation with analytical gradients and the Amsterdam density functional package

The three-dimensional reference interaction site model with the closure relation by Kovalenko and Hirata (3D-RISM-KH) in combination with the density functional theory (DFT) method has been implemented in the Amsterdam density functional (ADF) software package. The analytical first derivatives of the free energy with respect to displacements of the solute nuclear coordinates have also been developed. This enables study of chemical reactions, including reaction coordinates and transition state search, with the molecular solvation described from the first principles. The method yields all of the features available by using other solvation approaches, for instance infrared spectra of solvated molecules. To evaluate the accuracy of the present method, test calculations have been carried out for a number of small molecules, including four glycine conformers, a set of small organic compounds, and carbon nanotubes of various lengths in aqueous solution. Our predictions for the solvation free energy agree well with other approaches as well as experiment. This new development makes it possible to calculate at modest computational cost the electronic properties and molecular solvation structure of a solute molecule in a given molecular liquid or mixture from the first principles.     

Analytical and experimental aspects of molecular-sieve chromatography

The object of this Review is to give analytical chemists a general introduction to molecular-sieve chromatography, a form of liquid chromatography in which molecular size forms the primary basis for separation, although other effects are also frequently involved. The technique can be used for inorganic and organic molecules, both monomeric and polymeric, in either aqueous or non-aqueous systems. The range of xerogel and aerogel molecular-sieves available at present is described, and the experimental techniques involved in their use are emphasized rather than mechanistic and theoretical considerations. The references cited have been selected critically to form a balanced, up-to-date review and also to indicate the general analytical potential and scope for future development of the technique. An Appendix lists the commercial sources of molecular-sieves and calibration standards.     

Molecular challenges in modern chemometrics

Since the very beginning of the discipline, chemometrics has mainly focussed on analytical chemical problems such as calibration. With the growing importance of databases and applications in medicinal and computational chemistry, the domains of analytical chemistry and chemometrics have been enlarged significantly in recent years. Especially the relation between molecular structure and function has become of considerable interest. Despite the huge quantities of data that are available nowadays, it is often difficult to recognise and extract relevant chemical information for the problem at hand. One of the main obstacles is the definition of an appropriate representation of a molecule. Although a variety of different representations are used, none are generally applicable.

This paper focuses on the challenges that arise in the chemometrical analysis of molecular structures, the relation between structure and function and the relation between molecular representation and chemometrical modelling. Exciting opportunities for further research are illustrated using an example concerning the prediction of co-crystallisation behaviour for small organic molecules with cephalosporin antibiotics.     

Organic Fluorophores Exhibiting Highly Efficient Photoluminescence in the Solid State

There has been extensive research on the development of organic optoelectronic devices, such as organic light‐emitting diodes, organic field‐effect transistors, and organic solid‐state lasers from various viewpoints, ranging from basic studies to practical applications. As organic materials are used as solids in these devices, the importance of organic chromophores that exhibit intense emissions of visible light in the solid state is greatly increasing in the field of organic electronics. However, highly efficient emission from organic solids is very difficult to attain because most organic emitting materials strongly tend to cause concentration quenching of the luminescence in the condensed phase. Therefore, in order to generate and improve organic optoelectronic devices, it is necessary to design novel chromophores that exhibit superior solid‐state emission performance. This Focus Review covers the recent development of highly emissive organic small molecules whose photoluminescence quantum yields in the solid state have been reported. Following the introduction, the photophysical processes of excited molecules are briefly reviewed. Subsequently, organic solid fluorophores are described with an emphasis on the characteristics of their molecular structures.     

Thermochemolysis in search for organics in extraterrestrial environments

It has been suggested that extraterrestrial organic material may well represent an important part of the organic material available for the origin of life. It may be expected that early life on Mars was similar to prokaryotic life on Earth and whatever preceded the prokaryotes. Detection of markers of microorganisms on Mars is then a key point in the search for life. The analytical technique has to be robust, sensitive and non-specific due to the large scope of targeted molecules. The main objective of this work is to present the capabilities of a TMAH-PY-GC–MS technique for the in situ analysis of organic matter in extraterrestrial soil samples. Two Martian analogues were analyzed to validate the technique. Biomarkers of microbial and higher plants origin such as lipids (n-alkenes, fatty acids) and carbohydrates were detected in samples. In the two samples, fatty acids had a microbial origin. On the other hand, n-alkenes and n-alkanols were from preserved higher plants biopolymers. TMAH-PY-GC–MS technique presented the advantage to wider the scopes of targeted molecules without adding additional device as pyrolysers are already used in spacecraft.     

Quantum-chemical study of spectral and luminescent properties and photochemistry of polyatomic molecules

The potential of a package of quantum-chemical software programs for exploring physicochemical problems pertaining to polyatomic organic molecules is highlighted. The results of investigation into the spectral, luminescent, and photochemical properties of molecules are discussed. The necessity of development of target-oriented models for studying the problems of physics and chemistry of molecules is emphasized.     

Site-selective patterning of organic luminescent molecules via gas phase deposition

In this paper, we present a bottom-up approach to pattern organic luminescent molecules with a feature size down to sub-100 nm over wafer-sized areas. This method is based on the selective gas deposition of organic molecules on self-organized patterned structures, which consist of an organic monolayer with two different phases rather than different materials. The site selectivity is controllable by deposition rate and the pattern features. The reason for the site selectivity may be due to the nucleation and diffusion behaviors of the deposited organic molecules on different monolayer phases.     

Supramolecular organization of toluidine blue dye in solid amorphous phases

Toluidine blue (TB) dye molecules are intensively utilized for large-area photophysics applications such as carcinoma detection, photoinactivation of bacteria, biosensors, and photovoltaic cells. Understanding the nature of the TB aggregation state becomes an essential point of the research process in order to know the structure-function relationship and to foresee technological applications of this class of metachromatic-dye molecules. However, no structural information on toluidine blue is available in the literature, maybe because of the poor crystalline character of the aggregate. Here, we present the first structural determination of TB organic molecules using the energy dispersive X-ray diffraction technique. The investigation highlights dimeric arrangements of stacked molecules in antiparallel fashion, forming a superstructure of two dimers in a transverse arrangement. The behavior of the TB higher aggregates indicates that these dye molecules, in spite of repulsion due to similar charge (cationic dyes), undergo self-aggregation to form helical conformations.