Structures and energetics of C3H6S isomers: a Gaussian-3 ab initio study

Twenty-two isomers/conformers of C₃H₆S^+√ radical cations have been identified and their heats of formation (ΔH_f) at 0 and 298 K have been calculated using the Gaussian-3 (G3) method. Seven of these isomers are known and their ΔH_f data are available in the literature for comparison. The least energy isomer is found to be the thioacetone radical cation (4⁺) with C_2v symmetry. In contrast, the least energy C₃H₆O^+√ isomer is the 1-propen-2-ol radical cation. The G3 ΔH_f298 of 4⁺ is calculated to be 859.4 kJ mol⁻¹, ca. 38 kJ mol⁻¹ higher than the literature value, ≤821 kJ mol⁻¹. For allyl mercaptan radical cation (7⁺), the G3 ΔH_f298 is calculated to be 927.8 kJ mol⁻¹, also not in good agreement with the experimental estimate, 956 kJ mol⁻¹. Upon examining the experimental data and carrying out further calculations, it is shown that the G3 ΔH_f298 values for 4⁺ and 7⁺ should be more reliable than the compiled values. For the five remaining cations with available experimental thermal data, the agreement between the experimental and G3 results ranges from fair to excellent.

Cation CH₃CHSCH₂^+√ (10⁺) has the least energy among the eleven distonic radical cations identified. Their ΔH_f298 values range from 918 to 1151 kJ mol⁻¹. Nevertheless, only one of them, CH₂=SCH₂CH₂^+√ (12⁺), has been observed. Its G3 ΔH_f298 value is 980.9 kJ mol⁻¹, in fair agreement with the experimental result, 990 kJ mol⁻¹.

A couple of reactions involving C₃H₆S^+√ isomers CH₂=SCH₂CH₂^+√ (12⁺) and trimethylene sulfide radical cation (13⁺) have also been studied with the G3 method and the results are consistent with experimental findings.     

Structure and stability of ammonium-sulfate and guanidium-sulfate complex

Ab initio (HF/6-31G^** and B3LYP/6-31 + + G^**) methods have been used to study the stability and structure of complexes between CH₃SO⁻₃ and CH₃NH⁺₃ or C(NH₂)⁺₃. Results show that no hydrogen jump is involved in the complex formations, which is different from previous work studying complexes between CH₃COO⁻ and CH₃NH⁺₃. In addition, we have studied complexes between CH₃SO⁻₃ and HC(NH₂)⁺₃ or ⁺H₃NC(NH₂)₃, all of which have a cage structure.     

Oxidative alkylation of (η-C5Me5)2TiR (R = Cl, Me, Et, CH=CH2, Ph, OMe, N=C(H)Bu) to (η-C5Me5)2Ti(Me)R by group 12 organometallic compounds MMe2

Oxidative alkylation of Cp^*₂TiX (Cp^*: η⁵-C₅Me₅; X = OMe, Cl, N=C(H)^tBu) and Cp^*₂TiMe by CdMe₂ or ZnMe₂ gives diamagnetic Cp^*₂Ti(Me)X and Cp^*₂TiMe₂ respectively, and cadmium or zinc. The reactions of Cp^*₂TiR (R = Et, CH=CH₂, Ph) with MMe₂ (M = Cd, Zn) give statistical mixtures of Cp^*₂Ti(Me)R, Cp^*₂TiMe₂ and Cp^*₂TiR₂. Dimethylmercury does not react with Cp^*₂TiX.     

Ab initio study of some peroxides. HOOH, CH3OOH and, CH3OOCH3

The geometries of HOOH, CH₃OOH, and CH₃OOCH₃, were optimized with different basis sets (3-21G, 6-31G^*(*) and D95^**) at different levels of theory (HF, MP2, MP4, and CI). HF/3-21G optimizations result in planar trans conformations for all three peroxides. HF/6-31G^** calculations predict skew conformations for HOOH and CH₃OOH, but a planar trans struture for CH₃OOCH₃. For the larger basis set the calculated bond lengths, especially the O-O bonds, are too short. Optimizations for HOOH including electron correlation at the MP2, MP3, MP4, CI, and CCD level improve the agreement for bond lengths and the OOH angle, but result in dihedral angles Which are too large by 3– 8°. In the case of CH₃OOCH₃, similar calculations at the MP2 and CI level predict planar trans structures instead of the experimentally observed skew conformation. On the other hand, MP4 single point calculations at MP2 optimized parameters result in a correct skew structure. For all three peroxides a computationally “economic” method, i.e., single point calculations at MP2 or MP4 level with HF/3-21G optimized parameters, result in close agreement between calculated and experimental structures.     

A Gaussian-2 ab initio study of [C2H5S] ions: III. H2 and CH4 eliminations from CH3CHSH and CH3SCH2

Gaussian-2 ab initio calculations were performed to examine the six modes of unimolecular dissociation of cis-CH₃CHSH⁺ (1⁺), trans-CH₃CHSH⁺ (2⁺), and CH₃SCH₂⁺ (3⁺): 1⁺→CH₃⁺+trans-HCSH (1); 1⁺→CH₃+trans-HCSH⁺ (2); 1⁺→CH₄+HCS⁺ (3); 1⁺→H₂+c-CH₂CHS⁺ (4); 2⁺→H₂+CH₃CS⁺ (5); and 3⁺→H₂+c-CH₂CHS⁺ (6). Reactions (1) and (2) have endothermicities of 584 and 496 kJ mol⁻¹, respectively. Loss of CH₄ from 1⁺ (reaction (3)) proceeds through proton transfer from the S atom to the methyl group, followed by cleavage of the C–C bond. The reaction pathway has an energy barrier of 292 kJ mol⁻¹ and a transition state with a wide spectrum of nonclassical structures. Reaction (4) has a critical energy of 296 kJ mol⁻¹ and it also proceeds through the same proton transfer step as reaction (3), followed by elimination of H_2. Formation of CH₃CS⁺ from 2⁺ (reaction (5)) by loss of H₂ proceeds through protonation of the methine (CH) group, followed by dissociation of the H₂ moiety. Its energy barrier is 276 kJ mol⁻¹. On both the MP2/6-31G* and QCISD/6-31G* potential-energy surfaces, the H₂ 1,1-elimination from 3⁺ (reaction (6)) proceeds via a nonclassical intermediate resembling c-CH₃SCH₂⁺ and has a critical energy of 269 kJ mol⁻¹.     

Protonated ethanol and its neutral counterparts

Collisionally activated dissociation and neutralization-reionization experiments reveal that protonation of ethanol leads to two distinct isomers, the classical ion CH₃CH₂OH⁺₂ and the proton-bound complex C₂H₄…H⁺…OH₂. The neutral counterpart of the latter is unstable, whereas that of the former can be produced in a bound state if the CH₃CH₂OH⁺₂ precursor ion is formed under low ion source pressure conditions and, thus, with higher internal energies. This suggests that there are substantial differences in the geometries of CH₃CH₂OH⁺₂ and the hypervalent CH₃CH₂OH₂ ·. This provides only a partial explanation for unusual isotope effects; C₂H₅OD₂ ·, CH₃CD₂OD₂ ·, and CD₃CH₂OD₂ · are substantially more stable than C₂D₅OD₂ · and C₂H₅OH₂ ·.     

Ab initio and density function theory computational studies of the CH4 + H → CH3 + H2 reaction

The activation barrier for the CH₄ + H → CH₃ + H₂ reaction was evaluated with traditional ab initio and Density Functional Theory (DFT) methods. None of the applied ab initio and DFT methods was able to reproduce the experimental activation barrier of 11.0-12.0 kcal/mol. All ab initio methods (HF, MP2, MP3, MP4, QCISD, QCISD(T), G1, G2, and G2MP2) overestimated the activation energy. The best results were obtained with the G2 and G2MP2 ab initio computational approaches. The zero-point corrected energy was 14.4 kcal mol⁻¹. Some of the exchange DFT methods (HFB) computed energies which were similar to the highly accurate ab initio methods, while the B3LYP hybrid DFT methods underestimated the activation barrier by 3 kcal mol⁻¹. Gradient-corrected DFT methods underestimated the barrier even more. The gradient-corrected DFT method that incorporated the PW91 correlational functional even generated a negative reaction barrier. The suitability of some computational methods for accurately predicting the potential energy surface for this hydrogen radical abstraction reaction was discussed.     

Density functional study of molecular properties of hydrazoic acid and methyl azide

Density functional calculations for hydrazoic acid HN₃ and methyl azide CH₃N₃ and for the respective singly ionized structures HN⁺₃ and CH₃N⁺₃ are reported. An analysis of the electrostatic solvent effects, based on the self-consistent reaction field approach, on the molecular properties and conformational equilibrium of CH₃N₃ is also reported. The results are sensitive to the basis set quality and show some dependence on the different representations for the exchange-correlation functions. For HN₃ very good agreement with experiment is observed for several properties, such as the geometry, dipole moment, vibrational frequencies and for the adiabatic first ionization energy. For CH₃N₃ the energy difference between eclipsed (ec) and staggered (st) conformers (δ_ec-st) is 2.5 kJ mol⁻¹, in good agreement with the experimental value (2.9 kJ mol⁻¹). However, for CH₃N⁺₃, δ_ec-st is −3.2 kJ mol⁻, reflecting a significant modification of the methyl group rotational potential after ionization. Solvent effects on the molecular properties of CH₃N₃ are important when it is solvated in a polar medium. The most significant modifications concern the dipole moment and the frequencies related to the CH₃ symmetric stretch and torsion vibrational modes.     

Distinguishing conventional and distonic radical cations by using dimethyl diselenide

Dimethyl diselenide is demonstrated to be among the most powerful reagents used to identify distonic radical cations. Most such ions readily abstract CH₃Se^. from dimethyl diselenide. The reaction is faster and more exclusive than CH₃S^. abstraction from dimethyl disulfide, a reaction used successfully in the past to identify numerous distonic ions. Very acidic distonic ions, such as HC⁺(OH)OCH^.₂, do not undergo CH₃Se^. abstraction, but instead protonate dimethyl diselenide. In sharp contrast to the reactivity of distonic ions, most conventional radical cations were found either to react by exclusive electron transfer or to be unreactive toward dimethyl diselenide. Hence, this reagent allows distinction of distonic and conventional isomers, which was demonstrated directly by examining two such isomer pairs. To be able to predict whether electron transfer is exothermic (and hence likely to occur), the ionization energy of dimethyl diselenide was determined by bracketing experiments. The low value obtained (7.9 ± 0.1 eV) indicates that dimethyl diselenide will react with many conventional carbon-, sulfur-, and oxygen-containing radical cations by electron transfer. Nitrogen-containing conventional radical cations were found either to react with dimethyl diselenide by electron transfer or to be unreactive.     

Interaction of the E(D) state of Co with a jahn-teller active mode in [N(CH3)4]2CoCl4

The transition ⁴A₂ → ²E of Co²⁺ has been investigated in [N(CH₃)₄]₂CoCl₄ using optical absorption and magnetic circular dichroism. Three groups of lines with 274 cm⁻¹ progressions were observed. The structure of the spectra indicates a J-T interaction in the ²E state with strong depression of the frequency of the J-T active mode. The ground-state splitting is 7.2 cm⁻¹.     

Gaseous metal silicides. II. Thermodynamic study of the molecules AuSi, Ausi2 and Au2Si with a mass spectrometer

The gaseous equilibria involving the molecules AuSi, AuSi₂ and Au₂Si have been studied by means of the Knudsen effusion technique combined with mass spectrometric analysis of the vapor. The experimentally determined reaction enthalpies were combined with appropriate literature data to obtain the following atomization energies (in kJ mole⁻¹): D⁰₀[AuSi(g)] = 301.0 ± 6.0, D⁰₀[Au₂Si(g)] = 582.7 ± 15 and D⁰₀[AuSi₂(g)] = 602.1 ± 15. The corresponding D⁰₂₉₈ values are: 305.2 ± 6.0, 589.1 ± 15 and 610.5 ± 15, and the standard heats of formation, ΔH⁰_f,298, 518.6, 602.9 and 668.9, respectively.

Comparison of the atomization energies of these silicon—gold molecules with the literature values for the corresponding germanium—gold and tin—gold molecules indicates similarity in the nature of bonding.     

Ab initio computation of the potential energy surfaces of the water·hydrocarbon complexes H2O·C2H2, H2O·C2H4 and H2O·CH4: minimum energy structures, vibrational frequencies and hydrogen bond energies

On the basis of ab initio MP2/6–31 + + G(2d,2p) calculations, we examined the potential energy surfaces of the water·hydrocarbon complexes H₂O·CH₄, H₂O·C₂H₂ and H₂O·C₂H₂ to locate all the minimum energy structures and estimate the hydrogen bond energies and vibrational frequencies associated with the C(spⁿ)---H·O and the O---H·C(spⁿ) bonds (n = 1−3). Our calculations show that H₂O·C₂H₂, H₂O·C₂H₄ and H₂O·CH₄ have two minimum energy structures (i.e., the C---H·O and O---H·C hydrogen bond forms), but H₂O·C₂H₄ has only one when the vibrational motion is taken into account, the O---H·C hydrogen bond form. We have also computed the barrier for the interconversion from one minimum to the other. The fully optimized geometries of H₂O·CH₄, H₂O·C₂H₄ and H₂O·C₂H₂ as well as the vibrational shifts of the C---H stretching frequencies in their C---H·O hydrogen-bonded forms are in good agreement with the available experimental data. The calculated hydrogen bond energies show that the C(spⁿ---H·O bond strengths decrease in the order C(sp)---H·O>C(sp²)---H·O>C(sp³)---O>C(sp³---H·O, which is also consistent with the available experimental data.     

Crystal Structure, Nano-particle Morphology and Interaction with ATP of [ NH3 CH2 CH（ NH2 ） CH3 ]2 [ M（ Ⅵ ） O2 （ OC6 H4 O）2 ] （M = Mo0. 6 W0. 4 ） and Its Activity to Promote DNA Cleavage

The title complex [NH_3CH_2CH(NH_2)CH_3]_2 [M(Ⅵ)O_2(OC_6H_4O)_2](M= Mo_(0.6)W_(0.4))was synthesized via a simple solution-phase chemical route.The determination of single crystal X-ray diffraction revealed that the title compound is crystallized in a monoclinic system with P2(1)/n space group,a=1.0913(10)nm,b=1.0442(10)nm,c=1.8842(19)nm,α=90°,β=96.530(17)°,γ=90°,Z=4,and V=2.133(4)nm3.The mononuclear anionic unit [M(Ⅵ)O2(OC6H4O)2]2-displays chiral pseudo-octahedral [MO_6] coordination geometry and is linked by chiral cations via hydrogen bond and π…π stacking interaction.The transmission electron microscopy images show that the title complex is comprised of nano-particles with diameters ranging from 20 to 50 nm.The NMR study shows the 1H downfield chemical shifts of [NH_3CHaHbCH(NH_2)CH_3] cations in the title complex when it is mixed with adenosine-triphosphate(ATP),and the chemical shift difference between Ha and Hb is increased greatly,and most of the catecholate ligands dissociate from the central metal atoms.The DNA cleavage activity experiment reveals that DNA cleavage promoted by the title complex is lower than that by Na_2MoO_4 which possesses antitumor pro-perty,but higher than that by Na_2WO_4.     

Synthesis and crystal structure of the double barium-titanium methoxide [Ba2Ti4O(OMe)18(MeOH)7]·MeOH

The X-ray diffraction study of crystals isolated from solutions obtained by reaction of Ba(OMe)₂ with Ti(OMe)₄ (molar ratio 1:2) in methyl alcohol was carried out; the crystals of the methanol solvate of the double barium-titanium methoxide, [Ba₂Ti₄O(OMe)₁₈(MeOH)₇]·MeOH (1), contain two Ba²⁺ cations with different environments and two kinds of anionic binuclear titanium complexes with and without oxo-ligand, and thus can be formulated as [Ba(MeOH)₂]²⁺[Ba(MeOH)₅]²⁺[Ti₂O(OMe)₈]²⁻[Ti₂(OMe)₁₀]²⁻·MeOH.     

Spectres infrarouges et structure des anions 2-methylallyle, CH3-C(CH2)2- et triméthylèneméthane, C(CH2)3

The infrared spectra of solid samples of C₄H₇K and C₄D₇K have been investigated in the 4000 to 30 cm⁻¹ range. A complete assignment of intramolecular fundamentals of C₄H₇⁻ and C₄D₇⁻ ions and of potassium-allyl vibrations is proposed and the intramolecular force constants are calculated. The C(CH₂)₃²⁻ anion has been identified spectroscopically. Structures of C₃H₅⁻, C₄H₇⁻ and C(CH₃)₃²⁻ are discussed and compared with those optimised by the MINDO/3 method.     

Darstellung und Molekülstruktur des (μ-Alkylidenamido)titanocenkomplexes [(C5H5)2TiCl]2[μ-{N=C(CH2C6H5)C(CH2C6H5)=N}]

Reduction of (C₅H₅)₂TiCl₂ with Zn in presence of benzyl cyanide gives the (μ-alkyl-ideneamido)titanocene complex [(C₅H₅)₂TiCl]₂[μ-{N=C(CH₂C₆H₅)---C(CH₂C₆H₅)=N}] with C---C bond formation between two benzyl cyanide molecules.

X-ray structure investigation indicates a symmetrical structure. The C=N distances are smaller than usual, the Ti---N distances are very short, and the Ti---N---C angle differs only a little from 180°, which infers a heteroallene structure of the complex.     

Theoretical calculational studies on the mechanism of thermal dissociations for RN3 (R=CH3, CH3CH2, (CH3)2CH, (CH3)3C)

Mechanisms of RN₃ (R=CH₃, CH₃CH₂, (CH₃)₂CH, (CH₃)₃C) dissociations are proposed based on CAS, MP2 and B3LYP methods. The energy gaps between the ground-state reactants RN₃ and the intersystem crossing (ISC) points are only a little lower than respective potential energy barriers of the spin-allowed reactions, ¹RN₃ → ¹RN + ¹N₂. The ISC point, therefore, is considered as a transition state of the spin-forbidden reactions, ¹RN₃ → ³RN + ¹N₂. The methods of IRC and topological analysis of electron density are used to explain and predict the thermal dissociation pathways of the reactions studied.     

The discrimination between triplet state and radical cation in the pulse radiolysis of bithiophene in CCl4

The triplet state (³2T) and the radical cation (2T⁺√) of 2,2′-bithiophene (2T) are characterized by pulse radiolysis in CCl₄. Two main absorption bands at 360 and 420 nm are respectively attributed to ³2T* and to 2T⁺√. The triplet, induced in an excited state through a Förster mechanism, undergoes a conformational rearrangement (k₆=(6.8±0.9)×10⁶ s⁻¹). The radical cation is produced both through a resonance charge transfer and a second diffusional process; the two oxidizing species are respectively CCl₄⁺√ and (CCl⁺₃Cl⁻)_solv through the mediation of a singlet excited state, ¹2T*.     

The gaseous azide ion, N3: Enthalpy of formation, ΔHf(N3(g)) and charge distribution lattice energies of sodium, potassium and rubidium azides

The calculations reported here assign a charge q_N = −0.52 electron units to the terminal nitrogen atoms in the azide ion and a value of 141.9 kJ mole⁻¹ to the enthalpy of formation of the gaseous azide ion, ΔH_f⁰(N₃⁻(g)). The total lattice potential energies are found to be: E_pot(NaN₃) = 725.1 kJ mole⁻¹; E_pot(KN₃) = 650.7 kJ mole⁻¹ and E_pot(RbN₃) = 632.1 kJ mole⁻¹.     

Hydrothermal synthesis, crystal structure and characterization of [Zn(H2O)4]2 [H2As6V15O42(H2O)]·2H2O

The compound [Zn(H₂O)₄]₂[H₂As₆V₁₅O₄₂(H₂O)]·2H₂O (1) has been synthesized and characterized by elemental analysis, IR, ESR, magnetic measurement, third-order nonlinear property study and single crystal X-ray diffraction analysis. The compound 1 crystallizes in trigonal space group R3, a=b=12.0601(17) Å, c=33.970(7) Å, γ=120°, V=4278.8(12) Å³, Z=3 and R1(wR2)=0.0512 (0.1171). The crystal structure is constructed from [H₂As₆V₁₅O₄₂(H₂O)]⁴⁻ anions and [Zn(H₂O)₄]²⁺ cations linked through hydrogen bonds into a network. The [H₂As₆V₁₅O₄₂(H₂O)]⁶⁻ cluster consists of 15 VO₅ square pyramids linked by three As₂O₅ handle-like units.