Doubly charged ion mass spectra: V—Oxygen containing hydrocarbons

Doubly charged ion mass spectra were obtained for 46 low molecular weight oxygen containing compounds. A double focusing Hitachi RMU-7L mass spectrometer, operated at 3.2 kV accelerating voltage, was used to measure spectra for aliphatic alcohol, ketone, ether, aldehyde, ester and acid molecules, as well as several aromatic oxygen containing compounds. In general, the spectra were dominated by fragment ions which resulted from extensive H loss and C? C bond rupture as well as O elimination from the doubly charged molecular ions. Total product ion intensities from doubly charged ion spectra of aliphatic oxygen containing compounds were approximately 1% of the corresponding total ion intensity in the benzene doubly charged ion spectrum. Appearance energies for forming prominent doubly charged molecular and fragment ions were determined. Measured values ranged from 26 to 45 eV. A geometry optimized quantum mechanical SCF treatment was used to compute the energies, charge densities and structures for several of these oxygen containing doubly charged ions.     

Synthesis,spectral properties and conformational preferences of macrocyclic compounds containing 2,5-dithio-1,3,4-thiadiazole subunits

The syntheses of macrocyles 1–6, containing 2,5 - dithio - 1,3,4 - thiadiazole subunits connected by 1,2-, 1,3- and 1,4-bis(methylene)benzenes, as well as of the appropriate open-chain model compounds 7–12 are described. Structure proofs were afforded by their mass and ¹H NMR spectra. Different decompostion processes upon electron-impact are ascertained for compounds 1–12, depending on the position of the bridges and ortho substitution; therefore, the mass spectra can provide a sensitive diagnostic tool for structure elucidation of positional isomers. The NMR spectral data of macroycyles 1–6, coupled with those of the corresponding open-chain derivatives 7–12, indicate that the preferred conformations are determined primarily by the size and shape of their ring systems. Furthermore, variable-temperature NMR studies on intraannularly methyl substituted macrocyles 3 and 6 provide evidence that the 20-membered mesityl derivative 3 adopt the saddle-shape conformation (IV) (the energy barrier for the restricted rotation of methylene bridges if found to be ΔG^≠= 13.8 kcal/mole at + 5°), while the duryl groups in the 22-membered macrocycle 6 are free rotating even at ?60°.     

Can a Proton be Encapsulated in Tetraamido/Diamino Quaternized Macrocycles in Aqueous Solution and Electric Field?

The proton‐binding behavior of solvated tetraamido/diamino quaternized macrocyclic compounds with rigid phenyl and flexible phenyl bridges in the absence or presence of an external electric field is investigated by molecular dynamics simulation. The proton can be held through H‐bonding interactions with the two carbonyl oxygen atoms in macrocycles containing rigid (phenyl) and flexible (propyl) bridges. The solute–solvent H‐bonding interactions cause the macrocyclic backbones to twist to different extents, depending on the different bridges. The macrocycle with the rigid phenyl linkages folds into a cuplike shape due to π–π interaction, while the propyl analogue still maintains the ellipsoidal ringlike shape with just a slight distortion. The potential energy required for proton transfer is larger in the phenyl‐containing macrocycle than in the compound with propyl units. When an external electric field with a strength of 2.5 V nm^?1 is exerted along the carbonyl oxygen atoms, a difference in proton encircling is exhibited for macrocycles with rigid and flexible bridges. In contrast to encapsulation of a proton in the propyl analogue, the intermolecular solute–solvent H‐bonding and intramolecular π–π stacking between the two rigid phenyl spacers leads to loss of the proton from the highly distorted cuplike macrocycle with phenyl bridges. The competition between intra‐ and intermolecular interactions governs the behavior of proton encircling in macrocycles.     

Design,Synthesis and Structural Analysis of New Macrocycles Containing Dispiro-1,3-dioxane Units

The synthesis and the structure of new macrocycles containing semiflexible dispiro-1,3-dioxane units is reported. The structural analysis of the compounds is performed by high field NMR spectra, mass spectrometry investigations (MALDI, ESI-MS) and the solid state molecular structure obtained for two compounds by single crystal X-ray diffractometry. The dynamics of the macrocycles promoted by the flipping of the middle cyclohexane ring of the dispirane units is investigated using low temperature NMR experiments.

New macrocycles containing dispiro-1,3-dioxane units were investigated by NMR, X-ray diffractometry and mass spectrometry     

Doubly charged ion mass spectra. 7—acetylenes

Doubly charged ion mass spectra of 20 aliphatic and 3 aromatic acetylenic compounds have been measured using a double focusing Hitachi RMU-7L mass spectrometer. Spectra were obtained using 100 eV ionizing electron energy and 3.2 kV ion accelerating voltage. In general, the spectra of aliphatic type acetylenic compounds were dominated by fragment ions formed by extensive H loss from doubly charged molecular ions. Intense molecular ions were observed in the doubly charged ion spectra of phenyl-substituted acetylenes. Total product ion intensities for doubly charged ion spectra of acetylenic compounds were found to be smaller, in general, than the total product ion intensity observed in the benzene doubly charged ion mass spectrum. Measured appearance energies of intense product ions ranged from 24 to 47 eV. A geometry optimized quantum mechanical self-consistent field molecular orbital treatment was employed to compute energies and structural parameters of prominent ions in the doubly charged ion mass spectra of acetylenic compounds.     

Competing oxygen migrations in ortho nitro aromatic thioamides on electron impact

Interesting competitive oxygen migrations from the nitro group to the nitrogen and to the sulfur have been noticed during the mass spectral decomposition of ortho nitro aromatic thioamides on electron impact. The migration of the oxygen to the nitrogen of the thioamide function results in the formation of stable o-nitrosothiobenzoyl cation. The other novel ortho effect noticed in the ortho isomers is the transfer of an oxygen from the nitro group to the sulfur followed by the ejection of SO from the molecular ions. A mechanism involving the initial oxygen migration to the sulfur through a favourable 6-membered transition state followed by cyclization with the concomitant expulsion of SO is proposed for this process. Other interesting decomposition processes occurring as a consequence of this ortho effect have also been noticed. The proposed mechanisms for these processes are supported by mass analysed ion kinetic energy spectra and high voltage scans.     

Annulenoannulenes

Annulenoannulenes formally consist of two annulenes fused together. Hitherto, almost all the known representatives of this class of compounds were the strongly dehydrogenated forms, containing a few triple bonds and several cumulated double bonds. Besides ortho-annelated dehydroannulenoannulenes also such compounds containing bridges made up of two or four carbon atoms (“acetylene-cumulene” annulenoannulenes) were obtained by multistep syntheses. Most dehydroannulenoannulenes are stable and form colored crystals. In addition to dehydro[4n+2]annuleno[4n+2] annulenes with 14-, 18-, and 22-membered individual rings, two dehydro[4n]annuleno[4n+2]annulenes with 16- and 14-, and 16- and 18-membered rings have also been synthesized. Planar combinations of two [4n]-rings of this type and size are not known.—The dehydrogentated[14]annuleno[14]annulene containing a bridge of two carbon atoms has been studied in detail; however, the problem of the induction of a diamagnetic ring current in compounds of this type has still not been completely clarified.     

DOTP-manganese and -nickel complexes: from a tetrahedral network with 12-membered rings to an ionic phosphonate

DOTP (1,4,7,10-tetrakis(methylenephosphonic acid)-1,4,7,10-tetraazacyclododecane) was reacted hydrothermally with MnCl(2).2H(2)O and Ni(NO(3))(2).6H(2)O resulting in two structurally different compounds. Mn[C(3)NH(7)(PO(3)H(0.5))](4) crystallizes in the tetragonal space group P4/ncc, with a = 12.349(2) A, b = 12.349(2) A, c = 14.066(4) A, V = 2144.9(8) A(3), and Z = 4. Manganese atoms are tetrahedrally bonded by four phosphonate oxygen atoms from four equivalent ligands. All 12-membered macrocycles are connected in a "zigzag" manner by sharing manganese atoms and forming 22-membered cavities between each pair of two adjacent macrocycles. Ni[C(3)NH(6)(PO(3)H)](4)[Ni(H(2)O)(6)] crystallizes as an ion pair complex. Ni(1) is octahedrally coordinated to two pendent phosphonate oxygen atoms and four nitrogen atoms from the macrocyclic backbone. Ni(2) is surrounded by six coordinatedly bonded water molecules to form a hexaqua cation. The manganese complex shows ion exchange capability for Cs(+).     

Anion binding with some 22- and 28-membered selenaaza macrocycles: Structural aspects and Se NMR studies

A series of macrocyclic adducts of the 22- and 28-membered selenaaza macrocycles (1 and 2, respectively) with different counter anions such as halides, sulfate, perchlorate, phosphate, trifluoroacetate and nitrate has been prepared. The adducts have been characterized by elemental analysis, IR, ¹H NMR, ⁷⁷Se NMR and ESI-MS analysis. The ⁷⁷Se NMR spectrum of the adduct (7) shows an upfield shift compared to the parent macrocycle. The bromo (5), iodo (6), sulfate (7), trifluroacetate (10) adducts of the 22-membered selenaaza macrocycle and perchlorate (16), trifluroacetate (18) adducts of the 28-membered selenaaza macrocycle have been structurally characterized. The crystal structures show extensive hydrogen bonding networks. The molecular structures of all the compounds show the macrocycle to be fully protonated except the trifluroacetate adduct of the 22-membered macrocycle (10), which is only diprotonated. The binding constants of the neutral 22-membered selenaaza macrocycle towards, fluoride, bromide, iodide and sulfate ion have been determined by the NMR titration method.     

Preparation of a variety of macrocyclic Di- and tetraamides and their peraza-crown analogs using the crab-like cyclization reaction

Twelve new macrocyclic di- and tetraamides have been synthesized from the reaction of a bis(α-chloroamide) with a primary amine or with a diamine. Some of these cyclic di- and tetraamides contained pendant aminoalkyl groups attached on one or more ring nitrogen atoms. Two macrocyclic dithiadiamides were prepared from the reaction of a bis(α-chloroamide) and a dimercaptan. In every case, 12-, 14- and 15-membered cyclic di- and tetraamides were isolated in good yields. The 9-, 17- and 18-membered macrocycles were prepared in lower yields. Four of the amide-containing macrocycles were reduced by diborane to the perazacrown compounds.     

Macrocycles containing bicyclophosphorane moieties [1]

The first stable macrocycles, 12–15 , 16 , 18 , and 23 , containing pentacovalent phosphorus have been obtained by an Atherton–Todd reaction between the bis(hydridobicyclophosphoranes) 3–7 and the corresponding binucleophile HO (CH₂)₂ X (CH₂)₂ OH. The tricyclic monophosphoranes 8–11 as well as the noncyclic derivative 20 have also been isolated. A pathway that accounts for the formation of all these compounds is proposed. The X-ray crystal study of two 16-membered rings, 14 , 15 , confirms the diequatorial placement of the macrocyclic frame on the trigonal bipyramidal phosphorus which retains the most favorable axial-equatorial-axial annelation of the bicyclic moiety. Comparison of these two molecular structures points out the effect of the nature of X on the conformation of the macrocycle.     

Synthesis of New Multibenzo Oxygen–Sulfur Donor Macrocycles Containing Lactams at Room Temperature

Some new oxygen–sulfur, multibenzo macrocyclic ligands containing amide groups have been prepared using the macrocyclization process with the reaction of 2,2′-thiobis-[4-methyl(2-aminophenoxy)phenyl ether] as a symmetrical diamine with appropriate dicarboxylicacid dichlorides in moderate yields. This macrocyclization led to the formation of di- and tetramide macrocycles. These reactions were routinely carried out at ambient temperature in CH₂Cl₂ as solvent in high dilution without template effect conditions. It is found that sulfur the atom affects the rigidity of the macrocycles and diastereotopicity of nuclei in the ring of these series of macrocyclic compounds.     

Comparative study of [Xe]+ and [Ar]+ bombardment in secondary ion mass spectrometry for bioorganic compounds

Secondary ion mass spectra obtained by [Xe]⁺ bombardment are compared with those obtained by [Ar]⁺ bombardment. Although [Ar]⁺ ions are commonly used as primary ions in secondary ion mass spectrometry for organic compounds, [Xe]⁺ ions seem better as primary ions because they give a larger sputtering yield for a metal substrate than [Ar]⁺ ions. Cationized molecular intensities of sucrose, raffinose and stachyose, and quasimolecular ion intensities of tuftsin and eledoisin related peptide are investigated using [Xe]⁺ and [Ar]⁺ bombardments. The observed molecular species are 2–4 times more intense for [Xe]⁺ bombardment than for [Ar]⁺ bombardment, although the secondary ion mass spectra are almost the same in both cases.     

Copper(II) and nickel(II) complexes of binucleating macrocyclic bis(disulfide)tetramine ligands

Novel macrocyclic bis(disulfide)tetramine ligands and several Cu(II) and Ni(II) complexes of them with additional ligands have been synthesized by the oxidative coupling of linear tetradentate N2S2 tetramines with iodine. Facile demetalation of the Ni(II) oxidation products affords the free 20-membered macrocycles meso-9 and rac-9 and the 22-membered macrocycle 16, all of which are potentially octadentate N4S4 ligands. X-ray structure analyses reveal distinctly different conformations for the two isomers of 9; meso-9 shows a stepped conformation in profile with the disulfide groups corresponding to the rise of the step, whereas rac-9 exhibits a V conformation with the disulfide groups near the vertex of the V. No metal complexes of rac-9 have been isolated. Crystallographic studies of three Cu(II) complexes reveal that depending upon the size of the macrocyclic ligand and the nature of the additional ligands (I-, NCO-, and CH3CN), the Cu(II) coordination geometry shows considerable variation (plasticity), with substantial changes in the Cu(II)-disulfide bonding. Thus, a diiodide salt contains six-coordinate Cu(II) to which all four bridging disulfide sulfur atoms form strong equatorial bonds. In contrast, isocyanato complexes of the 20- and 22-membered macrocycles exhibit trigonal-bipyramidal Cu(II) and distorted cis-octahedral Cu(II) geometries, respectively, having only one and no short equatorially bound sulfur atoms. The coordination geometry of the latter complex can also be described as four-coordinate seesaw with two semicoordinated S(disulfide) ligands. Disulfide-->Cu(II) ligand-to-metal charge transfer absorptions of both isocyanato-containing Cu(II) species appear too weak to observe, probably because of poor overlap of the sulfur orbitals with the Cu(II) d-vacancy. The dual disulfide-bridged Ni(II) units of the crystallographically characterized octahedral Ni(II) complex of meso-9 with axial iodide and acetonitrile ligands promote substantial antiferromagnetic coupling (J = -13.0(2) cm-1).     

Reactivity of macroheterocycles with respect to sulfamic acid

It has been established, on the basis of the formation of a 1∶1∶1 inclusion compound of 18,19-benz-1,16-diaza-4,7,10,13-tetraoxoeicosa-17,20-dione with sulfamic acid and water from the interaction of 11–20-membered macrocyclic oxyethyleneamides of phthalic acid with sulfamic acid, that 18–20-membered oxyethylene macrocycles containing six oxygen donor atoms in the macrocycle are effective in the formation of “host-guest” complexes. Physicochemical Institute for the Preservation of the Environment and Mankind, Ministry of Education and Ukraine National Academy of Sciences of Ukraine, Odessa 270100. Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 11, pp. 1571–1573 November, 1997.     

Mass spectra of some partially fluorinated aliphatic compounds

The mass spectra of several fluorohydrocarbons are shown and discussed. The fragmentation of these compounds displays a close correlation with the molecular structure and points to the importance of the charge-stabilisation concept for the ion intensities. The iodo-derivatives show a large abundant molecular ion.     

Thiamacrocyclic lactones: new Ag(I)-ionophores

The syntheses of novel adamantane thialactones 5-12 are reported, and the results of the heavy- and transition-metal cation extraction experiments are described. The results are compared with those obtained with similar thiamacrocyclic ligands that have flexible chains of methylene groups incorporated into the macrocyclic framework as in 13-20. The results show that most of the hosts studied are very good in complexing the Ag(+) ion. The formation of complexes has also been demonstrated using NMR titration experiments for macrocycles 13 and 14 with AgTFA. Introduction of a single polycyclic molecule into the 15- to 18-membered rings increases the rigidity and preorganizes the ligand for complexation. However, two adamantane molecules embedded in the ring usually diminish the complexing ability of the ligand, primarily due to sterical effects of the bulky adamantane moiety that obstructs formation of an optimal geometry for binding the desired metal ion. The structures of macrocycles 5, 7, 9, 11, and 19 were determined by X-ray structure analysis, and their conformational properties are discussed. In the solid state, 7, 11, and 19 are organized into tubular fashion using C-H...O interactions. Also, two silver complexes with thialactone 13, Ag13 and Ag(13)(2), were prepared and characterized. The structure analysis of Ag13 and Ag(13)(2) reveals the formation of mononuclear and binuclear species with silver in ambivalent, tetrahedral coordination via sulfur and oxygen from trifluoroacetate anion.     

Mass-spectrometric identification of isomeric 1-benzoyl-2-azetidinones and 2-phenyl-4,5-dihydro-1,3-oxazin-6-ones

The mass spectra of isomeric 1-benzoyl-2-azetidinones and 2-phenyl-4,5-dihydro-1,3-oxazin-6-ones were analyzed. A more stable molecular ion and high intensities of the peaks of the ions formed from the molecular ion with the loss of ketene or a substituted ketene are characteristic for the former compounds, while low stability of the molecular ion and a higher probability of the loss of one of the groupings in the 4 position are characteristic for the latter compounds. Fragmentation schemes that are confirmed by the high-resolution mass spectra are presented.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 12, pp. 1627–1631, December, 1980.We sincerely thank E. Simova and C. Drey for providing us with samples of a number of the compounds.     

Prediction of electron ionization mass spectra of <Emphasis Type="Italic">О</Emphasis>-alkyl methylphosphonothionofluoridates

Electron ionization mass spectra of poorly studied toxic alkyl methylphosphonothionofluoridates and alkyl methylphosphonofluoridates are discussed. It is demonstrated that the compounds are decomposed in accordance with the general scheme of fragmentation of monofunctional organic compounds RX (X is a functional group), proposed previously. At the same time, noticeable differences between the corresponding mass spectra are found. The most important difference occurs in their alkene subspectra containing a peak of alkene ion [R–H]^+? and peaks of its decay products. A method was developed for the simulation of mass spectra of unknown alkyl methylphosphonothionofluoridates by transforming available mass spectra of their oxygen analogues.