D96N mutant bacteriorhodopsin immobilized in sol-gel glass characterization

The D96N mutant form of bacteriorhodopsin (BR) purple membrane fragments isolated from the bacteriumHalobacterium salinarium has been immobilized by entrapment in sol-gel glass. The protein was characterized for M state decay rate at different temperatures and pH values. Bleaching efficiency and absorbance maxima vs pH were also determined. The kinetic effects of triethanolamine and diethanolamine were also examined. Results indicated that the immobilized BR was affected in a manner similar to the mutant BR in aqueous suspension. Addition of guanidine, however, caused the immobilized BR to show kinetic parameters more closely related to the wild-type protein than the D96N mutant control. Samples of the aqueous suspension were characterized for particle size and particle size distribution. Dried samples of the immobilized BR were analyzed by field emission microscopy and BET to characterize both the purple membrane fragments and the sol-gel pore characteristics.     

Electric signals of light excited bacteriorhodopsin mutant D96N.

The study of mutant D96N played an important role in understanding proton translocation by light driven bacteriorhodopsin. Our measurement of photoelectric current for single and double flash illumination revealed new details of the photocycle of this mutant. With double flash excitation we found an intermediate absorbing near the wavelength of the ground state of bacteriorhodopsin (bR) but pumping in the opposite direction. This intermediate has the same lifetime as the species described by Zimányi et al. [Proc. Natl. Acad. Sci. USA 96 (1999) 4414-4419] and was assigned to early recovery of a fraction of the ground state after excitation. Because the electric response does not reconcile with that of the ground state, we tentatively assign it to the L intermediate or to an intermediate similar in absorption to bR (bR').     

Electric-field effects in dry films of D85N and D85,96N mutant bacteriorhodopsin

In the D85N mutant of the protein bacteriorhodopsin (BR), the Schiff base, by which the retinal chromophore is bound to the protein, exhibits an abnormally low proton affinity (pKa approximately 8.9). Recent experiments on thin films of this protein have shown that this causes the protonation state of the Schiff base, and thus the visible absorption spectrum, to be sensitive to external electric fields. In this paper, we explore the dependence of this effect on parameters such as pH, humidity, and film thickness. The results of these experiments point to the importance of water molecules bound in the acceptor part of the proton channel as sources and donors in field-induced proton-transfer reactions. We describe additional results obtained with the D85,96N mutant, which also exhibits a low Schiff-base pK. The similar behavior of the two mutants under applied electric fields at high pH implies that the residue Asp-96 plays no role in field-induced Schiff-base protonation.     

The surface oxidation potential of melanosomes measured by free electron laser-photoelectron emission microscopy

A technique for measuring the photoionization spectrum and the photoelectron emission threshold of a microscopic structured material is presented. The theoretical underpinning of the experiment and the accuracy of the measurements are discussed. The technique is applied to titanium silicide nanostructures and melanosomes isolated from human hair, human and bovine retinal pigment epithelium cells, and the ink sac of Sepia officinalis. A common photothreshold of 4.5 +/- 0.2 eV is found for this set of melanosomes and is attributed to the photoionization of the eumelanin pigment. The relationship between the photoionization threshold and the electrochemical potential referenced to the normal hydrogen electrode is used to quantify the surface oxidation potential of the melanosome. The developed technique is used to examine the effect of iron chelation on the surface oxidation potential of Sepia melanosomes. The surface oxidation potential is insensitive to bound Fe(III) up to saturation, suggesting that the metal is bound to the interior of the granule. This result is discussed in relation to the age-dependent accumulation of iron in human melanosomes in both the eye and brain.     

Numerical analysis of Debye screening effect in electrode surface potential mapping by scanning electrochemical potential microscopy

We investigate the effects of the probe apex geometry, overlap of the electric double layers (EDLs) and Debye screening on surface potential mapping with scanning electrochemical potential microscopy (SECPM). The simulation consists of scanning a tip parallel to the electrode surface over a charged hemispherical nano-particle adsorbed on the electrode surface. As expected, a clear dependence of the apparent size of the imaged particle on the probe apex geometry has been noticed. The Debye screening has a significant effect on the probe sensitivity, while the electrolyte concentration affects the observed size of the imaged particles.     

Electron transfer at self-assembled monolayers measured by scanning electrochemical microscopy

New approaches have been developed for measuring the rates of electron transfer (ET) across self-assembled molecular monolayers by scanning electrochemical microscopy (SECM). The developed models can be used to independently measure the rates of ET mediated by monolayer-attached redox moieties and direct ET through the film as well as the rate of a bimolecular ET reaction between the attached and dissolved redox species. By using a high concentration of redox mediator in solution, very fast heterogeneous (10(8) s(-1)) and bimolecular (10(11) mol(-1) cm(3) s(-1)) ET rate constants can be measured. The ET rate constants measured for ferrocene/alkanethiol on gold were in agreement with previously published data. The rates of bimolecular heterogeneous electron transfer between the monolayer-bound ferrocene and water-soluble redox species were measured. SECM was also used to measure the rate of ET through nonelectroactive alkanethiol molecules between substrate gold electrodes and a redox probe (Ru(NH(3))(6)(3+)) freely diffusing in the solution, yielding a tunneling decay constant, beta, of 1.0 per methylene group.     

4D scanning ultrafast electron microscopy: visualization of materials surface dynamics

The continuous electron beam of conventional scanning electron microscopes (SEM) limits the temporal resolution required for the study of ultrafast dynamics of materials surfaces. Here, we report the development of scanning ultrafast electron microscopy (S-UEM) as a time-resolved method with resolutions in both space and time. The approach is demonstrated in the investigation of the dynamics of semiconducting and metallic materials visualized using secondary-electron images and backscattering electron diffraction patterns. For probing, the electron packet was photogenerated from the sharp field-emitter tip of the microscope with a very low number of electrons in order to suppress space-charge repulsion between electrons and reach the ultrashort temporal resolution, an improvement of orders of magnitude when compared to the traditional beam-blanking method. Moreover, the spatial resolution of SEM is maintained, thus enabling spatiotemporal visualization of surface dynamics following the initiation of change by femtosecond heating or excitation. We discuss capabilities and potential applications of S-UEM in materials and biological science.     

Probing cell surface charge by scanning electrode potential

A static mercury electrode was used for measurement of double-layer charge displacement signals caused by living plant cells of the unicellular marine alga Dunaliella tertiolecta. By scanning the electrode potential a point is reached where the charge density of a plant cell compensates the electrode charge density. The experimentally determined values of surface charges for unicellular marine alga Dunaliella tertiolecta cells are -0.63 and -0.75 nuC/cm(2) in 0.1 M NaCl and 1 M NaCl solutions, respectively.     

Investigations of local electrical surface characteristics by dynamical scanning force microscopy

A technique is presented that allows to obtain information about sample surface topography and local electrical surface properties simultaneously. A scanning electrical force microscope is used for that purpose which is based on an atomic force microscope (AFM) working in the dynamical mode. Different information channels contained in the cantilever excitation spectrum are separated by a lock-in technique. The physical content of the technique is discussed in detail and the influence of surface topography on the non-topographic imaging is demonstrated. Finally, the real advantages of cross-sectional sample preparation (as known from electron microscopy) for this kind of scanning probe microscopy with respect to various applications is presented.     

Reorientational Motions of the D96N and T46V/D96N Mutants of Bacteriorhodopsin in the Purple Membrane

Abstract— The reorientational motions of the D96N and T46V/D96N mutants of bacteriorhodopsin in purple membrane have been investigated by time-resolved linear dichroism measurements. The reorientations in the early stages of the photocycle are identical to those observed in wild-type bacteriorhodopsin: anisotropics of photocycle intermediates in both D96N and T46V/D96N are r_K= 0.38±0.01, r_L= 0.35±0.01, r_M= 0.35±0.01. The anisotropy of the initial state, r_BR, exhibits decays to zero in D96N and to negative values in T46V/D96N on the time scale of tens of milliseconds. This anisotropy decay can be explained by a model that involves the motion of unexcited or spectator proteins adjacent to a photocycling protein. The amplitude and time constants of spectator reorientational motion are similar to those that have been observed in the wild type. Contributions from the anisotropy of the N-state were detected in measurements of the T46V/D96N mutant, in which a large N-state population accumulates. The value of r_N is estimated to be 0.30±0.05 in T46V/D96N.     

Room temperature spontaneous surface condensation of boronic acids observed by scanning tunneling microscopy

Herein, we discovered that the surface-confined condensation of boronic acid can happen spontaneously at room temperature, by comparing the kinetics of condensation of boronic acids with and without the negative sample bias, we found that the negative sample bias indeed accelerates the self-condensation reaction of boronic acid. Combining with in-situ STM images and ultraviolet photoemission spectrum (UPS) analysis, a reversible adsorption mechanism model was proposed and reasonably explains the reversible electric-field-induced phase transformation.     

表面分子手性识别与组装结构的STM研究

表面手性现象是物理化学科学研究的重要内容之一,研究表面手性现象,将有助于对分子吸附,分子间相互作用,多相手性催化,手性分离与拆分等科学和实际应用问题的深入理解.在表面手性现象和手性结构的研究中,扫描隧道显微技术（STM）发挥着重要作用,成为研究表面手性现象的重要手段.该综述文章以本课题组近年已发表的研究工作为主,重点介绍利用STM研究固体表面分子吸附组装体系中关于手性问题的部分结果,包括固有手性分子在固体表面的吸附,非手性分子组装形成手性结构,以及表面手性结构的转化和调控.还结合实验结果分析探讨了表面手性的结构形成、放大和传递等,展望了该研究领域的发展趋势.     

Transport of redox probes through single pores measured by scanning electrochemical-scanning ion conductance microscopy (SECM-SICM)

We report scanning electrochemical microscopy-scanning ion conductance microscopy (SECM-SICM) experiments that describe transport of redox active molecules which emanate from single pores of a track-etch membrane. Experiments are performed with electrodes which consist of a thin gold layer deposited on one side of a nanopipet. Subsequent insulation of the electrode with parylene results in a hybrid electrode for SECM-SICM measurements. Electrode fabrication is straightforward and highly parallel. For image collection, ionic current measured at the nanopipet both controls the position of the electrode with respect to the membrane surface and reports the local conductance in the vicinity of the nanopipet, while faradaic current measured at the Au electrode reports the presence of redox-active molecules. Application of a transmembrane potential difference affords additional control over migration of charged species across the membrane.     

Measuring surface topography with scanning electron microscopy. I. EZEImage: a program to obtain 3D surface data.

Scanning electron microscopy (SEM) is widely used in the science of materials and different parameters were developed to characterize the surface roughness. In a previous work, we studied the surface topography with fractal dimension at low scale and two parameters at high scale by using the variogram, that is, variance vs. step log-log graph, of a SEM image. Those studies were carried out with the FERImage program, previously developed by us. To verify the previously accepted hypothesis by working with only an image, it is indispensable to have reliable three-dimensional (3D) surface data. In this work, a new program (EZEImage) to characterize 3D surface topography in SEM has been developed. It uses fast cross correlation and dynamic programming to obtain reliable dense height maps in a few seconds which can be displayed as an image where each gray level represents a height value. This image can be used for the FERImage program or any other software to obtain surface topography characteristics. EZEImage also generates anaglyph images as well as characterizes 3D surface topography by means of a parameter set to describe amplitude properties and three functional indices for characterizing bearing and fluid properties.     

Changes in the surface structure of purple membrane upon illumination measured by atomic force microscopy

Bacteriorhodopsin (BR) patches with a diameter of 1 to 3 μm were investigated in their native state by atomic force microscopy (AFM) in buffer solution. The patches were immobilized deposited and investigated on mica in 150 mM KCl and 10 mM Tris-buffer at pH 8. Under this buffer condition they adsorb preferred with their extracellular side to the solid support mica. The structure of the two-dimensional light adapted crystals was resolved with an imaging force of about 100 pN up to a resolution of 13 Å. The topography of the surface gets smoother if an imaging force of 1000 pN was applied indicating that protruding structures are compressed. Upon illumination with white light, during imaging with a force of 200 pN, the surface structure of the BR lattice changed. The force- and light-induced structural changes were reversible.     

Dynamics change of phoborhodopsin and transducer by activation: study using D75N mutant of the receptor by site-directed solid-state 13C NMR

Pharaonis phoborhodopsin (ppR or sensory rhodopsin II) is a negative phototaxis receptor of Natronomonas pharaonis, and forms a complex, which transmits the photosignal into cytoplasm, with its cognate transducer (pHtrII). We examined a possible local dynamics change of ppR and its D75N mutant complexed with pHtrII, using solid-state (13)C NMR of [3-(13)C]Ala- and [1-(13)C]Val-labeled preparations. We distinguished Ala C(beta) (13)C signals of relatively static stem (Ala221) in the C-terminus of the receptors from those of flexible tip (Ala228, 234, 236 and 238), utilizing a mutant with truncated C-terminus. The local fluctuation frequency at the C-terminal tip was appreciably decreased when ppR was bound to pHtrII, while it was increased when D75N, that mimics the signaling state because of disrupted salt bridge between C and G helices prerequisite for the signal transfer, was bound to pHtrII. This signal change may be considered with the larger dissociation constant of the complex between pHtrII and M-state of ppR. At the same time, it turned out that fluctuation frequency of cytoplasmic portion of pHtrII is lowered when ppR is replaced by D75N in the complex with pHtrII. This means that the C-terminal tip partly participates in binding with the linker region of pHtrII in the dark, but this portion might be released at the signaling state leading to mutual association of the two transducers in the cytoplasmic regions within the ppR/pHtrII complex.     

Correlation between desorption force measured by atomic force microscopy and adsorption free energy measured by surface plasmon resonance spectroscopy for peptide-surface interactions

Surface plasmon resonance (SPR) spectroscopy is a useful technique for thermodynamically characterizing peptide-surface interactions; however, its usefulness is limited to the types of surfaces that can readily be formed as thin layers on the nanometer scale on metallic biosensor substrates. Atomic force microscopy (AFM), on the other hand, can be used with any microscopically flat surface, thus making it more versatile for studying peptide-surface interactions. AFM, however, has the drawback of data interpretation due to questions regarding peptide-to-probe-tip density. This problem could be overcome if results from a standardized AFM method could be correlated with SPR results for a similar set of peptide-surface interactions so that AFM studies using the standardized method could be extended to characterize peptide-surface interactions for surfaces that are not amenable for characterization by SPR. In this article, we present the development and application of an AFM method to measure adsorption forces for host-guest peptides sequence on surfaces consisting of alkanethiol self-assembled monolayers (SAMs) with different functionality. The results from these studies show that a linear correlation exists between these data and the adsorption free energy (ΔG(o)(ads)) values associated with a similar set of peptide-surface systems available from SPR measurements. These methods will be extremely useful to characterize thermodynamically the adsorption behavior for peptides on a much broader range of surfaces than can be used with SPR to provide information related to understanding protein adsorption behavior to these surfaces and to provide an experimental database that can be used for the evaluation, modification, and validation of force field parameters that are needed to represent protein adsorption behavior accurately for molecular simulations.