Synthesis of 4,4-disubstituted piperidine analogs of (±)-cis-N-[1-(2-hydroxy-2-phenylethyl)-3-methyl-4-piperidyl]-N-phenylpropanamide

Condensation of (±)-1-benzyl-3-methyl-4-piperidone ( 1 ) with aniline followed by trapping of the intermediate imine with cyanide generated a mixture of isomeric nitriles 2A and 2B , the structures of which were established unambiguously by obtaining an X-ray crystal structure on nitrile 2B . Subsequent elaboration of the nitrile intermediates provided analogs of (±)-cis-N-[1-(2-hydroxy-2-phenylethyl)-3-methyl-4-piperidyl]-N-phenylpropanamide having a second substituent (carbomethoxyl, carboethoxyl, methoxymethyl) at the piper-idine 4-position. The conversion of the carboxamide intermediates 3A and 3B to the carboalkoxyl intermediates 5A, 5B and 6A was accomplished utilizing a modified esterification procedure. Proton nmr data are presented for both the final products and the key synthetic intermediates.     

Query generation to search for inhibitors of enzymatic reactions

A method for the generation of intermediates of enzyme-catalyzed reactions is presented. These intermediates can be used as three-dimensional structural queries for searching for inhibitors of enzymatic reactions. The intermediates can be considered as being structurally quite close to transition-state analogues. For this application, a database containing detailed chemical information on metabolic reactions is used. The likely three-dimensional structure of the intermediates of enzyme-catalyzed reactions can be generated from the information in the database. For three reactions catalyzed by the enzymes AMP deaminase (EC code 3.5.4.6), triose phosphate isomerase (EC code 5.3.1.1), and arginase II (EC code 3.5.3.1), we show how a 3D model of these intermediates can be superimposed onto known inhibitors of these enzymes by a program that uses a genetic algorithm. For this, we test different methods for the superimposition using information on the enzymatic binding site, using information on physicochemical properties calculated from the molecular structure, or without having any information in the superimposition process. We show that these inhibitors are most similar to the corresponding intermediates regarding the 3D structure.     

Rearrangement of 3-membered 1,1,2-trifluorobromonium and iodonium ions and comparison of trifluorochloronium to fluorocarbenium ions

Reactions of chlorine (Cl(2)) with 4-halo-1,1,2-trifluorobut-1-enes (1, 2, or 3) give open-ion intermediates A and E that are in equilibrium. The open-chloronium ions (E) rearrange to a five-membered-ring halonium ion during ionic chlorination of 3 when the number-4 halo-substituent is iodine. Three-membered-ring bromonium and iodonium ions from alkenes 1, 2, or 3 are rather symmetrical and similar in structure. Quantum chemical calculations show that five-membered-ring halonium ion intermediates are 11 to 27 kcal/mol more stable than the three-membered-ring halonium ions or the open-ions A and E. The five-membered-ring intermediates lead to rearranged products. Rearranged products increase as the number-4 halogen (Z) becomes more nucleophilic (Z: Cl < Br < I). Open chloronium ions from ionic chlorination of terminal fluorovinyl alkenes are compared to the open ions generated by protons to similar alkenes.     

Synthesis of 5'-terminal capped oligonucleotides using O-N phosphoryl migration of phosphoramidite derivatives

Trivalent phosphoramidite derivatives could be readily converted by reacting with 1-hydroxy-7-azabenzotriazole to phosphotriester intermediates; these intermediates reacted smoothly with phosphorylated compounds to give pyrophosphate derivatives. This new phosphorylation approach enabled a facile and rapid synthesis of 5'-adenylated DNA oligomers (A(5')ppDNA) on resins using a silyl-type linker. Our new approach could be applied to the synthesis of a 2'-OMe-RNA oligomer containing the 5'-terminal 2,2,7-trimethylguanosine cap structure.     

Complexity index for the linear mechanisms of chemical reactions

A complexity measure is proposed for the kinetic models of chemical reactions with linear mechanisms. The index is related to the structure of fractional-rational kinetic laws for chemical reactions, as well as to the structure of cyclic graphs used to describe them. The complexity index is shown to be closely related to the detailed hierarchical classification and to the code of linear reaction mechanisms, recently introduced. A number of index properties are proved for two- and three-reaction routes. They reflect the influence of the various classification criteria, such as the number of reaction routes and intermediates, the type, class and subclasses of the mechanism, and the number of intermediates in each reaction route. Hierarchical levels of mechanisms with the same complexity (isocomplex mechanisms) are specified. Standard tables are presented with complexity indices for all topologically distinct linear reaction mechanisms having one to three reaction routes, two to six intermediates, and reversible elementary steps.[/p]     

Microwave-assisted rapid photocatalytic degradation of malachite green in TiO2 suspensions: mechanism and pathways

Microwave-assisted photocatalytic (MPC) degradation of malachite green (MG) in aqueous TiO2 suspensions was investigated. A 20 mg/L sample of MG was rapidly and completely decomposed in 3 min with the corresponding TOC removal efficiency of about 85%. To gain insight into the degradation mechanism, both GC-MS and LC-ESI-MS/MS techniques were employed to identify the major intermediates of MG degradation, including N-demethylation intermediates [(p-dimethylaminophenyl)(p-methylaminophenyl)phenylmethylium (DM-PM), (p-methylaminophenyl)(p-methylaminophenyl)phenylmethylium (MM-PM), (p-methylaminophenyl)(p-aminophenyl)phenylmethylium (M-PM)]; a decomposition compound of the conjugated structure (4-dimethylaminobenzophenone (DLBP)); products resulting from the adduct reaction of hydroxyl radical; products of benzene removal; and other open-ring intermediates such as phenol, terephthalic acid, adipic acid, benzoic acid, etc. The possible degradation mechanism of MG included five processes: the N-demethylation process, adduct products of the hydroxyl radical, the breakdown of chromophores such as destruction of the conjugated structure intermediate, removal of benzene, and an open-ring reaction. To the best of our knowledge, it is the first time the whole MG photodegradation processes have been reported.     

Thermal Electronic Excitation of Perfluoroolefins

The electronic structure of the known intermediates of perfluoroolefins was analyzed from the standpoint of thermal electronic excitations. The calculated (ab initioDZ) energies of the perpendicular triplet state T₁ of the perfluorolefins are compared with the experimental enthalpies of formation of the intermediates. A new mechanism of cyclodimerization of tetrafluoroethylene is proposed, including its thermal excitation into the lowest triplet state as the limiting stage.     

Ni(0)-promoted hydroxycarboxylation of 1,2-dienes by reaction with CO2 and O2

[structure: see text]. A novel method for the preparation of hydroxy carboxylic acid derivatives has been developed by O2-oxidation of pi-allylnickel intermediates generated by Ni(0)-mediated coupling of 1,2-dienes with CO2.     

The taxadiene-forming carbocation cascade

A complete pathway (structures and energies of intermediates and transition state structures connecting them) from geranylgeranyl diphosphate to taxadiene, obtained using quantum chemical calculations, is described. This pathway is fully consistent with previous labeling experiments, despite differing in several subtle ways (in terms of conformations of certain carbocation intermediates and in the concertedness and synchronicity of certain bond-forming events) from previous mechanistic proposals. Also, on the basis of the theoretical results, it is proposed that the 2-fluoro-geranylgeranyl diphosphate substrate analogue in the recently reported X-ray crystal structure of taxadiene synthase is bound in a nonproductive orientation.     

Mechanistic studies on the nucleophilic reaction of porphyrins with organolithium reagents.

Porphyrins react readily with organolithium reagents under substitution of free meso positions. As this method has proven to be very versatile for the preparation of a wide range of meso substituted porphyrins, a mechanistic study of the reaction was undertaken using 5,15-diaryl- and dialkyl substituted porphyrins, 2,3,7,8,12,13,17,18-octaethylporphyrin, and the respective nickel(II) complexes. A combination of deuteration experiments, electronic absorption spectroscopy of the reactive intermediates, trapping of intermediates with organic electrophiles, and reaction at different pH values showed significant differences in the reaction pathways of free base porphyrins and metalloporphyrins. In both cases the reaction proceeds initially under formation of phlorin like intermediates which are stable in water. For the Ni(II)phlorins a mesomeric carbanionic form with a highly distorted structure exists that can react as a nucleophile with electrophiles such as RI, H+, or D+. In the latter case a protonation-deprotonation equilibrium involving porphodimethen intermediates has to be assumed. Free base phlorins do not react as nucleophiles but can undergo H/D exchange reactions in strongly acidic media.     

Thermal decomposition of poly(vinyl chloride) and chlorinated poly(vinyl chloride). II. Organic analysis

A concerted study of poly(vinyl chloride), chlorinated poly(vinyl chloride), and poly(vinylidene chloride) polymers by spectroscopy, thermal analysis, and pyrolysis-gas chromatography resulted in a proposed mechanism for their thermal degradation. Polymer structure with respect to total chlorine content and position was determined, and the influence of these polymer units on certain of the decomposition parameters is presented. Distinguishing differences were obtained for the kinetics of decomposition, reactive macroradical intermediates, and pyrolysis product distributions for these systems. It was determined that chlorinated poly(vinyl chloride) systems with long-chain ? CHCI? units were more thermally stable than the unchlorinated precursor, exhibited increasing activation energy for the dehydrochlorination, and produced chlorine-containing macroradical intermediates and chlorinated aromatic pyrolysis products. The poly(vinyl chloride) polymer was relatively less thermally stable, exhibited decreasing activation energy during dehydrochlorination, and produced polyenyl macro-radical intermediates and aromatic pyrolysis products.     

Formation of transient intermediates in low-temperature photosensitized oxidation of an 8-(13)C-guanosine derivative

An 8-(13)C-labeled guanosine derivative, 2',3',5'-O-tert-butyldimethylsilyl-N-tert-butyldimethylsilyl-8-(13)C-guanosine, was synthesized and its photosensitized oxidation with singlet oxygen carried out below -100 degrees C. Two transient intermediates that decompose directly to the final major product 5 and CO(2) were detected by (13)C NMR between -100 and -43 degrees C. The two intermediates are carbamic acids based on (13)C NMR and 2D NMR (HMQC, HMBC) spectra and the formation of final product 5 and of 8-CO(2). No endoperoxide intermediate could be detected by low-temperature NMR spectroscopy even at -100 degrees C. A reaction mechanism is proposed involving initial [4 + 2] cycloaddition of singlet oxygen to the imidazole ring to form an unstable endoperoxide, subsequent rearrangement of the endoperoxide to a dioxirane, and decomposition of the dioxirane to the two observed intermediates. Both oxygen atoms of CO(2) are derived from a single oxygen molecule, which strongly supports a dioxirane structure for the precursor of the two observed intermediates. The distribution of products estimated by (13)C NMR accounts for all the (13)C-containing products in the reaction mixture.     

含苯并噻唑基的硫桥杯芳烃衍生物的合成及结构

在碳酸钾存在下, 对叔丁基硫桥杯芳烃(1)分别与端基二溴代烷和碘甲烷反应, 生成硫桥杯芳烃衍生物2 和3, 它们分别与过量的2-巯基苯并噻唑在碳酸钾存在下反应, 生成含苯并噻唑基的硫桥杯芳烃衍生物5a～5d. 通过 1H NMR, 13C NMR, IR, MS和元素分析等手段对产物进行了表征. 同时, 采用X射线衍射分析确定了硫桥杯芳烃5b的晶体结构.     

The reactant state for substrate-activated turnover of acetylthiocholine by butyrylcholinesterase is a tetrahedral intermediate

Secondary beta-deuterium kinetic isotope effects have been measured as a function of substrate concentration for recombinant human butyrylcholinesterase-catalyzed hydrolysis of acetyl-L3-thiocholine (L = 1H or 2H). The isotope effect on V/K is inverse, D3V/K = 0.93 +/- 0.03, which is consistent with conversion of the sp2 hybridized carbonyl carbon of the scissile ester bond of the E + A reactant state to a quasi-tetrahedral structure in the acylation transition state. In contrast, the isotope effect on Vmax under conditions of substrate activation is markedly normal, D3(betaVmax) = 1.29 +/- 0.06, an observation that is consistent with accumulation of a tetrahedral intermediate as the reactant state for catalytic turnover. Generally, tetrahedral intermediates for nonenzymatic ester hydrolyses are high-energy steady-state intermediates. Apparently, butyrylcholinesterase displays an unusual ability to stabilize such intermediates. Hence, the catalytic power of cholinesterases can largely be understood in terms of their ability to stabilize tetrahedral intermediates in the multistep reaction mechanism.     

The transacetalization reaction during the etherification of poly(oxymethylene)diol [α-hydro-ω-hydroxypoly(oxymethylene)] with orthoesters in the presence of lewis acids

A transacetalization reaction occurs during the etherification of poly(oxymethylene)diol [α-hydro-ω-hydroxypoly(oxymethylene)] with orthoesters and an important modification of molecular structure takes place. The intermediates formed during the transacetalization reaction are emphasized. The connection between this reaction and the other reactions during the etherification of poly(oxymethylene)diols is discussed.     

The biosynthesis of teicoplanin-type glycopeptide antibiotics: assignment of p450 mono-oxygenases to side chain cyclizations of glycopeptide a47934

Streptomyces toyocaensis produces A47934, a teicoplanin-like type-IV glycopeptide with antibiotic activity against methicillin-resistant Staphylococcus aureus. A47934 differs from the type-I vancomycin glycopeptides, which possess a tricyclic peptide backbone, by the presence of an additional ring closure between the aromatic amino acids 1 and 3. To elucidate the order of crosslinking reactions, P450 mono-oxygenase-inactivation mutants (DeltastaF, DeltastaG, DeltastaH, and DeltastaJ) of the A47934 producer were generated, and the accumulated intermediates were analyzed. Thus, the formation of each crosslink could unambiguously be assigned to a specific oxygenase. The structure of the released intermediates from the wild-type nonribosomal peptide synthetase assembly line facilitated the determination of the cyclization order. Unexpectedly, the additional ring closure in A47934, catalyzed by StaG, is the second oxygenase reaction.     

Zum Mechanismus der Imidazol-Katalyse der Cyclo-trimerisation und cis-trans Umlagerung von Maleinsäure-Derivaten

A plausible explanation of the reaction mechanism is given based on addition intermediates with zwitter ion structure.     

The optical intermediates of the low-temperature photopolymerization of TSHO diacetylene crystals

Information about the mechanism of the solid-state photoreaction in bis(p-toluene sulphonate) ester of 2,4-hexadiyne-1,6-diol (TSHD) is deduced from optical spectra. The photoinduced generation and decay kinetics and the structure of the short-chain singlet intermediates (optical intermediates) observed in the optical absorption spectra during the low-temperature photoreaction are discussed.     

Toward the synthesis of reidispongiolide a: stereocontrolled synthesis of the C17-C22 and C23-C35 degradation fragments

[structure: see text] By relying on the asymmetric aldol reactions of chiral ketones, a highly stereocontrolled synthesis of each of the C(17)-C(22) and C(23)-C(35) degradation fragments of reidispongiolide A has been achieved. This permits a configurational assignment of the complete C(17)-C(36) region of this antimitotic macrolide, along with providing advanced intermediates for a projected total synthesis.     

On the origin of regio- and stereoselectivity in the rhodium-catalyzed vinylarenes hydroboration reaction

We studied the hydroboration of vinylarenes using rhodium complexes bearing atropoisomeric ligands. For the first time, an NMR spectroscopy study of the styrene and catecholborane addition to the precursor of catalyst [Rh(COD)(L-L)]BF(4), where L-L = (R)-BINAP and (R)-QUINAP, showed evidence of the structure of intermediates involved in the catalytic cycle. On the basis of this evidence, and using DFT calculations and QM/MM strategies, we investigated the origin of regio- and stereoselectivity. We determined the structure and stability of the key intermediates for several ligands and substrates and found excellent agreement between the relative stability of the intermediates and the experimentally observed trends. Using model systems, we analyzed the role of the steric and electronic features of the ligands and the substrates in detail.