Spectroscopic elucidation (FT-IR,FT-Raman and UV-visible) with NBO,NLO, ELF,LOL, drug likeness and molecular docking analysis on 1-(2-ethylsulfonylethyl)-2-methyl-5-nitro-imidazole: An antiprotozoal agent

1-(2-ethylsulfonylethyl)-2-methyl-5-nitro-imidazole (1EMI) C₈H₁₃N₃O₄S also known as Tinidazole, selected for its antiprotozoal property is extensively used for spectroscopic elucidations and computational aspects using density functional methods. Along with spectral conclusions, further investigations on fundamental reactive properties such as electrical, optical, nonlinear combined with DFT simulations were performed. Molecular docking procedure supports the results of chosen appropriate antiprotozoal agent based on ligand-protein interactions. Experimental and simulated (B3LYP/6-311++G (d,p)) IR and Raman spectra showed concurrence. NLO analysis through first order hyperpolarizability parameter helps in finding the potential of 1EMI as a good NLO candidate. Charge delocalization and the stability of the compound were discussed using natural bond orbital (NBO) analysis. Furthermore, Electron localization function (ELF), local orbital locator (LOL), and Frontier molecular orbitals (FMO) were studied. Besides, Mulliken population analysis on atomic charges, Energy gap, chemical potential, global hardness, softness, ionization potential, electronegativity, electrophilicity index along thermodynamic parameters (enthalpy, entropy and heat capacity) have been calculated. Drug likeness parameters and molecular docking approach enabled to check pharmaceutical potential and biological activity of 1EMI. The biological activity of 1EMI through ligand and protein interactions have been confirmed theoretically for the treatment of Malaria, Invasive aspergillosis and Mycobacterium tuberculosis with respect to chosen proteins. Three different activity targets and protein interactions are quite successful revealing the bond distances, intermolecular energy, binding energy and inhibition constant. 2D interaction profile image of the two maximum interacted proteins and also Ramachandran plot used to show stereochemistry of selected protein. The activities of 1EMI were studied in accordance with literature survey and the results were presented.     

Complexation of C60 Fullerene with Aromatic Drugs

The contributions of various physical factors to the energetics of complexation of aromatic drug molecules with C₆₀ fullerene are investigated in terms of the calculated magnitudes of equilibrium complexation constants and the components of the net Gibbs free energy. Models of complexation are developed taking into account the polydisperse nature of fullerene solutions in terms of the continuous or discrete (fractal) aggregation of C₆₀ molecules. Analysis of the energetics has shown that stabilization of the ligand–fullerene complexes in aqueous solution is mainly determined by intermolecular van der Waals interactions and, to lesser extent, by hydrophobic interactions. The results provide a physicochemical basis for a potentially new biotechnological application of fullerenes as modulators of biological activity of aromatic drugs.     

Water-soluble fullerenes using solubilizing agents, and their applications

Host–guest and supramolecular chemistry can produce water-solubilization of fullerenes such as C₆₀, C₇₀, and C_60/70 derivatives by hydrophobic interactions, CH–π interactions, and/or π–π interactions. For materials and biomedical applications, these water-soluble host–fullerene complexes must have the following important properties: (i) high solubility, (ii) high stability, and (iii) functionalization of the host–fullerene complex. These objectives can be achieved by selection of appropriate host molecules, development of novel solubilizing methods, and synthesis of functionalized host molecules. This review describes the introduction of a variety of host molecules that can solubilize fullerenes in water. In addition, we describe applications of host–fullerene complexes, in particular using photoinduced energy- and electron-transfer processes in water.     

Electronic structure of the complexes of fullerene C60 with polyaromatic molecules

Electronic structure of the complexes of fullerene C₆₀ with triphenylene (TP) and 9,10-diphenylantracene (DPA) has been studied by an X-ray fluorescent spectroscopy. The C Kα spectrum of a complex was shown to be almost an additive sum of the C Kα spectra measured for fullerene and organic ligand. The quantum-chemical calculation of a DPA·C₆₀ structural unit using density functional theory (DFT) revealed a slight charge transfer from DPA molecule to the C₆₀ cage. The intermolecular interaction in the complex was found to proceed through quit energy deep molecular orbitals.     

GalaxyTongDock: Symmetric and asymmetric ab initio protein–protein docking web server with improved energy parameters

Protein–protein docking methods are spotlighted for their roles in providing insights into protein–protein interactions in the absence of full structural information by experiment. GalaxyTongDock is an ab initio protein–protein docking web server that performs rigid-body docking just like ZDOCK but with improved energy parameters. The energy parameters were trained by iterative docking and parameter search so that more native-like structures are selected as top rankers. GalaxyTongDock performs asymmetric docking of two different proteins (GalaxyTongDock_A) and symmetric docking of homo-oligomeric proteins with C_n and D_n symmetries (GalaxyTongDock_C and GalaxyTongDock_D). Performance tests on an unbound docking benchmark set for asymmetric docking and a model docking benchmark set for symmetric docking showed that GalaxyTongDock is better or comparable to other state-of-the-art methods. Experimental and/or evolutionary information on binding interfaces can be easily incorporated by using block and interface options. GalaxyTongDock web server is freely available at http://galaxy.seoklab.org/tongdock . © 2019 Wiley Periodicals, Inc.     

Analyzing the adsorption of blood plasma components by means of fullerene-containing silica gels and NMR spectroscopy in solids

The results from studying the adsorption of blood plasma components (e.g., protein, triglycerides, cholesterol, and lipoproteins of low and high density) using silica gels modified with fullerene molecules (in the form of C₆₀ or the hydroxylated form of C₆₀(OH) _x ) and subjected to hydration (or, alternatively, dehydration) are presented. The conditions for preparing adsorbents that allow us to control the adsorption capacity of silica gel and the selectivity of adsorption toward the components of blood plasma, are revealed. The nature and strength of the interactions of the introduced components (fullerene molecules and water) with functional groups on the silica surface are studied by means of solid state NMR spectroscopy (NMR-SS). Conclusions regarding the nature of the centers that control adsorption are drawn on the basis of NMR-SS spectra in combination with direct measurements of adsorption. The interaction of the oxygen of the hydroxyl group of silica gel with fullerene, leading to the formation of electron-donor complexes of C₆₀-H, C₆₀-OH, or C₆₀-OSi type, is demonstrated by the observed changes in the NMR-SS spectra of silica gels in the presence of fullerene.     

Computational Studies on Non‐covalent Interactions of Carbon and Boron Fullerenes with Graphene

First‐principles DFT calculations are carried out to study the changes in structures and electronic properties of two‐dimensional single‐layer graphene in the presence of non‐covalent interactions induced by carbon and boron fullerenes (C₆₀, C₇₀, C₈₀ and B₈₀). Our study shows that larger carbon fullerene interacts more strongly than the smaller fullerene, and boron fullerene interacts more strongly than that of its carbon analogue with the same nuclearity. We find that van der Waals interactions play a major role in governing non‐covalent interactions between the adsorbed fullerenes and graphene. Moreover, a greater extent of van der Waals interactions found for the larger fullerenes, C₈₀ and B₈₀, relative to smaller C₆₀, and consequently, results in higher stabilisation. We find a small amount of electron transfer from graphene to fullerene, which gives rise to a hole‐doped material. We also find changes in the graphene electronic band structures in the presence of these surface‐decorated fullerenes. The Dirac cone picture, such as that found in pristine graphene, is significantly modified due to the re‐hybridisation of graphene carbon orbitals with fullerenes orbitals near the Fermi energy. However, all of the composites exhibit perfect conducting behaviour. The simulated absorption spectra for all of the graphene–fullerene hybrids do not exhibit a significant change in the absorption peak positions with respect to the pristine graphene absorption spectrum. Additionally, we find that the hole‐transfer integral between graphene and C₆₀ is larger than the electron‐transfer integrals and the extent of these transfer integrals can be significantly tuned by graphene edge functionalisation with carboxylic acid groups. Our understanding of the non‐covalent functionalisation of graphene with various fullerenes would promote experimentalists to explore these systems, for their possible applications in electronic and opto‐electronic devices.     

Star-shaped polymers with the fullerene C60 branching center

The anionic methods for the synthesis of homo- and heteroarm (hybrid) star-shaped polymers using fullerene C₆₀ aPre considered. The possibilities of fullerene C₆₀ as an agent of combination of living polymer chains and the procedures of transformation of polymer derivatives of C₆₀ (hexaadducts) into polyfunctional macroinitiators of anionic polymerization of vinyl monomers are shown. The methods for functionalization of polymer fullerene derivatives and their combinations into structures of complex controlled architecture are presented. The structural features and initiating properties of the living polymer fullerene derivatives and their role in the formation of heteroarm star-shaped macromolecules with the controlled number of branches and predetermined molecular weight characteristics of the arms are discussed. The hydrodynamic properties of the star-shaped fullerene-containing polymers are considered. The data on the small-angle neutron scattering study of self-organization of the stars in solutions are presented.     

Photodynamic Activity of Fullerene Derivatives Solubilized in Water by Natural-Product-Based Solubilizing Agents

Water-soluble fullerenes prepared by using solubilizing agents based on natural products are promising photosensitizers for photodynamic therapy. Cyclodextrin, β-1,3-glucan, lysozyme, and liposomes can stably solubilize not only C₆₀ and C₇₀, but also some C₆₀ derivatives in water. To improve the solubilities of fullerenes, specific methods have been developed for each solubilizing agent. Water-soluble C₆₀ and C₇₀ exhibit photoinduced cytotoxicity under near-ultraviolet irradiation, but not at wavelengths over 600 nm, which are the appropriate wavelengths for photodynamic therapy. However, dyad complexes of solubilized C₆₀ derivatives combined with light-harvesting antenna molecules improve the photoinduced cytotoxicities at wavelengths over 600 nm. Furthermore, controlling the fullerene and antenna molecule positions within the solubilizing agents affects the performance of the photosensitizer.     

Anionic methods for synthesis of star polymers

Leading position among numerous methods for synthesis of star polymers is occupied, as regards their potential and diversity, by techniques based on the anionic polymerization. The review considers five basic approaches to application of the anionic polymerization mechanisms in relation to an agent used or procedure employed (methods with polyfunctional coupling agents, multifunctional initiators, polymerizing and nonpolymerizing divinyl agents; multistage methods, methods using C₆₀ fullerene). All groups of syntheses are illustrated by examples, and advantages of methods for synthesis of various homo- and heteroarm star structures are demonstrated. Particular attention is given to syntheses with C₆₀ fullerene. The potential of C₆₀ fullerene as a coupling agent for “living” polymer chains and methods for conversion of polymeric derivatives of C₆₀ (hexaadducts) to polyfunctional macroinitiators of anionic polymerization are described and techniques for functionalization of polymeric fullerene derivatives and their coupling into structures with a complex controllable architecture are presented.     

Mono- and Di-Pyrene [60]Fullerene and [70]Fullerene Derivatives as Potential Components for Photovoltaic Devices

In the present work, we report the successful synthesis and characterization of six (two new) fullerene mono- and di-pyrene derivatives based on C₆₀ and C₇₀ fullerenes. The synthesized compounds were characterized by spectral methods (ESI-MS, ¹H-NMR, ¹³C-NMR, UV-Vis, FT-IR, photoluminescence and photocurrent spectroscopy). The energy of HOMO and LUMO levels and the band gaps were determined from cyclic voltammetry and compared with the theoretical values calculated according to the DFT/B3LYP/6-31G(d) and DFT/PBE/6-311G(d,p) approach for fully optimized molecular structures at the DFT/B3LYP/6-31G(d) level. Efficiency of solar cells made of PTB7: C₆₀ and C₇₀ fullerene pyrene derivatives were analyzed based on the determined energy levels of the HOMO and LUMO orbitals of the derivatives as well as the extensive spectral results of fullerene derivatives and their mixtures with PTB7. As a result, we found that the electronic and spectral properties, on which the efficiency of a photovoltaic cell is believed to depend, slightly changes with the number and type of pyrene substituents on the fullerene core. The efficiency of constructed solar cells largely depends on the homogeneity of the photovoltaic layer, which, in turn, is a derivative of the solubility of fullerene derivatives in the solvent used to apply these layers by spincoating.     

Spectroscopic and electrochemical studies on the interaction of an inclusion complex of β-cyclodextrin/fullerene with bovine serum albumin in aqueous solution

The potential effect of human exposure to carbonaceous nanomaterials (e.g., fullerenes or their derivatives) in the environment has become a concern. In the current study, we report the interaction of one water-soluble fullerene with bovine serum albumin using spectroscopic and electrochemical methods under aqueous solutions. The novel supramolecular inclusion complex of the water-soluble fullerene (β-CD)₂/C₆₀ was synthesized and characterized. In the mechanism discussed, the spectroscopic methods such as fluorescence quenching and ultraviolet-visible absorption, proved that the fluorescence quenching of BSA by (β-CD)₂/C₆₀ was the result of the formation of (β-CD)₂/C₆₀-BSA complex and that the mechanism of quenching might be a static quenching procedure. The binding constants K_a, the number of binding sites n, and the corresponding thermodynamic parameters ΔG, ΔH, and ΔS at different temperatures were calculated through fluorescence spectroscopy, then as an auxiliary method, the electrochemical impedance spectroscopy (EIS) experiments confirmed this conclusion. The results indicated that the electrostatic interactions play a major role in (β-CD)₂/C₆₀-BSA association. The circular dichroism spectra show the conformation change of the effect of (β-CD)₂/C₆₀ on the conformation of BSA, which was confirmed by the results of the three-dimensional fluorescence spectra. Site marker competitive experiments indicate that the binding of (β-CD)₂/C₆₀ to BSA primarily took place in site I. The distance r between donor (BSA) and acceptor ((β-CD)₂/C₆₀) was obtained according to fluorescence resonance energy transfer (FRET). This work aims to demonstrate the mechanisms of the formation of the complex between water-soluble fullerene and protein under physiological conditions, as well as the remediation for the possible unwarranted biological effects of water-soluble fullerene.     

Almost Enclosed Buckyball Joints: Synthesis,Complex Formation,and Computational Simulations of Pentypticene‐Extended Tribenzotriquinacene

We report the synthesis of a tribenzotriquinacene‐based (TBTQ) receptor ( 3 ) for C₆₀ fullerene, which is extended by pentiptycene moieties to provide an almost enclosed concave ball bearing. The system serves as a model for a self‐assembling molecular rotor with a flexible and adapting stator. Unexpectedly, nuclear magnetic resonance spectroscopic investigations reveal a surprisingly low complex stability constant of K₁=213±37 M ^?1 for [C₆₀? 3 ], seemingly inconsistent with the previously reported TBTQ systems. Molecular dynamics (MD) simulations have been conducted for three different [C₆₀?TBTQ] complexes to resolve this. Because of the dominating dispersive interactions, the binding energies increase with the contact area between guest and host, however, only for rigid host structures. By means of free‐energy calculations with an explicit solvent model it can be shown that the novel flexible TBTQ receptor 3 binds weakly because of hampering entropic contributions.     

A systematic study of rare gas atoms encapsulated in small fullerenes using dispersion corrected density functional theory

The most stable fullerene structures from C₂₀ to C₆₀ are chosen to study the energetics and geometrical consequences of encapsulating the rare gas elements He, Ne, or Ar inside the fullerene cage using dispersion corrected density functional theory. An exponential increase in stability is found with increasing number of carbon atoms. A similar exponential law is found for the volume expansion of the cage due to rare gas encapsulation with decreasing number of carbon atoms. We show that dispersion interactions become important with increasing size of the fullerene cage, where Van der Waals forces between the rare gas atom and the fullerene cage start to dominate over repulsive interactions. The smallest fullerenes where encapsulation of a rare gas element is energetically still favorable are He@C₄₈, Ne@C₅₂, and Ar@C₅₈. While dispersion interactions follow the trend Ar > Ne > He inside C₆₀ due to the trend in the rare gas dipole polarizabilities, repulsive forces become soon dominant with smaller cage size and we have a complete reversal for the energetics of rare gas encapsulation at C₅₀. © 2014 Wiley Periodicals, Inc.     

Morphology Engineering of Fullerene (C60) Microstructures Featuring Surface Cracks with Enhanced Photoluminescence and Microscopic Recognition Properties

Surface cracks could improve the optical and photoelectronic properties of crystalline materials as they increase specific surface area, but the controlled self-assembly of fullerene (C₆₀) molecules into micro-/nanostructures with surface cracks is still challenging. Herein, we report the morphology engineering of novel C₆₀ microstructures bearing surface cracks for the first time, selecting phenetole and propan-1-ol (NPA) as good and poor solvents, respectively. Our systematic investigations reveal that phenetole molecules initially participate in the formation of the ends of the C₆₀ microstructures, and then NPA molecules are involved in the gradual growth of the sidewalls of the microstructures. Therefore, the surface cracks of C₆₀ microstructures can be finely regulated by adjusting the addition of NPA and the crystallization time. Interestingly, the cracked C₆₀ microstructures show superior photoluminescence properties relative to the smooth microstructures due to the increased specific surface area. In addition, C₆₀ microstructures with wide cracks show preferential recognition of silica particles over C₆₀ particles owing to electrostatic interactions between the negatively charged C₆₀ microstructures and the positively charged silica microparticles. These C₆₀ crystals with surface cracks have potential applications from optoelectronics to biology.     

Study of structural and thermodynamic parameters of adsorption layers using density functional theory. Local density and adsorption isotherms on spherical surfaces

Local density profiles in adsorption layers of Lennard-Jones fluids on two-dimensional adsorbents with spherical geometry and isotherms of excess (Gibbs) adsorption have been calculated using the classical density functional theory (approximations with weighting coefficients). The local density profiles have been found in hydrogen adsorption layers on C₆₀, C₂₄₀, and C₅₄₀ fullerene molecules. The calculations have been performed for both subcritical and supercritical temperature ranges. It has been shown that, at a pressure of 10 MPa and a temperature of 77 K, the gravimetric (mass) hydrogen density on C₆₀ fullerene is 7.6 wt %, which is in good agreement with the results of molecular dynamics simulation and experimental data. It has also been established that the gravimetric hydrogen density on C₆₀ fullerene is higher than that on C₂₄₀ and C₅₄₀ fullerenes, being comparable with its value in a slitlike pore of a carbon adsorbent.     

Complex formation between water-soluble sulfonated calixarenes and C60 fullerene

The inclusion complexes of sulfonated thiacalix[4]arene 1 and calix[6]arene 2 sodium salts with C₆₀ fullerene were investigated by photoluminescence (PL) and quantum-chemical methods. The stoichiometries of calixarene/C₆₀ complexes were found to be 2:1 for 1 and 1:1 for 2. Related quantum-chemical investigations show that C₆₀ fullerene is included in a cavity composed of two half-bowl molecules of 1. The C₆₀ fullerene ball is located deep within the cavity of 2 and the negatively charged sulfonate arms probably inhibit the formation of the bowl-shaped capsule that was observed in the case of 1.     

Self-assembling of fullerene C<Subscript>60</Subscript> into (C<Subscript>60</Subscript>)<Subscript><Emphasis Type="Italic">n</Emphasis></Subscript> clasters in aromatic solvents

Self-assembling of fullerene C₆₀ into (C₆₀) _n clusters in aromatic solvents was studied. The role of the π-π interactions and dispersion forces in the (C₆₀) _n cluster formation in these media is demonstrated using the data on the solubility of fullerene C₆₀ in these solvents and their ionization potentials and also spectral characteristics of fullerene C₆₀ in the range of 326–340 nm in different solvents.     

Unique Separation Behavior of a C60 Fullerene‐Bonded Silica Monolith Prepared by an Effective Thermal Coupling Agent

Herein, we report a newly developed C₆₀ fullerene‐bonded silica monolith in a capillary with unique retention behavior due to the structure of C₆₀ fullerene. N‐Hydroxysuccinimide (NHS)‐conjugated C₆₀ fullerene was successfully synthesized by a thermal coupling agent, perfluorophenyl azide (PFPA), and assigned by spectroscopic analyses. Then, NHS‐PFPA‐C₆₀ fullerene was attached onto the surface of a silica monolith in a capillary. The capillary provided specific separation ability for polycyclic aromatic hydrocarbons in liquid chromatography by an effective π–π interaction. Furthermore, corannulene, which has a hemispherical structure, was selectively retained in the capillary based on the specific structural recognition due to the spherical C₆₀ fullerene. This is the first report revealing the spherical recognition ability by C₆₀ fullerene in liquid chromatographic separation.