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1.
NBO analysis and hybrid density functional theory–based method (B3LYP/6-311+G**) was used to study the anomeric effects (AE), dipole–dipole interactions, and steric repulsion effects on the conformational properties of 2,3,5,6-tetrahalo-1,4-dioxane [halo = F (1), Cl (2), Br (3)], 2,3,5,6-tetrahalo-1,4-dithiane [halo = F (4), Cl (5), Br (6)], and 2,3,5,6-etrahalo-1,4-diselenane [halo = F (7), Cl (8), Br (9)]. B3LYP/6-311+G** results revealed a strong axial preference in compounds 13. Gibbs free energy difference (G eqG ax) values (e.g., ΔG eq-ax) between the axial and equatorial conformations of compound 1 to compound 3 are 8.19, 3.86, and 3.13 kcal mol?1, respectively, as calculated by the B3LYP/6-311+G** level of theory. On the other hand, the NBO analysis of donor–acceptor (bond–antibond) interactions revealed that the AE for compounds 1–3 are ?12.26, ?16.46, and ?18.11 kcal mol?1, respectively. Contrary to the increase of the AE values from compound 1 to compound 3, the increase of the steric repulsions (e.g., 1,3-syn-axial repulsions) could fairly explain the decrease of the axial conformation stability in compounds 13 compared to their equatorial conformations. Further, the correlations between the AE, structural parameters, and conformational behavior of compounds 4–9 have been investigated.  相似文献   

2.
Abstract

The configurational properties of N,N′-dimethyl-1,3-diazacyclohexane (1), N,N′-dimethyl-1,3-diphosphacyclohexane (2), and N,N′-dimethyl-1,3-diarsenacyclohexane (3) have been analyzed by means of hybrid density functional theory (B3LYP/6-311+G**)–based method and NBO interpretation. The NBO analysis of donor–acceptor (bond?antibond) interactions revealed that the calculated generalized anomeric effects (GAE) between the equatorial ee-ae, ea-aa, and ee-aa configurations decrease from compound 1 to compound 3. Contrary to the decrease of the GAE values for ee-ea configurations, the ea configuration stability increases from compound 1 to compound 3. This could be explained reasonably by the decrease of the nonbonded steric repulsions (by lengthening of the C?M bond lengths increase from compound 1 to compound 3) between the ee, ea, and aa configurations from compound 1 to compound 3. The correlations between the GAE, Wiberg bond indexes (WBI), natural bond orders (NBOs), dipole moments, orbital integrals, structural parameters, and Gibbs free energy difference (G eeG ea, G eaG aa G eeG aa) values (i.e., ΔG ee-ea, ΔG ea-aa, ΔG ee-aa) values between the ee, ea, and aa configurations of compounds 1–3 have investigated.

GRAPHICAL ABSTRACT  相似文献   

3.
Abstract

The effective factors on the conformational properties of 1,3-dioxanyl (1), -dithianyl (2), and -diselenanyl (3) carbanions have been investigated by means of the hybrid-density functional theory (DFT) (B3LYP/6-311+G**)-based method and natural bond orbital (NBO) interpretation. The results obtained showed that the axial conformation (i.e., the axial H atom attached to C2) of carbanion 1 is more stable than its equatorial conformation. Contrary to the carbanion 1, the equatorial conformations of carbanions 2 and 3 are more stable than their corresponding axial conformations. The instability of the axial conformations of carbanions 13 increases from carbanion 1 to carbanion 2 but decreases from carbanion 2 to carbanion 3. The NBO analysis showed that the anomeric effect (AE) associated with the electron delocalization increases from carbanion 1 to carbanion 2, but decreases from carbanion 2 to carbanion 3. The calculated total dipole moment values of the axial conformations of carbanions 1–3 are greater than those of their corresponding equatorial conformations, but the calculated total dipole moment difference values between the axial and equatorial conformations decreases from carbanion 1 to carbanion 3. Consequently, the AE associated with the electron delocalization, but not the total dipole moment changes (i.e., Δμax–eq), thus explaining the total energy differences between the axial and equatorial conformations of carbanions 13. The correlations between the AE, dipole moments, ΔGax–eq, structural parameters, and conformational behaviors of carbanions 13 have been investigated.

Supplemental materials are available for this article. Go to the publisher's online edition of Phosphorus, Sulfur, and Silicon and the Related Elements to view the free supplemental file.  相似文献   

4.
The conformational behavior of 1,2-difluoroethane (1), 1,2-dichloroethane (2), 1,2-dibromoethane (3), and 1,2-diiodoethane (4) have been analyzed by means of complete basis set CBS-QB3, hybrid-density functional theory (B3LYP/Def2-TZVPP) based methods and natural bond orbital (NBO) interpretation. Both methods showed the expected greater stability of the gauche conformation of compound 1 compared to its anti conformation. Contrary to compound 1, the anti conformations of compounds 24 are more stable than their gauche conformation. The stability of the anti conformation compared to the gauche conformation increases from compound 1 to compound 4. The NBO analysis of donor–acceptor (σ → σ*) interactions showed that the generalized anomeric effect (GAE) is in favor of the gauche conformation of compound 1. Contrary to compound 1, GAE is in favor of the anti conformations of compounds 24. The GAE values calculated (i.e., GAEanti − GAEgauche) increase from compound 1 to compound 4. On the other hand, the calculated dipole moment values for the gauche conformations decrease from compound 1 to compound 4. In the conflict between the GAE and dipole moments, the former succeeded in accounting for the increase of the anti conformation stability from compound 1 to compound 4. There is a direct correlation between the calculated GAE, ∆[r c–c(G) − r c–c(A)] and ∆[r c–x(A) − r c–x(G)] parameters. The correlations between the GAE, bond orders, total steric exchange energies (TSEEs), ΔG Anti–Gauche, ΔG (Gauche → Gauche′, C 2v), ΔG (Anti → Gauche, C 2), dipole–dipole interactions, structural parameters, and conformational behaviors of compounds 14 have been investigated.  相似文献   

5.
Abstract

The gas-phase thermal decomposition kinetics of silacyclobutane (1), 1-methyl- silacyclobutane (2), and 1,1-dimethyl-1-silacyclobutane (3) has been theoretically studied at the B3LYP/6-311G**, B3PW91/6-311G**, and MPW1PW91/6-311G** levels. The B3LYP/6-311G** method was found to give a reasonable good agreement with the experimental kinetics and thermodynamic parameters. The decomposition reaction of compounds 13 yields ethylene and the corresponding silene. Based on the optimized ground state geometries using B3LYP/6-311G** method, the natural bond orbital (NBO) analysis of donor-acceptor (bonding–antibonding) interactions revealed that the perturbation energies (E2) associated with the electronic delocalization from σSi1–C2 to σ*C4–Si1 orbitals increase from compounds 1 to 3. The σSi1–C2→σ*C4–Si1 resonance energies for compounds 13 are 1.17, 1.26, and 1.43 kcal/mol, respectively. Also, the decomposition process in these compounds is controlled by σ→σ* resonance energies. Moreover, the obtained order of energy barriers could be explained by the number of electron-releasing methyl groups substituted to the Sisp2 atom. NBO analysis shows that the occupancies of σSi1–C2 bonds decrease for compounds 13 as 3 < 2 < 1, and the occupancies of σ*Si1–C2 bonds increase in the opposite order (3 > 2 > 1). Moreover, these results can fairly explain the decrease of the energy barriers (ΔEo) of the decomposition reaction of compounds 1 to 3. The calculated data demonstrate that in the decomposition process of the studied compounds, the polarization of the C3–C4 bond is the rate determining factor. Analysis of bond orders, NBO charges, bond indexes, synchronicity parameters, and IRC calculations indicate that these reactions are occurring through a concerted and asynchronous four-membered cyclic transition state type of mechanism.  相似文献   

6.
Abstract

Natural bond orbital (NBO) interpretation and hybrid density functional theory (hybrid-DFT: B3LYP/Def2-TZVPP)-based methods were used to investigate the impacts of the generalized anomeric effects (GAE), electrostatic, and steric interactions on the conformational properties of cis and trans isomers of 2-fluoro-, 2-chloro-, and 2-bromotetrahydrothiopyran S-oxide (13). The results obtained showed that the trans-axial configurations are the most stable forms of compounds 13. Based on the results obtained, the instability of the second lowest energy-minimum (cis-equatorial configuration, with axial S?O and equatorial C?X bonds, X = halogen atoms) increases from compound 1 to compound 3. This trend is also observed for the third lowest energy-minimum (i.e., the trans-equatorial configuration). Contrary to the trend observed for the cis- and trans-equatorial forms, the instability of the cis-axial form compared to the trans-axial form, increases from 1 to 2 but decreases slightly from 2 to 3. The correlations between the GAE, bond orders, steric effects, ΔG, Δμ, structural parameters, and conformational and configurational behaviors of compounds 1–3 have been investigated.

Supplemental materials are available for this article. Go to the publisher's online edition of Phosphorus, Sulfur, and Silicon and the Related Elements to view the free supplemental file.  相似文献   

7.
A new di-C-prenylated coumarin, 7-methoxy-6,8-bis-(2,3-dihydroxy-3-methylbutyl)-coumarin (1), together with seven known compounds, isopimpinellin (2), an arylbenzofuran (3), three flavonoids (46), (+)-maackianin (7) and echinoisoflavanone (8), were isolated from the leaves of Sophora interrupta Bedd. The structure of the new compound 1 as well as known compounds was elucidated by extensive 1D and 2D NMR spectral studies.  相似文献   

8.
Decomposition of 2-fluoro-2,3-dihydrophosphinine (1), 2-chloro-2,3-dihydrophosphinine (3), 2-bromo-2,3-dihydrophosphinine (5) to phosphinine was investigated using Molecular orbital and density functional theory. Study on the B3LYP/6-311+G** level of theory revealed that the required energy for the decomposition of compounds 1, 3, and 5 to phosphinine is 30.56 kcal·mol?1, 28.23 kcal·mol?1, and 24.03 kcal·mol?1, respectively. HF/6-311+G**//B3LYP/6-311+G** calculated barrier height for the decomposition of compound 1, 3, and 5 to phosphinine is 57.56 kcal·mol?1, 37.26 kcal·mol?1, and 30.77 kcal·mol?1, respectively. Also, MP2/6-311+G**//B3LYP/6-311+G** results indicated that the barrier height for the decomposition of compound 1, 3, and 5 to phosphinine is 46.59 kcal·mol?1, 47.28 kcal·mol?1, and 42.57 kcal·mol?1, respectively. Natural bond orbital (NBO) population analysis and nuclear independent chemical shift (NICS) results showed that, reactants are non-aromatic but products of elimination reaction are aromatic, C-H and C-X bonds are broken and H-X bond is appear.  相似文献   

9.
Ab initio molecular orbital and density functional theory were used to investigate energetic and structural properties of the various conformations of hexa-tertbutylbenzene (1), hexakis(trimethylsilyl)benzene (2), hexakis (trimethylgermyl)benzene (3), and hexakis(trimethylstannyl)benzene (4). HF/3-21G//HF/3-21G and B3LYP/3-21G//HF/3-21G results revealed that the Twist-Boat (TB) conformer of compound 1 is more stable than the 1-Chair (C), 1-Boat (B), and 1-Planar (P) conformers. B3LYP/3-21G//HF/3-21G results show that the 1- TB conformer is more stable than 1- C, 1- B, and 1- P conformers of about 1.13, 4.34, and 99.94 kcal mol?1 , respectively. Contrary to the stability order of compound 1 conformers, the C conformer of compounds 2–4 is more stable than TB, B, and P conformations, as calculated by B3LYP/3-21G//HF/3-21G and HF/3-21G//HF/3-21G levels of theory. The energy gap between the C and P conformers in compounds 1–4 is decreased in the following order: ΔE(4: C, P) < ΔE (3: C, P) < ΔE(2: C, P) < ΔE (1: C, P). This fact can be explained in terms of the increase of C aromatic -M (M═C, Si, Ge, and Sn) bond lengths and the decrease of steric (van der Waals) repulsions in the previously discussed compounds. For compounds 1–3, the calculations were also performed at the B3LYP/ 6-31G*//HF/3-21G level of theory. However, the comparison showed that the results at B3LYP/3-21G//HF/3-21G methods correlated well with those obtained at the B3LYP/6-31G*// HF/6-31G method. Further, NBO analysis revealed that in compounds 1–4, the resonance energy associated with the σM-C1 to σ*C2-C3 delocalization is 5.20, 9.68, 11.15, and 12.27 kcal mol?1, respectively. These resonance energy values could explain the easiness of the ring flipping processes of C, B, and TB conformers of compounds 4 to 1. Also, the NBO results showed that by an increase of the σM-C1 → σ *C2-C3 resonance energies in compounds 1–4, the σM-C1 bonding orbital occupancies decrease. This fact could fairly explain the increase of the Caryl-M bond length from compound 1 to 4. The NBO results are also in good agreement with the calculated energy barriers for the ring flipping of the chair conformations in compounds 1–4, as calculated by B3LYP and HF methods.  相似文献   

10.
Abstract

The nature of the transition state structures of the decomposition of 3-pyrroline (1), 2,5-dihydrofuran (2) and 2,5-dihydrothiophene (3) were investigated usingab initio Molecular Orbital (MO) and Density Factional Theory (DFT) methods. The energy barrierof the decomposition of compound 1 is smaller than compound 2 and compound 2 is smaller than compound 3. The energy barriers for the decomposition of compounds 1–3 are 46.20, 50.17, and 61.34 kcal mol?1, respectively, which is calculated by B3LYP/6-31G*//HF/6-31G* level of theory. Which is ingood agreement with reported experimental data. Contrary to the previously reported data, the distance between the cis-2-and-5-hydrogen atoms in compound 1 is greater than compound 2. The transition-state structures of the decomposition of compounds 1–3 are formed by interaction of the cis-2-and-5-hydrogen atoms. Also, the rings of compounds 1–3 in the transition state structures are puckered.  相似文献   

11.
12.
A new hydroquinone diglucoside along with five known compounds was isolated from the whole plant of Lysimachia fordiana Oliv. The structure of the new compound was determined to be 2-heptyl-6-methoxy-1,4-hydroquinone-1,4-di-O--D-glucopyranoside (6). The five known compounds were identified as pentacosane (1), stigmasterol (2), 2-heptyl-6-methoxy-1,4-benzoquinone (3), palmitic acid (4), and rutin (5), respectively. This is the first report of the isolation of Lysimachia fordiana Oliv. in the family Primulaceae.Published in Khimiya Prirodnykh Soedinenii, No. 5, pp. 377–379, September–October, 2004.  相似文献   

13.

Ab initio Hartree–Fock calculations at the HF/6-31G* level of theory for geometry optimization and the MP2/6-31G*//HF/6-31G* and B3LYP/6-311G(2df,p)//HF/6-31G* levels for a single point total energy calculation are reported for the important energy-minimum conformations of 1,1-dioxo-thiane (2), 1,1-dioxo-1,2-dithiane (3), 1,1-dioxo-1,3-dithiane (4), 1,1-dioxo-1,4-dithiane (5), 1,1,2-trioxo-1,2-dithiane (6), 1,1,3-trioxo-1,3-dithiane (7), 1,1,4-trioxo-1,4-dithiane (8), 1,1,2,2-tetroxo-1,2-dithiane (9), 1,1,3,3-tetroxo-1,3-dithiane (10), and 1,1,4,4-tetroxo-1,4-dithiane (11). According to the MP2/6-31G*//HF/6-31G* calculations, compound 5 is more stable than 3 and 4 by 7.8 and 8.9 kJ mol?1, respectively. The axial geometries of 6 and 8 are more stable than the equatorial forms by 21.4 and 19.1 kJ mol?1, respectively, but the equatorial form of 7 is 4.1 kJ mol?1 more stable than the axial geometry. Compound 11 is more stable than 9 and 10 by 49.3 and 31.0 kJ mol?1, respectively.  相似文献   

14.
Besides the known compounds ( ± ) 3,3-bis-demethylpinoresinol (2), americanol A (3), spergulagenic acid (4), epi-acetylaleuritolic acid (5), 6′-palmityl-α-spinateryl-d-glucoside (6a) and 6′-palmityl-δ7-stigmastenyl-d-glucoside (6b), a novel peltogynoid (1) named icosandrin was obtained from the dried fruits of Phytolacca icosandra. This new compound was characterised by 1D-/2D-NMR, UV, IR and HR-MS techniques as 11ξ-methoxy-6,7-methylenedioxy-[2]benzopyrano-[4,3-b][1]-benzopyran-4-one. Toxicity of 1 was assessed through the Brine Shrimp Lethality Assay. Lignan 2 is reported for the first time in Phytolaccaceae family.  相似文献   

15.
Abstract

Stereoelectronic interactions associated with the AE and also the conformational and structural properties of 1,3-oxathiane S-oxide (1), 1,3-dithiane S-oxide (2), 1,3-thiaselenane S-oxide (3), 1,3-oxaselenane Se-oxide (4), 1,3-thiaselenane Se-oxide (5), and 1,3-diselenane Se-oxide (6) were investigated using quantum mechanical methods. These compounds were fully optimized at the B3LYP/6 – 311 + G** and HF/6 – 311 + G** levels of theory. The Gibbs Free Energy, Enthalpy, and Entropy differences (i.e., ΔG, ΔH, and ΔS) between the axial and equatorial conformations were calculated at the B3LYP/6 – 311 + G** and HF/6 – 311 + G** levels of theory. The decrease of the AE is corresponding to the decreases of calculated Δ(G axG eq) value of the above mentioned compounds. The calculated AE values are more significant for the justification of the conformational dominances of the compounds than steric effects. In this work, the relations between the Anomeric Effects, donor and acceptor orbital energies, occupancies, structural parameters, dipole–dipole interactions, and conformational behavior of the compounds have been studied.  相似文献   

16.
A new isocoumarin, 3,4-dihydro-6-methoxy-8-hydroxy-3,4,5-trimethylisocoumarin-7-carboxylic acid methyl ester (1), together with three known compounds, 3,4-dihydro-4,8-dihydroxy-3,5-dimethylisocoumarin (2), 3,4-dihydro-8-hydroxy-3-methylisocoumarin-5-carboxylic acid (3), and Entinclole SB (4) were isolated from the mangrove endophytic fungus (No. dz17). The structure of the compound 1 was elucidated by analysis of spectroscopic data. Primary bioassays showed that 1 exhibited weak cytotoxicity against Hep-2 and HepG2 cells. Published in Khimiya Prirodnykh Soedinenii, No. 6, pp. 543–545, November–December, 2007.  相似文献   

17.

Some novel 5-subistituted amino-3-methylthiophene-2,4-dicarboxylic acid diethyl ester (3–6), 3,5-dimethyl-4-oxo-2-thioxo-1,2,3,4-tetra-hydro-thieno[2,3-d]pyrimi-dine (7), imidazothienopyrimidene (8), and 1,2,4-triazolo-thienopyrimidine (11) were synthesized via a reaction of the isothiocyanate 2 with different reagents. The identification of the new compounds was established by elemental analysis, and IR, 1H NMR, and mass spectral data. Some prepared compounds were tested for their radioprotective and anticancer activities. Compounds 7 and 16 showed significant activities against EAC cells, while compound 5 exhibited radioprotective activity.  相似文献   

18.

Ab initio Hartree–Fock calculations at the HF/6?31 G* level of theory for geometry optimization and the MP2/6?31 G*//HF/6?31 G* and B3LYP/6-311G(2df,p)//HF/6?31 G* levels for a single point total energy calculation are reported for the important energy-minimum conformations of 1-oxo-thiane (1), 1-oxo-1,2-dithiane (2), 1-oxo-1,3-dithiane (3), 1-oxo-1,4-dithiane (4), 1,2-dioxo-1,2-dithiane (5), 1,3-dioxo-1,3-dithiane (6), and 1,4-dioxo-1,4-dithiane (7). According to the MP2/6-31G*//HF/6-31G* calculations, while the axial conformations of compounds 1, 2, and 4 are more stable than the equatorial forms by 6.0, 20.0, and 9.9 kJ mol?1, respectively, the equatorial geometry of 3 is 3.0 kJ mol?1 more stable than the axial form. The diaxial conformations of 5 and 7 are calculated to have similar energies, but the diaxial form of 6 is about 43 kJ mol?1 less stable than that of 5 or 7.  相似文献   

19.
Abstract

As part of our continuing efforts to explore bioactive compounds from natural resources, a new iridoid glycoside, adoxosidic acid-6′-oleuroperic ester (1), together with one known phenylethanoid glycoside (2) and two known flavonoid glycosides (3–4) were isolated from the fruit of Forsythia suspensa. The structure of the new compound (1) was elucidated through 1D and 2D NMR spectroscopic data and HR-ESIMS. Interestingly, compound 1 was a monoterpene ester of one iridoid glycoside. Compounds 2–4 were identified as calceolarioside A (2), kaempferol-3-O-rutinoside (3), kampferol-3-O-robinobioside (4) on the basis of NMR spectroscopic data analyses and comparison with the data reported in the literature. The antiviral activity aganisist influenza A (H5N1) virus of compound 1 was studied as well.  相似文献   

20.
A theoretical study of the thermal decomposition kinetics of oxetane (1), 2-methyloxetane (2), and 2,2-dimethyloxetane (3) has been carried out at the B3LYP/6-311+G**, B3PW91/6-311+G**, and MPW1PW91/6-311+G** levels of theory. The MPW1PW91/6-311+G** method was found to give a reasonable good agreement with the experimental kinetics and thermodynamic parameters. The decomposition reaction of compounds 1~3 yields formaldehyde and the corresponding substituted olefin. Based on the optimized ground state geometries using MPW1PW91/6-311+G** method, the natural bond orbital (NBO) analysis of donor-acceptor (bond-antibond) interactions revealed that the stabilization energies associated with the electronic delocalization from σC3-C4 bonding to σ*O1-C2 antibonding orbitals decrease from compounds 1 to 3. The σC3-C4→σO1-C2 resonance energies for compounds 1~3 are 2.63, 2.59 and 2.45 kcal mol-1, respectively. Further, the results showed that the energy gaps between σC3-C4 bonding and σ*O1-C2 antibonding orbitals decrease from compounds 1 to 3. Also, the decomposition process in these compounds are controlled by σ→σ* resonance energies. Moreover, the obtained order of energy barriers could be explained by the number of electron-releasing methyl groups substituted to the Csp3 atom (which is attached to oxygen atom). NBO analysis shows that the occupancies of σCsp3-O bonds decrease for compounds 1~3 as 3<2<1, and those of σCsp3-O bonds increase in the opposite order (3 > 2 > 1). This fact illustrates a comparatively easier thermal decomposition of the sCsp3-O bond in compound 3 compared to compound 2, and in compound 2 compared to compound 1. NBO results indicate that these reactions are occurring through a concerted and asynchronous four-membered cyclic transition state type of mechanism.  相似文献   

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