天冬酰胺的环化缩合反应及其在合成拮抗剂与吗啡肽中的应用

天冬酰胺的环化缩合反应及其在合成拮抗剂与吗啡肽中的应用;四氢嘧啶酮;构象;内源性吗啡肽     

Molecular conformations of aminophenylimidazoles exhibiting antiulcer activities

To experimentally clarify a possible stereostructure-activity relationship proposed for H2-receptor antagonists, three 5-aminophenylimidazoles (1, 2 and 3), in which respective amino groups are located on the ortho, meta and para positions of the benzene ring, were synthesized and examined for their conformational characteristics using X-ray diffraction and proton nuclear magnetic resonance (1H-NMR) methods, and for antiulcer activities on rats and H2-receptor antagonist activities in guinea pig. The ortho isomer 1, which preferentially formed an intramolecular N-H (amino)...N (imidazole) hydrogen bond, showed the highest antiulcer activity with half the efficacy of cimetidine. On the other hand, none of 1, 2 and 3 showed significant H2-receptor antagonist activity. Based on these results, the conformational characteristic for the exhibition of antiulcer activity has been discussed.     

Acenaphthylene‐Fused Cyclo[8]pyrroles with Intense Near‐IR‐Region Absorption Bands

An acenaphthylene‐fused cyclo[8]pyrrole was synthesized by using an oxidative coupling reaction of the corresponding 2,2′‐bipyrrole. Two conformational isomers 1 a and 1 b were isolated, and their molecular structures were elucidated by X‐ray crystallographic studies. The less‐polar and lower‐symmetry 1 b isomer can be converted into the 1 a isomer through a thermal ring flip. Application of the perimeter model developed by Michl to magnetic circular dichroism spectroscopic data and theoretical calculations demonstrate that there is a marked redshift of the near‐IR absorption maxima relative to cyclo[8]isoindole because there is a significant stabilization of the LUMO due to the differing effects of a fused ring expansion with acenaphthylene and benzene moieties on the frontier π molecular orbitals.     

A new approach to the synthesis of indole-and benzofuran-containing tetracyclic condensed systems

A new method is described for the synthesis of the 1H-benzo[b]furoindole heterocyclic systems from the corresponding isomeric amino acids with amino groups at positions 2 and 3. By this method it is possible to obtain these tetracyclic systems not only in the form of one isomer but also to convert them from one to the other. From the tetracyclic systems with angular structure it is possible to obtain the corresponding linear isomers. On the other hand, from the isomer with the linear structure it is possible to change to the isomer with angular fusion of the pyrrole ring. The classical Fischer reaction served as model for such transformations. __________ Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 10, pp. 1463–1471, October, 2007.     

NMR and Molecular Mechanics Studies on Configurational Isomerism and Conformational Equilibrium of Chiral Cyclohexenones

Chiral diastereomers of 2-isopropyl-5-methyl-6-(4-phenyl)benzylcyclohex-2-enone and their isomer 2-(4-phenylbenzyl)-3-methyl-6-isopropylcyclohex-2-enone, which are products of an acid-catalyzed intramolecular rearrangement of 3R,6R-2-(4-phenylbenzylidene)-3-methyl-6-isopropylcyclohexanone, were investigated to show that conformational analysis by molecular mechanics and ¹H NMR spectroscopy permits an integrated solution of three structural problems: double bond location in an aliphatic ring for isomeric products; determination of the stereochemical configuration for the two diastereomers; evaluation of the conformational equilibrium between the diastereomers. Based on the results of calculations, this is achieved by estimating the configuration- and conformation-sensitive proton spin–spin coupling constants of the cyclohexenone ring for alternative structures and correlating them with ¹H NMR data.     

Elektrophile Substitution von Cymantrenen, 2. Mitt.: Darstellung undFriedel—Crafts-Acetylierung von Alkylcymantrenen

Mono-, di- and trialkyl cymantrenes have been acetylated and benzoylated according toFriedel—Crafts and the isomer distribution has been determined. Except for cyclic compounds, substitution at the β-position is more or less favoured. In most cases the pure isomers have been isolated by preparative thin layer chromatography. The effect of chain length, branching, and conformational mobility on the electrophilic substitution of cymantrenes is discussed. Benzyl cymantrene is attacked more easily in the cyclopentadienyl than in the phenyl ring.     

Two conformers of 10,11‐dihydro‐5H‐dibenzo[a,d]cyclo­heptene spiro‐linked with homobenzoquinone epoxide

The crystal structures of the two thermally equilibrated conformational isomers of the epoxide 1′,5′‐dimethyl­spiro[10,11‐dihydro‐5H‐dibenzo[a,d]cyclo­heptene‐5,8′‐4′‐oxatricyclo[5.1.0.0^3,5]octane]‐2′,6′‐dione, C₂₃H₂₀O₃, have been determined by X‐ray diffraction. In the tricyclic dione skeleton, the oxirane and cyclo­propane rings adopt an anti structure with respect to the conjunct quinone frame. The spiro‐linked 10,11‐dihydro‐5H‐dibenzo[a,d]cyclo­heptene ring of the major isomer has a fairly twisted boat form, folding opposite to the adjoining cyclo­propane methyl substituent, whereas the seven‐membered ring of the minor isomer has an almost ideal twist–boat form, inversely folding to the side of the relevant methyl group. The conformational structures of these isomers have been compared with those of the corresponding isomers of the unepoxidized homobenzoquinone.     

Solution dynamics and stability of lanthanide(III) (S)-2-(p-nitrobenzyl)DOTA complexes

Addition of a benzyl substituent to the macrocyclic ring of DOTA has a substantial impact on the conformational ring flipping motion of the macrocycle in the resulting LnDOTA complexes. The p-NO2-benzyl substituent in the Ln(p-NO2-Bn-DOTA)- complexes lies in an equatorial position and effectively "locks" the conformation of the ring into the deltadeltadeltadelta configuration. The presence of the p-NO2-benzyl group also increases the population of the square antiprismatic (SAP) coordination isomer for all Ln(p-NO2-Bn-DOTA)- complexes relative to that seen for the respective LnDOTA- complexes. Despite this increase in SAP isomer population, the rate of water exchange in these complexes remains comparatively fast. The kinetic and thermodynamic stabilities of the Ln(p-NO2-Bn-DOTA)- complexes are also slightly lower than the corresponding LnDOTA- complexes but appear to be sufficiently high for in vivo use.     

Phosphorinane and Enol Rings in One Molecule. Evidence for Reciprocal Stabilization of Half-Chair Conformations

Abstract.

The X-ray crystal structure of 2-(2′,4′-dioxo-3′-pentyl)-5,5-dimethyl-2-oxo-1,3,2-dioxaphosphorinane (2) reveals significant half-chair distortion of the axially oriented cisenol ring. The molecule also undergoes in-plane deformations. R(O...O) = 2.410 Å in the enol moiety indicates a very strong hydrogen bonding. The enol content, δ_OH and thermodynamic parameters for the axial-equatorial conformational and keto-enol equilibriums were obtained from ¹H, ³¹P NMR and IR measurements in comparison with the planar 4,6-dimethyl isomer (1) containing equatorially oriented enol ring. The X-ray single crystal structure of 5,5-dimethyl-2-(methoxycarbonyl-3′-oxo-2′-butyl)-2-oxo-1,3,2-dioxaphosphorinane (3) reveals the unusual half-chair conformation of the dioxaphosphorinane cycle disposed a trans-enol ring substituent. ¹H, ³¹P NMR and IR solution data support the same structure displays a strong conformational preference while the minor forms are chair conformers with an axial or equatorial cis-enol ring.     

Templated synthesis of a rotaxane with a [Ru(diimine)3]2+ core

A rotaxane containing a ruthenium bisphenanthroline complex, acting as an axis, and a macrocycle incorporating a 2,2'-bipyridine (bpy) unit, threaded by the axis, has been synthesized. The bisphenanthroline ligand is such that its ruthenium(II) complexes possess a clearly identified axis, making such compounds ideal components of rotaxanes constructed around an octahedral ruthenium(II) center, which serves as a template. The ring is threaded by the axial ruthenium(II) precursor complex, to afford the corresponding pseudorotaxane in moderate yield. The X-ray structure analysis of this compound reveals the threaded nature of the complex. The length of the threaded ring (35 atoms in the periphery) is too short to allow easy threading of the axis through the macrocycle. As a consequence, an isomer is also obtained for which the axial ruthenium complex is attached in an exo fashion. (1)H NMR studies have been carried out, which reveal various conformational equilibria for the pseudorotaxane. Light-induced decoordination of the bpy-containing cyclic fragment was shown to be quantitative and to lead to the free ring and the axial ruthenium(II) complex, regardless of the starting compound (pseudorotaxane or exo isomer). Finally, the real rotaxane could be prepared, although it could not be separated from its exo isomer.     

Molecular Conformation of 2,2'-Dinitrodiphenylamine According to Dielectric Studies and Ab Initio Quantum Chemical Calculations

According to the results of ab initio calculations employing the HF/6-31G* approach, the isolated 2,2'-dinitrodiphenylamine molecule exists as an sc, sc conformer stabilized by a symmetric intramolecular bifurcated (three-center) hydrogen bond. In protophilic solvents (1,4-dioxane), the conformational equilibrium is also shifted in the direction of this rotational isomer.     

Micellization-induced conformational change of a chiral proline surfactant

A proline surfactant including two chiral carbons, sodium N-dodecanoyl-(4R)-hydroxy-L-prolinate (SDHP), has been synthesized, and its micellization behavior in aqueous solution has been investigated by 1H NMR spectroscopy. Two conformational isomers of SDHP, namely, Z and E, are discriminated in the NMR time scale, and critical micelle concentration is derived for each isomer separately. The transformation from E to Z is observed upon micellization, and the amount of Z isomer is approximately three times that of E isomer in the equilibrated system. Moreover, the variation in chemical shifts with the surfactant concentration reveals the shielding effect of the carboxyl group on the syn-side protons of the pyrrolidine ring, which implies that the pyrrolidine rings arrange in a side-to-side manner and lie parallel to the plane of the carboxyl bonds in the neighboring molecules. The difference in the directions of the carbonyl group between Z and E isomers essentially determines their different micellization abilities and molecular arrangements in the micellization process.     

Batch tautomer generation with MolTPC

Besides all their conformational degrees of freedom, drug‐like molecules and natural products often also undergo tautomeric interconversions. Compared to the huge efforts made in experimental investigation of tautomerism, open and free algorithmic solutions for prototropic tautomer generation are surprisingly rare. The few freely available software packages limit their output to a subset of the possible configurational space by sometimes unwanted prior assumptions and complete neglection of ring‐chain tautomerism. Here, we describe an adjustable fully automatic tautomer enumeration approach, which is freely available and also incorporates the detection of ring‐chain variants. The algorithm is implemented in the MolTPC framework and accessible on SourceForge. © 2013 Wiley Periodicals, Inc.     

Structures, stabilities, and equilibrium contents of C2-fragmentated C70 clusters

Density functional theory (DFT) calculations show that the C₂-fragmentation of C₇₀ destroys 4 of 37 original rings and generates 3 new rings, leading to 8 possible isomers. Each of those isomers contains a larger ring (7- or 8-member ring) with or without 4-member ring(s) besides 5- and 6-member rings. The most stable isomer consists of thirteen 5-member, twenty-two 6-member, and a 7-member rings without 4- and 8-member rings. The C₂-fragmentation energies (10.7–13.3 eV) of C₇₀ depend on resulted isomer-structures. Furthermore, the equilibrium fraction of the most stable isomer in the total isomers is 99.1%, 94.8%, and 94.0% at temperatures of 900, 1400, and 2000 K, respectively.     

WIN55212-2 docking to the CB1 cannabinoid receptor and multiple pathways for conformational induction

Key pharmacophoric elements for the (aminoalkyl)indole (AAI) CB1 cannabinoid receptor agonists are the aminoalkyl moiety, the lipophilic aroyl group, and the heterocyclic indole ring. In the present study, the docking space allowed for (R)-[2,3-dihydro-5-methyl-3-[(4-morpholinyl)methyl]pyrrolo[1,2,3-de]-1,4-benzoxazin-6-yl](1-naphthalenyl)methanone (WIN55212-2; 1) within the CB1 receptor was extensively explored by a docking approach that combines Monte Carlo (MC) and molecular dynamics (MD) simulations. The goals were to understand the key binding interactions of AAIs within the CB1 receptor and to examine the role of the ligand in inducing a receptor conformational change. From the findings of extensive SAR studies on the cannabinoid compounds and correlation between AAI binding affinity data and calculated binding energies, we proposed two alternative binding conformations, aroyl-up1 and aroyl-up2. These denote the directionality of the ligand naphthyl ring within the receptor upward with respect to the extracellular side. A comprehensive structural analysis of 1 demonstrated that the aroyl ring moiety could be important as the steric trigger for inducing CB1 receptor conformational change. Thus, it appears that aromatic-aromatic interactions are important not only for the binding of 1 but also for inducing receptor conformational change. It is possible that differences in the nature of the ligand binding could contribute to ligand-specific conformational changes in the receptor.     

The 1H NMR spectra of zinc complexes of pyridine-2-carbaldehyde 2′-pyridylhydrazone

Proton magnetic resonance spectra at 100 MHz are described for some zinc complexes of the E- and Z-isomers of pyridine-2-carbaldehyde 2′-pyridylhydrazone in d₆-dimethylsulphoxide solution. Chemical shift data are discussed qualitatively in relation to factors such as the charge on the metal ion, the anisotropy of ligand nitrogen atoms, electric field effects caused by the dipole moment of nitrogen lone pairs, metal-nonbonded-hydrogen interactions, ring current effects and the conformational changes undergone by each isomer on coordination.     

二(乙二胺)(2-氨基乙基)合钴(III)配合物构象研究

本文利用CFF方法分析了Co(Ⅲ)配合物二齿配体中较少见的四员环构象的特征,并模拟了这个四员环在配位环境下构象变化的过程。标题配合物[Co(CH_2CH_2NH_2)(NH_2CH_2CH_2NH_2)_2]~(2+)(图1)为光化学反应的中间产物,     

The [12]annulene global minimum

A new global minimum for [12]annulene has been computationally located. This mono-trans minimum 5 (CCCCCT) is computed to be 1.5 kcal/mol more stable (CCSD(T)/cc-pVDZ//BHHLYP/6-311+G**) than the known tri-trans isomer 1 (CTCTCT) and 2.4 kcal/mol lower than the di-trans isomer 4 (CCTCCT), for which there is indirect evidence. The barriers for several rearrangements of 5 were all computed to be above 15 kcal/mol, indicating that direct experimental characterization of 5 should be possible. The computed barriers for the dynamic processes (including conformational automerization) coupled with computed 1H NMR shift values should aid in the future characterization of this [12]annulene isomer.     

Synthesis of rac-(1R,4aR,9aR)-2-methyl-1,3,4,9a-tetrahydro-2H-1,4a-propanobenzofuro[2,3-c]pyridin-6-ol. An unusual double rearrangement leading to the ortho- and para-f oxide-bridged phenylmorphan isomers

In an attempt to obtain the para-f isomer, rac-(1R,4aR,9aR)-2-methyl-1,3,4,9a-tetrahydro-2H-1,4a-propanobenzofuro[2,3-c]pyridin-6-ol, via mesylation of an intermediate 9[small alpha]-hydroxyphenylmorphan, we obtained, instead, a rearranged chloro compound with a 5-membered nitrogen ring, 7-chloro-3a-(2,5-dimethoxyphenyl)-1-methyl-octahydroindole. This indole underwent a second rearrangement to give us the desired para-f isomer. The structures of the intermediate indole and the final product were unequivocally established by X-ray crystallography. A resynthesis of the known rac-(1R,4aR,9aR)-2-methyl-1,3,4,9a-tetrahydro-2H-1,4a-propanobenzofuro[2,3-c]pyridin-8-ol, the ortho-f isomer, was achieved using the reaction conditions for the para-f isomer, as well as under Mitsunobu reaction conditions where, unusually, the oxide-bridge ring in the 5-phenylmorphan was closed to obtain the desired product. The synthesis of the para-f isomer adds an additional compound to those oxide-bridged phenylmorphans that were initially visualized and synthesized; the establishment of the structure and configuration of 8 of the theoretically possible 12 racemates has now been achieved. The X-ray crystallographic structure analysis of the para-f isomer provides essential data that will be needed to establish the configuration of a ligand necessary to interact with an opioid receptor.     

Alcaloides du Peripterygia marginata (baill.) loes. (célastracées)—II : Synthèses totales dans la série de la (±) périphylline

Unequivocal total synthesis of an 8-membered ring isomer A and a 13-membered ring isomer B assisted the structural determination of periphylline, an alkaloid derived from spermidine.