Modification of Cyclodextrins for Use as Artificial Enzymes

The magical powers of enzymes have been attributed to their ability to bind specific substrates and catalyze reactions of the bound substrate. Artificial enzymes synthetically mimic the binding and the catalytic site to produce molecules that are not only smaller in size but also potentially have similar activity to the real enzymes. The main objective of our research is to create artificial redox enzymes by using cyclodextrins as binding sites and attaching flavin derivatives as the catalytic site. We have developed a strategy to attach a catalytic site to cyclodextrin exclusively at the 2-, 3- or the 6-position. The evaluation of the artificial enzyme in which flavin is attached to the 2-position gives a 647-fold acceleration factor. Although this is modest compared to those of real enzymes (which can have acceleration factors of a trillion), the artificial enzymes allow us to understand the elements that contribute to the incredible catalytic power of enzymes.     

Direct electron transfer in immobilized flavoenzyme chemically modified graphite electrodes

Direct electron transfer between covalently immobilized flavoenzymes and a cyanuric chloride-modified graphite electrode is observed via differential pulse voltammetry. L-Amino acid oxidase and xanthine oxidase display peaks arising from the reduction of flavin adenine dinucleotide. Peak current enhancements are observed for both covalently attached enzymes compared to their free and adsorbed state voltammograms. Studies concerning flavin removal and reconstitution indicate that xanthine oxidase contains multiple flavin chromophores which are nonequivalent.     

Catalytic,theoretical, and biological investigation of an enzyme mimic model

Artificial catalyst studies were always stayed at the kinetics investigation level, in this work bioactivity of designed catalyst were shown by the induction of biomineralization of the cells, indicating the possible use of enzyme mimics for biological applications. The development of artificial enzymes is a continuous quest for the development of tailored catalysts with improved activity and stability. Understanding the catalytic mechanism is a replaceable step for catalytic studies and artificial enzyme mimics provide an alternative way for catalysis and a better understanding of catalytic pathways at the same time. Here we designed an artificial catalyst model by decorating peptide nanofibers with a covalently conjugated catalytic triad sequence. Owing to the self-assembling nature of the peptide amphiphiles, multiple action units can be presented on the surface for enhanced catalytic performance. The designed catalyst has shown an enzyme-like kinetics profile with a significant substrate affinity. The cooperative action in between catalytic triad amino acids has shown improved catalytic activity in comparison to only the histidine-containing control group. Histidine is an irreplaceable contributor to catalytic action and this is an additional reason for control group selection. This new method based on the self-assembly of covalently conjugated action units offers a new platform for enzyme investigations and their further applications. Artificial catalyst studies always stayed at the kinetics investigation level, in this work bioactivity of the designed catalyst was shown by the induction of biomineralization of the cells, indicating the possible use of enzyme mimics for biological applications.     

Oxidase-cofactor electrodes aimed at the quantitative measure of substrate concentrations

Two approaches are described briefly for utilizing oxidase enzymes in electrochemical sensors. In one approach an oxidase enzyme flavin cofactor was covalently coupled to the electrode surface with the anticipated readout being a current proportional to the concentration of enzyme substrate. In the second approach the enzyme glucose oxidase was immobilized on platinum such that the potential of the platinum varied with the concentration of glucose in a solution buffered at pH 7.4. The status of the two projects is described.     

514— Oxidase-cofactor electrodes aimed at the quantitative measure of substrate concentrations

Two approaches are described briefly for utilizing oxidase enzymes in electrochemical sensors. In one approach an oxidase enzyme flavin cofactor was covalently coupled to the electrode surface with the anticipated readout being a current proportional to the concentration of enzyme substrate. In the second approach enzyme glocose oxidase was immobilized on platinum such that the potential of the platinum varied with the concentration of glucose in a solution buffered at pH 7.4. The status of the two projects is described.     

Catalytic Cyclophanes. Part XI. A flavo-thiazolio-cyclophane as a biomimetic catalyst for the preparative-scale electro-oxidation of aromatic aldehydes to methyl esters

Flavo-thiazolio-cyclophane 6 was prepared on a gram scale by an 18-step synthesis (Schemes 3 and 4). This pathway involved the very efficient preparation of bromo-cyclophane 32 (37% yield over 13-steps), which can be readily modified to create various multiply functionalized receptors. This bromide 32 was subsequently converted into the corresponding boronic acid and connected to the 7-bromoflavin 10 (Scheme 2) via Suzuki coupling to give flavo-cyclophane 36 . The thiazolium unit was then introduced after quaternization of the tertiary amino groups of 36 . Flavo-thiazolio-cyclophane 6 , with both prosthetic groups attached in proximity to the well-defined cyclophane binding site, is a functional model for the enzyme pyruvate oxidase. In basic methanolic solution, 6 catalyzes the oxidation of aromatic aldehydes to their corresponding methyl esters. Cyclophane 6 shows saturation kinetics, and the turnover number calculated for the oxidation of naphthalene-2-carbaldehyde to methyl naphthalene-2-carboxylate (k_cat = 0.22 s⁻¹) is one of the highest reported for an artificial enzyme. Control experiments showed that the catalytic advantages of 6 result from the macrocyclic binding and reaction site as well as from the covalent attachment of both cofactors to this site. The catalytic cycle is completed by electrochemical re-oxidation of the reduced flavin moiety at a low working electrode potential (- 0.3 V vs. Ag/AgCl), and up to ca. 100 catalytic cycles can be performed on a preparative scale, The intramolecular nature of the electron transfer from the active aldehyde intermediate to the flavin is particularly conducive to the oxidation of unreactive aldehydes.     

De novo design, synthesis, and function of semiartificial myoglobin conjugated with coiled-coil two-alpha-helix peptides

The introduction of a flavin chromophore on the myoglobin (Mb) surface and an effective electron-transfer (ET) reaction through the flavin were successfully achieved by utilizing the self-assembly of heterostranded coiled-coil peptides. We have prepared a semiartificial Mb, named Mb-1alphaK, in which an amphiphilic and cationic alpha-helix peptide is conjugated at the heme propionate (Heme-1alphaK). Heme-1alphaK has a covalently bound iron-protoporphyrin IX (heme) at the N terminus of a 1alphaK peptide sequence. This sequence was designed to form a heterostranded coiled-coil in the presence of a counterpart amphiphilic and anionic 1alphaE peptide sequence in a parallel orientation. Two peptides, Fla(1)-1alphaE and Fla(31)-1alphaE, both incorporating a 10-methylisoalloxazine moiety as an artificial flavin molecule, were also prepared (Fla=2-[7-(10-methyl)isoalloxazinyl]-2-oxoethyl). Heme-1alphaK was successfully inserted into apomyoglobin to give Mb-1alphaK. Mb-1alphaK recognized the flavin-modified peptides and a two-alpha-helix structure was formed. In addition, an efficient ET from reduced nicotinamide adenine dinucleotide to the heme center through the flavin unit was observed. The ET rate was faster in the presence of Fla(1)-1alphaE than in the presence of Fla(31)-1alphaE or the equivalent molecule that has no peptide chain. These results demonstrate that the introduction of a functional chromophore on the Mb surface can be achieved by using specific peptide-peptide interactions. Moreover, the dependence of the ET rate on the position of the flavin indicated that the distance between the heme active site and the flavin chromophore was regulated by the three-dimensional structure of the designed polypeptide.     

Flavin–cyclodextrin conjugates: effect of the structure on the catalytic activity in enantioselective sulfoxidations

A series of flavin–cyclodextrin conjugates has been prepared and tested in the enantioselective oxidations of prochiral aromatic and aliphatic sulfides with hydrogen peroxide. The newly prepared conjugates contain isoalloxazinium or alloxazinium moieties attached to the primary rim of α- and β-cyclodextrins at the C-6 positions. In addition, flavinium units were attached to the secondary rim of the β-cyclodextrin macrocycle. The relationship between the structural features and the catalytic performance of the conjugates, including those recently reported by us, was analyzed. The rate and enantioselectivity of the sulfoxidations catalyzed by flavin–cyclodextrin conjugates are influenced mainly by the size of the cyclodextrin cavity, the type of flavin unit (alloxazine or isoalloxazine), and by the relative orientation of the flavin and cyclodextrin moieties.     

A fluoro analogue of the menadione derivative 6-[2'-(3'-methyl)-1',4'-naphthoquinolyl]hexanoic acid is a suicide substrate of glutathione reductase. Crystal structure of the alkylated human enzyme

Glutathione reductase is an important housekeeping enzyme for redox homeostasis both in human cells and in the causative agent of tropical malaria, Plasmodium falciparum. Glutathione reductase inhibitors were shown to have anticancer and antimalarial activity per se and to contribute to the reversal of drug resistance. The development of menadione chemistry has led to the selection of 6-[2'-(3'-methyl)-1',4'-naphthoquinolyl]hexanoic acid, called M(5), as a potent reversible and uncompetitive inhibitor of both human and P. falciparum glutathione reductases. Here we describe the synthesis and kinetic characterization of a fluoromethyl-M(5) analogue that acts as a mechanism-based inhibitor of both enzymes. In the course of enzymatic catalysis, the suicide substrate is activated by one- or two-electron reduction, and then a highly reactive quinone methide is generated upon elimination of the fluorine. Accordingly the human enzyme was found to be irreversibly inactivated with a k(inact) value of 0.4 +/- 0.2 min(-1). The crystal structure of the alkylated enzyme was solved at 1.7 A resolution. It showed the inhibitor to bind covalently to the active site Cys58 and to interact noncovalently with His467', Arg347, Arg37, and Tyr114. On the basis of the crystal structure of the inactivated human enzyme and stopped-flow kinetic studies with two- and four-electron-reduced forms of the unreacted P. falciparum enzyme, a mechanism is proposed which explains naphthoquinone reduction at the flavin of glutathione reductase.     

Use of Chemically Bonded β‐Cyclodextrin Silica Stationary Phase for Liquid Chromatographic Separation of Structural Isomers

The retention behavior of five disubstituted benzene derivatives and two naphthalene derivatives is examined by using a chemically bonded β‐cyclodextrin silica stationary phase with the moiety containing the s‐triazine. The chromatographic results of five disubstituted benzene derivatives and two naphthalene derivatives show that effective separation is achieved on this stationary phase by high‐performance liquid chromatography. The results of the present investigation indicate that the formation of inclusion complexes plays a dominant role in the separation mechanism. However, the selectivity can be significantly enhanced by the n‐n interactions between the s‐triazine ring of the chemically bonded β‐cyclodextrin silica stationary phase and the aromatic ring of solutes. For example, the effective separation of the o‐, m‐, and p‐toluidine isomers on this stationary phase with the moiety containing the s‐triazine ring was better than on that of some β‐cyclodextrin bonded stationary phases without the moiety containing s‐triazine ring.     

The Stability of Self-inclusion Complexes of Cyclodextrin Derivatives Bearing a p-Dimethylaminobenze Moiety

An appending moiety of modified cyclodextrins acts as an intramolecular guest and forms a self-inclusion complex in aqueous solution. In this study, the stability of self-inclusion complexes of modified cyclodextrins which have a p-dimethylaminobenzene moiety was analyzed by fluorescent decay analyses, and the factor that determines the stability of the self-inclusion complex was determined by a computational approach. The self-inclusion form is stabilized mainly due to van der Waals interaction between the appending moiety and the cyclodextrin ring.     

Recent trends in enzyme engineering aiming to improve bioelectrocatalysis proceeding with direct electron transfer

Among the known types of electrochemical biosensors, the third generation based on the ability of some enzymes to direct electron transfer (DET) is the most promising one. The enzyme property to DET is depending on its capability to electron transfer from enzymatically reduced built-in native cofactor (flavin mononucleotide, flavin adenine dinucleotide, pyrroloquinoline quinone, or heme) to a conductive surface directly for single cofactor enzymes or through a native structural electron acceptor (heme or copper-containing prosthetic groups) for multicofactor enzymes. Thus, there are two possibilities to use such type enzymes: to find a natural source of the enzyme with these properties; or to construct the recombinant chimeric analogs using the gene-engineering techniques. The modern molecular genetics opens the possibility to be independent of million-year natural evolution and engineer the specific enzymes for scientific and technological needs. This brief review is focused mostly on the recent publications on application of DET-capable engineered enzymes for the third-generation electrochemical biosensors.     

A Rapidly Self‐Healing Supramolecular Polymer Hydrogel with Photostimulated Room‐Temperature Phosphorescence Responsiveness

Development of self‐healing and photostimulated luminescent supramolecular polymeric materials is important for artificial soft materials. A supramolecular polymeric hydrogel is reported based on the host–guest recognition between a β‐cyclodextrin (β‐CD) host polymer (poly‐β‐CD) and an α‐bromonaphthalene (α‐BrNp) polymer (poly‐BrNp) without any additional gelator, which can self‐heal within only about one minute under ambient atmosphere without any additive. This supramolecular polymer system can be excited to engender room‐temperature phosphorescence (RTP) signals based on the fact that the inclusion of β‐CD macrocycle with α‐BrNp moiety is able to induce RTP emission (CD‐RTP). The RTP signal can be adjusted reversibly by competitive complexation of β‐CD with azobenzene moiety under specific irradiation by introducing another azobenzene guest polymer (poly‐Azo).     

Inter- and intramolecular effects of tyrosyl residues on flavin triplets and radicals as investigated by flash photolysis.

Abstract— Addition of tyrosine or derivatives to aqueous solutions of flavins does not significantly impede either formation of the flavin triplet or the rate of O₂ oxidation of the flavin radical generated by reaction of triplet with the phenol. However, the rate of radical decay is decreased. There is only a modest effect that results from altering the nature of the group on alkyl side chains of the flavin when the substituent, e.g. phenylalanine, does not complex avidly with the isoalloxazine system. However, when a tyrosyl or O-methyltyrosyl residue is covalently attached to an alkyl side chain at the N¹⁰-position of the flavin, the considerable intramolecular complexing that results markedly decreases the formation of flavin triplet and, therefore, the radical yield. The rate of triplet decay is not much different than for noninternally complexed flavins, but extensive intramolecular radical decay occurs, and the rate of 0₂ oxidation of radical is decreased. A shorter alkyl chain is more effective than a longer one for decreasing triplet production, but the greater proximity of a photooxidiz-able tyrosyl residue to the flavin nucleus within the former allows a slightly higher intramolecular radical yield. Attachment of a tyrosyl residue by a short chain from the N³-position of the flavin has only a modest effect on the production of flavin triplet and its decay. There is less radical production from internal than from external tyrosyl residues, and the rate of O₂ oxidation of the flavin radical generated by such intermolecular photoreductants as N-acetyl tyrosine ethyl ester or EDTA is somewhat decreased. The tyrosyl residue within the active-site peptide of mitochondrial monoamine oxidase is not so susceptible to photooxidation by the 8α-(S-L-cysteinyl)flavin involved, since the thioether linkage at this position severely reduces triplet production. Upon oxidation of the thioether to sulfone, however, the triplet yield is partially restored. Some flavin radical can then be generated from either the intra- or an intermolecular tyrosyl residue. Taken together, these results demonstrate that tyrosyl residues near the flavin-binding sites of flavo-proteins can become oxidized by the flavin triplet that is light-generated unless the proximity and steric disposition of the interactants is such as to allow dissipation of much of the energy as radiationless decay within a tight complex or unless an 8α-thioether linkage to the flavin coenzyme is involved. Also, flavin radicals, whether generated photochemically or by biochemical oxidation of substrate, are readily oxidized by O₂ in the presence of tyrosyl functions unless tight complexing occurs. More remarkable, though, is the decreased rate of radical decay conferred by the association with a tyrosyl residue. This stabilization of reactive flavin radicals may have considerable consequence in the catalytic mechanism of such enzymes.     

The diverse roles of flavin coenzymes--nature's most versatile thespians

Flavin coenzymes play a variety of roles in biological systems. This Perspective highlights the chemical versatility of flavins by reviewing research on five flavoenzymes that have been studied in our laboratory. Each of the enzymes discussed in this review [the acyl-CoA dehydrogenases (ACDs), CDP-6-deoxy-l-threo-d-glycero-4-hexulose-3-dehydrase reductase (E3), CDP-4-aceto-3,6-dideoxygalactose synthase (YerE), UDP-galactopyranose mutase (UGM), and type II isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IDI-2)] utilizes flavin in a distinct role. In particular, the catalytic mechanisms of two of these enzymes, UGM and IDI-2, may involve novel flavin chemistry.     

Surface reconstitution of glucose oxidase onto a norbornylogous bridge self-assembled monolayer

An electrode construct was fabricated in which a self-assembled monolayer containing a novel norbornylogous bridge was covalently attached to flavin adenine dinucleotide (FAD), the redox active centre of several oxidase enzymes. The electrochemistry of the construct was investigated before and after the reconstitution of glucose oxidase around the surface bound FAD. Rapid rates of electron transfer were observed both before and after the reconstitution of biocatalytically active enzyme. However, no biocatalytic activity was observed under anaerobic conditions suggesting the a lack of enzyme turnover through direct electron transfer. It is proposed that a decrease in the electronic coupling between the redox active FAD and the electrode following reconstitution of the glucose oxidase – a probable consequence of the FAD being immersed in a protein environment – was responsible for the inability of the enzyme to be turned over under anaerobic conditions.     

Flavin- and Deazaflavin-Containing Model Compounds Mimic the Energy Transfer Step in Type-II DNA-Photolyases

A distinct energy transfer between the deazaflavin and the flavin is observed in compounds that mimic the DNA repair function of DNA-photolase enzymes (see sketch). Studies on these models prove that the deazaflavin acts solely as photoantenna and suggest that the two cofactors have to be separated within the enzyme to suppress a competitive intercofactor electron transfer reaction.     

Role of adenine in thymine-dimer repair by reduced flavin-adenine dinucleotide

We present a study of excited-state behavior of reduced flavin cofactors using femtosecond optical transient absorption spectroscopy. The reduced flavin cofactors studied were in two protonation states: flavin-adenine dinucleotide (FADH2 and FADH-) and flavin-mononucleotide (FMNH2 and FMNH-). We find that FMNH- exhibits multiexponential decay dynamics due to the presence of two bent conformers of the isoalloxazine ring. FMNH2 exhibits an additional fast deactivation component that is assigned to an iminol tautomer. Reduced flavin cofactors also exhibit a long-lived component that is attributed to the semiquinone and the hydrated electron that are produced in photoinduced electron transfer to the solvent. The presence of adenine in FADH2 and FADH- further changes the excited-state dynamics due to intramolecular electron transfer from the isoalloxazine to the adenine moiety of cofactors. This electron transfer is more pronounced in FADH2 due to pi-stacking interactions between two moieties. We further studied cyclobutane thymine dimer (TT-dimer) repair via FADH- and FMNH- and found that the repair is much more efficient in the case of FADH-. These results suggest that the adenine moiety plays a significant role in the TT-dimer repair dynamics. Two possible explanations for the adenine mediation are presented: (i) a two-step electron transfer process, with the initial electron transfer occurring from flavin to adenine moiety of FADH-, followed by a second electron transfer from adenine to TT-dimer; (ii) the preconcentration of TT-dimer molecules around the flavin cofactor due to the hydrophobic nature of the adenine moiety.     

Reagentless biosensor based on PQQ-depended glucose dehydrogenase and partially hydrolyzed polyarbutin

Partially hydrolyzed polyarbutin-containing benzoquinone groups were synthesized by using chemoenzymatic methods. This polymer was used as a mediator for the oxidation of pyrroloquinoline quinone-dependent glucose dehydrogenase. Polymer was covalently attached to the enzyme through the glucose moiety of the polymer and amine residues in the protein. Electrochemical studies show that the oxidized benzoquinone attached to the enzyme can act as a mediator for the reoxidation of the enzyme at carbon electrode surfaces. The apparent Michaelis constant and inactivation rate constant of the coupled enzyme were found to be similar to these parameters of the native enzyme.     

葡萄糖酶电极测定环糊精聚合物中的环糊精单元

用多巴胺电氧化聚合物膜将葡萄糖氧化酶固定在铅笔电极上,制得简易的葡萄糖酶电极.用自制的葡萄糖酶电极对自制环糊精聚合物中环糊精单元进行定量检测.研究了自制的葡萄糖酶电极的检测范围和稳定性.结果表明环糊精聚合物中环糊精单元质量与葡萄糖酶电极响应电流间存在很好的线性关系,且酶电极稳定性好,可以多次反复使用,连续使用30天,响应电流只减弱7%.与用Sulfate-Phenol比色法测得的环糊精聚合物中环糊精单元结果相比,两者相对偏差在8%以内.