The [M?OH]+ ions of m- and p-ethylnitrobenzene: A common structure?

The structures of the [M? OH]⁺ ions of m- and pethylnitrobenzene have been compared by measurements of metastable ion spectra, collisional activation spectra, kinetic energy releases and critical energies for the formation of these ions and their subsequent decomposition. Normalized rates of fragmentation of metastable molecular ions and metastable [M? OH]⁺ ions have been compared for ion lifetimes up to 30 μs. The energy measurements fail to distinguish between the structures of the [M? OH]⁺ ions, but the normalized fragmentation rates and the collisional activation spectra show their structures to be different.     

Charge localization: The ion kinetic energy spectra of pyrazine,pyrimidine and pyridazine

The ion kinetic energy (IKE) spectra of pyrazine, pyrimidine, pyridazine, pyrazine-d₄, pyrimidine-d₄ and pyridazine-d₄ have shown that these compounds can more readily be distinguished on the basis of IKE spectra than mass spectra. Studies of the fragmentation of various doublycharged ions have given information about the localization of charge on the heteroatoms and on the structures of the ions themselves. Transition states from which fragmentation occurs for doublycharged ions with loss of either [H]⁺ or [D]⁺ have shown large differences of the order 1 Å between the intercharge distances in the two cases.     

The mass spectra of carboxylic acids–II: Fragmentation mechanisms in the homologous series HOOC(CH2)nCOOH

The mass spectra of the homologous series of acids HOOC(CH₂)_nCOOH from n = 0 to 12 have been studied together with certain deuterium labeled members. The fragmentation mechanisms of the lower homologues are discussed in some detail. The loss of one or two molecules of water from the molecular ions was shown to proceed most favorably via a 6-centred intermediate involving the methylene group β- to a carboxyl function. It was observed that the ease of carboxyl-carboxyl interaction promoting CO₂ elimination from the molecular ion could be simply correlated with n and thus serves as a structure-identifying feature.     

Studies in negative ion mass spectrometry. V—A Comparison of positive a positive and negative ion mass spectra of copper(II) complexes of bidentate schiff base ligands

70 eV positive and negative ion mass spectra of a series of copper(II) Schiff base complexes have been obtained consecutively under the same ion source conditions. The characteristic feature of the negative ion spectra is their extreme simplicity relative to the corresponding positive ion spectra, the only ions present in significant abundance being the molecular anions and ligand ions. The influence of substituents (R) on positive and negative ion fragmentation patterns is discussed. Metastable peaks have been obtained in all cases for the transition [Cu(Ligand)₂]^? → [Ligand]^?.     

Cyclization of peptide b9 ions

The product ion mass spectra obtained by CID of the b₉ ions derived by loss of neutral alanine from the MH⁺ ion of the peptides Tyr(Ala)₉, (Ala)₄Tyr(Ala)₅, and (Ala)₈TyrAla are essentially identical, indicative of full cyclization reaction to a common intermediate before fragmentation. This leads to abundant nondirect sequence ions in the product ion mass spectra of the b₉ ions. The product ion mass spectra of the b₈ ions from the first two peptides also are essentially identical. The fragmentation of the MH⁺ ions also leads to low intensity nondirect sequence ions in the product ion mass spectra. N-terminal acetylation blocks the cyclization and eliminates nondirect sequence fragment ions in the product ion mass spectra.     

Insights into coal structure from degradation with ruthenium tetroxide and tandem mass spectrometry

The products of ruthenium tetroxid oxidation of coal (Illinois No. 2) at ambient temperature were examined by tandem mass spectrometry using positive and negative chemical ionization. The negative-ion mass spectrum of the coal sample displays seven homologous series of ions. Individual compounds were characterized by recording daughter spectra. In this way, the following types of compounds were identified: aliphatic dicarboxylic acids, aromatic dicarboxylic and tricarboxylic acids, anhydrides of the di- and tri-carboxylic acids, and dianhydrides corresponding to the tetracarboxylic aromatic acids. The positive-ion mass and daughter spectra provided additional confirmation. Two series of ions dominate the positive-ion mass spectrum, those from the aliphatic dicarboxylic acids, and the corresponding anhydrides. The fragmentation behavior of model compounds was examined to confirm these assignments. The carboxylic acids and anhydrides identified suggest the presence of particular structural features in the coal prior to oxidation. These include C₂–C₆ aliphatic bridges between aromatic units, fused ring aromatic structures, tetralin and indan structures.     

Effect of the his residue on the cyclization of b ions

The MSⁿ spectra of the [M + H]⁺ and b ₅ peaks derived from the peptides HAAAAA, AHAAAA, AAHAAA, AAAHAA, and AAAAHA have been measured, as have the spectra of the b ₄ ions derived from the first four peptides. The MS² spectra of the [M + H]⁺ ions show a substantial series of b_n ions with enhanced cleavage at the amide bond C-terminal to His and substantial cleavage at the amide bond N-terminal to His (when there are at least two residues N-terminal to the His residue). There is compelling experimental and theoretical evidence for formation of nondirect sequence ions via cyclization/reopening chemistry in the CID spectra of the b tons when the His residue is near the C-terminus. The experimental evidence is less clear for ions when the His residue is near the N-terminus, although this may be due to the use of multiple alanine residues in the peptide making identifying scrambled peaks more difficult. The product ion mass spectra of the b ₄ and b ₅ ions from these isomeric peptides with cyclically permuted amino acid sequences are similar, but also show clear differences. This indicates less active cyclization/reopening followed by fragmentation of common structures for b _n ions containing His than for sequences of solely aliphatic residues. Despite more energetically favorable cyclization barriers for the b ₅ structures, the b ₄ ions experimental data show more clear evidence of cyclization and sequence scrambling before fragmentation. For both b ₄ and b ₅ the energetically most favored structure is a macrocyclic isomer protonated at the His side chain.     

Effect of the sarcosine residue on sequence scrambling in peptide b5 ions

The effect of N‐methylation on sequence scrambling in the fragmentation of b₅ ions has been investigated by studying a variety of peptides containing sarcosine (N‐methylglycine). The product ion mass spectra for the b₅ ions derived from Sar‐A‐A‐A‐Y‐A and Sar‐A‐A‐Y‐A‐A show only minor signals for non‐direct sequence ions the major fragmentation reactions occurring from the unrearranged structures. This is in contrast to the b₅ ions where the Sar residue is replaced by Ala and sequence scrambling occurs. The b₅ ion derived from Y‐Sar‐A‐A‐A‐A shows a product ion mass spectrum essentially identical to the spectrum of the b₅ ion derived from Sar‐A‐A‐A‐Y‐A, indicating that in the former case macrocyclization has occurred but the macrocyclic form shows a strong preference to reopen to put the Sar residue in the N‐terminal position. Similar results were obtained in the comparison of b₅ ions derived from A‐Sar‐A‐A‐Y‐A and Sar‐A‐A‐Y‐A‐A. The product ion mass spectra of the MH⁺ ions of Y‐Sar‐A‐A‐A‐A and A‐Sar‐A‐A‐Y‐A show substantial signals for non‐direct sequence ions indicating that fragmentation of the MH⁺ ions channels extensively through the respective b₅ ions and further fragmentation of these species. Copyright © 2014 John Wiley & Sons, Ltd.     

The structures and formation of [C4H6N]+ ions 2—ion structures derived from 2-methylpropanenitrile

The loss of a hydrogen atom from ionized 2-methylpropanenitrile is preceded by a drastic rearrangement of the molecular ion. The result of this fragmentation is the generation of two stable structurally different [C₄H₆N]⁺ ions, formed via different pathways. Their structures can be established by a careful comparison of the metastable ion spectra, collision activation spectra, and charge stripping spectra from the compound and its three deuterium labeled analogues and from [C₄H₆N]⁺ ions generated from reference compounds via electron impact ionization or in selected ion/molecule reactions.     

Fragmentation Reactions of b<Subscript>5</Subscript> and a<Subscript>5</Subscript> Ions Containing Proline—The Structures of a<Subscript>5</Subscript> Ions

A detailed study has been made of the b₅ and a₅ ions derived from the amides H-Ala-Ala-Ala-Ala-Pro-NH₂, H-Ala-Ala-Ala-Pro-Ala-NH₂, and H-Ala-Ala-Pro-Ala-Ala-NH₂. From quasi-MS³ experiments it is shown that the product ion mass spectra of the three b₅ ions are essentially identical, indicating macrocyclization/reopening to produce a common mixture of intermediates prior to fragmentation. This is in agreement with numerous recent studies of sequence scrambling in b ions. By contrast, the product ion mass spectra for the a₅ ions show substantial differences, indicating significant differences in the mixture of structures undergoing fragmentation for these three species. The results are interpreted in terms of a mixture of classical substituted iminium ions as well as protonated C-terminal amides formed by cyclization/rearrangement as reported recently for a₄ ions (Bythell, Maître , Paizs, J . Am. Chem. Soc. 2010, 132, 14761–14779). Novel fragment ions observed upon fragmentation of the a₅ ions are protonated H-Pro-NH₂ and H-Pro-Ala-NH₂ which arise by fragmentation of the amides. The observation of these products provides strong experimental evidence for the cyclization/rearrangement reaction to form amides and shows that it also applies to a₅ ions.     

Mass spectral studies on steroidal compounds—II: 7a-aza compounds in the cholestane series (ring Bε-lactams)

The mass spectra of four structurally related 7a-aza compounds in the cholestane series have been examined. These spectra are conspicuous by the presence of a fragment ion peak at m/e 222 (C₁₅H₂₈N). which can be of diagnostic value in characterisation of such ε-lactams. The fragmentation pathways are supported by accurate mass measurement of the salient fragment ions and in some cases by appropriate metastable peaks.     

The doubly-charged ion mass spectra of hydrocarbons

The doubly-charged ion mass spectra of some hydrocarbons, including a variety of structural types, have been obtained by a new technique in which doubly-charged ions are charge exchanged with neutral molecules and so separated from singly-charged ions. The spectra show strong similarities, independent of hydrocarbon structure; characteristic ions include [C_mH₂]⁺⁺ (m = 2 to 5), [C_nH₆]⁺⁺(n > 6), [C₁₀H₈]⁺⁺, [C₁₂H₈]⁺⁺, [C₁₁H₁₀]⁺⁺, [C₇H₇]⁺⁺·, [C₉H₇]⁺⁺· and [C₁₃H₁₁]⁺⁺·. The fragmentation pattern of 2-phenylnaphthalene has been reconstructed, based on observed reactions of metastable doubly-charged ions to give fragment doubly-charged ions. In addition, we examined metastable ion fragmentations leading to two singly-charged ions for some of the characteristic ions, using several compounds. The value of doubly-charged ion mass spectra of hydrocarbons appears to lie in the information they provide on ion structures; this information was sufficient to permit the proposal of structures for the major ions encountered in this study.     

Electron-impact fragmentation of aliphatic polynitro compounds

The mass spectra of two series of aliphatic polynitro compounds are reported and discussed. The fragmentation patterns of aliphatic nitro and polynitro compounds are similar in that no appreciable molecular ion current is observed; however, there are several other features in the fragmentation of aliphatic polynitro compounds which differ from that of nitroalkane spectra. Both series of compounds studied-C(NO₂)_x(CH₃)_4?x, where x = 4 to 0 and C₂(NO₂)_x(CH₃)_6?x, where x = 6,4,2-show a decrease in the number and intensity of alkylions with an increase in the NO⁺ and NO₂⁺ ion current as x increases. The main ions resulting from the more nitrated compounds are [NO]⁺, [NO₂]⁺, [CO₂]^+. and [CH₃CO]⁺, whose noncharged counterparts are the principal species produced in the detonation of these compounds. This similarity of the products of the two processes suggests the use of mass spectroscopy for the investigation of the initial explosive processes. The principal fragmentation pathways of the polynitroalkanes have been elucidated by exact mass measurements and the observation of metastable ion transitions.     

Energy-dependent collision-induced dissociation of lithiated polytetrahydrofuran: Effect of the size on the fragmentation properties

The fragmentation properties of singly and doubly lithiated polytetrahydrofuran (PTHF) were studied using energy-dependent collision-induced dissociation. The product ion spectrum of [PTHF + Li]⁺ showed the formation of three different series corresponding to product ions with hydroxyl, aldehyde and vinyl end-groups. Interestingly, besides these series, two additional, non-lithiated product ions C₄H₉O⁺ and C₄H ₇ ⁺ were identified in the MS/MS spectra. The MS/MS of the doubly lithiated PTHF ([PTHF + 2Li]²⁺) with a number of repeat units ranging from 8 to 27 showed the formation of product ions similar to those of the singly lithiated series, however, doubly lithiated product ions and product ions formed by the loss of one Li⁺-ion from the precursor ion also appeared with significant abundances. Analysis of the breakdown curves for the singly and doubly charged PTHF indicated that the series A ions are formed most probably together with the series B ions, while members of the series C ions appeared at significantly higher collision energies. The fragmentation properties of [PTHF + Li]⁺ and [PTHF + 2Li]²⁺ were also interpreted using the survival yield method. It was found that the collision energy/voltage necessary to obtain 50% fragmentation (CV₅₀) was dependent linearly on the number of the repeat units, i.e., on the size, or the number of degrees of freedom (DOF).     

Metastable ion and induced stable ion fragmentation of isomeric 5-methyl-3-tolyl-1,2,4-oxadiazoles

The electron ionization fragmentation patterns of 5-methyl-3-(o-, m- and p-tolyl)-1,2,4-oxadiazoles (1a—c) have been examined by metastable ion and high resolution mass spectrometry. The o-tolyl isomer loses CO and C₂H₂O from the metastable molecular ion whereas the m- and p-tolyl isomers lose only CH₃CN thus indicating a strong ortho effect in directing the fragmentation in 1a. Slight differences between o-, m- and p-tolyl isomers in the collisional activation fragmentation of stable [C₇H₆N]⁺ ions suggest that structural differences exist even after a series of extensive rearrangements of the molecular ions. Metastable ion kinetic energy (MIKE) and collisional activation (CA) spectra were very helpful in providing valuable information about many fragments.     

Gas-Phase Fragmentation Studies of Biotinylated,Hexaethylene Glycol–Spacered Oligosaccharides—Molecular Probes—Using Electrospray Mass Spectrometry on a Hybrid High-Resolution Mass Spectrometer

The electrospray ionization high-resolution mass spectra of biotinylated hexaethylene glycol–spacered molecular probes bearing biologically relevant carbohydrate moieties in positive and negative modes were recorded and interpreted. Collisionally induced decay mass spectra (positive mode) revealed different patterns depending on the charge of the parent ion, attached cations (or ions), the composition, and the sequence of carbohydrate fragments. The most intense peaks (two series) originated from the sequential cleavage of glycoside bonds resulting in charge location on the reducing end (Y series observed for all of the test compounds) or nonreducing end (B series). Hexaethylene glycol chain fragmentation giving rise to the cleavage of the C–O bond remote from the biotin moiety was observed. Other fragment ions lighter than the above by a difference of (C₂H₄O) _n were absent or much smaller. Similar fragmentation was found for all of the nonsulfated biotinylated glycosides with the hexaethylene glycol spacer thus demonstrating that this type of fragmentation was characteristic of such molecular probes. Similar cleavages along with biotin moiety decay via the elimination of H₂S and H₂CS were observed for negative ions in the collisionally induced decay mass spectra of sulfated and neutral molecular probes.     

Combined gas chromatography-mass spectrometry of the inositol trimethylsilyl ethers and acetate esters

Each of the inositol diastereomers have been subjected to low resolution gas chromatography-mass spectrometry as their hexa-O-trimethylsilyl (TMSi) ethers and as their hexaacetyl esters. The TMSi ethers of the inositols each possess a unique spectrum consisting of the same ions occurring with remarkable variation in intensity. This variation, which is much greater with the inositol TMSi ethers than in the spectra of the inositol acetates, is presumably an expression of the stereochemistry of each isomer exaggerated by the bulky TMSi groups. Using TMSi-d₉, labeling as well as ring labeling with deuterium we identified several fragment ions which are characteristic of the cyclitols. The spectra of the TMSi inositols are compared with the spectra of other TMSi carbohydrates. Two main series of fragmentation processes are observed in the inositol hexaacetates. With the aid of acetyl-d₃ labeling each of these series were found to divide into two more pathways consisting of ions of the same m/e values but of different structures. These pathways are compared with similar pathways observed in other acetyl carbohydrates. A method is described for the direct conversion of TMSi ethers to acetate esters which has potential usefulness in natural product studies.     

THE MASS SPECTRA OF ALKYL ARYL SULPHIDES,DIARYL DISULPHIDES AND ALKYL ARYL SULPHONES

Abstract

The electron impact mass spectra of a comprehensive series of each of the titled compounds have been studied. The spectra of the sulphides show that one or two methyl groups at the ortho position of the aryl rings markedly increase the intensity of the M-R and/or M-SR ions. The abundance of the latter also increase with increases in the size of the alkyl group. The fragmentation patterns of the diaryl disulphides are also sensitive to steric effects. The presence of an ortho methyl group inhibits the appearance of M-S₂ ions but leads to the formation of new ions at M-SH₃ mu. The spectra of ethyl phenyl sulphone and the ethyl tolyl sulphones are unique in that their spectra contain peaks at M–14 mu. Deuterium labelling indicates that these ions arise by the loss of a methyl radical from protonated (or deuteriated) molecular ions.     

Variation of fragmentation with ring size in cyclic α-amino acids

High resolution mass measurements, defocused metastable ion detection and deuterium labeling experiments have been employed in an investigation of the electron-impact induced decomposition of a series of carbocyclic amino acids, which varied in ring size from three to eight carbon atoms. About 50 per cent of the total ion current is carried by [M ? COOH]⁺ ions in the spectra obtained from compounds with five to eight carbon atoms in the ring. This is analogous to the fragmentation of the open chain naturally occurring amino acids. The behavior of the compounds with the two smallest rings is anomalous, reflecting to a larger extent the influence of the ring itself. Special attention has been given the loss of H₂O and NH₄ from ionized species of 1-aminocyclopropanecarboxylic acid.     

Structure and formation of [C4H6N]+ ions: 1—Ion structures derived from aliphatic nitriles

Structures and formation of the [C₄H₆N]⁺ ions present in the mass spectra of eleven α-substituted and eleven α-unsubstituted nitriles have been investigated from collisional activation and metastable ion spectra. Collisional activation spectra lead to identification of six structures. The [C₄H₆N]⁺ ions from some branched compounds prove to be mixtures. This, as well as the identity of all metastable ion parameters and certain spectral data, shows that energy differences between all structures are small. This is corroborated by MINDO/3 calculations showing a spread from 724 to 891 kJ mol^?1 over the structures. Earlier proposals for two different [C₄H₆N]⁺ ion structures, based on the mass spectra of deuterium labelled compounds, appeared to be correct. A computer program to calculate the contribution of standard spectra in a measured spectrum has been developed.